These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1358 fasta sequence [ACCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGTCAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGGTGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCACCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAAGAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCGCCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAATCGTTATTTGACGAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTCAAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTATTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACAATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTT] [+] EMBL CF277100 [ACCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTGCCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCG ] [+] EMBL AK064339 [ CCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCTCCCCGGGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGTCAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGGTGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCACCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAAGAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCGCCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAATCGTTATTTGACGAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTCAAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTATTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACAATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTT] [+] EMBL CF315070 [ AGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACAAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGAC ] [+] EMBL AK103879 [ CCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCGCCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTCCTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCTGCCGCCGACGAAATCCCTTCAGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCCTTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGACAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCCCAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCCGTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGTCAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGGTGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCACCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAAGAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCGCCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAATCGTTATTTGACGAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTCAAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTATTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACAATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTGTACTGATATCAAGAGATTTTGAAGGACTTT ] [-] EMBL CF277101 [ AGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACAGTACAGAAGAGGATGAGCCTACTATCTATCCTAAGTTAGAAGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACAATCGGCTCAGC AGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATTTGAATAGTTCTCTCCACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGAAATCAATTATGAACTTCCCTTATACTGATATCAAGAG ] consensusID : consensus_9995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 664 fasta sequence [CCTGTTGTAACTGGCTTACGCTGTATGAATAACACCGTCTTTGCCATCTGGTGTAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACCGTGCAGAAGAGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCAGGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTAACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACCATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCCCCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTGCTCGAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760197 [CCTGTTGTAACTGGCTTACGCTGTATGAATAACACCGTCTTTGCCATCTGGTGTAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACCGTGCAGAAGAGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCAGGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTAACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACCATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCCCCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTGCTCGAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760196 [CCTGTTGTAACTGGCTTACGCTGTATGAATAACACCGTCTTTGCCATCTGGTGTAGAGGAAAACTCCAGCAAAGCAAAAGGCAAAGAACCGTGCAGAAGAGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCAGGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTAACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACCATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGCTGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCCCCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATCTTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCAAAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAAAATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTGCTCGAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9995#0 ACCAGCCGCCGCCGCCGCCGCCGCCGACTGCTCGGCGATCATGGTCGGCGACCGAAAGCG 60 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CCCGGCTCCCTTCGCCGGATTCTCCCCGTTCGCTCGCTCCCTCCTCTTCTCCGCCTCCTC 120 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CTCTAAACCACTACCTCCCCCCGAGGATCCACCCGCCGCCGCCGCCGACGAAATCCCTTC 180 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 AGGAATCGCCGGCTCCAGTCGCGATATGCCGCCGCCCAAGCGCGCCAAGCGGGCCGAGCC 240 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 TTCCAGCGACGAGGAGCGCTACAGCAGTGACGACGAGAGCTACAGCAGCGACTCCGACGA 300 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CAGCGACGACGCGTCGGAGGAGCTCGATACGGTGCAAGCGGACTTCGCCTTCTACGACCC 360 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CAAGCCCGGCGACTTCCATGGCGTCAAGCTGCTGCTCAAGACCTACCTCGACTCCAAGCC 420 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 GTGGGATCTCACTGGCTTCGTCGACCTCATCCTTGAGCAGACCACGGTGGGTACGGTTGT 480 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CAAGATTGCTGACGATGAAGAGGATGGTGAAGGAAATGGTGCTGATGGAAGCAGCACTGG 540 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 TGGCAATGACGATCTGTTTGGTCTCATTAGCGTGCTTAATCTTGGAAGATACAGTGAGCA 600 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CCGCTGTATGAAGGATCTTAAGGATTACCTGCTTGCTGTTTGTGGTGACAAGGATACCAA 660 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 GAAGAAGCTCAAGCAAATGCTGGGGGACAAAGCACCTGATGTGGGTCTGCTTGTGTGCCG 720 consensus_9995#1 ------------------------------------------------------------ consensus_9995#0 CCGTTTTGTGAATTTCCCATATGAACTTGTGCCCAAGATGTATGAAT--CGTTATTTGAC 778 consensus_9995#1 ---------------CCTGTTGTAACTGG--CTTACGCTGTATGAATAACACCGTCTT-T 42 ** * **** * * * * ********* * * * consensus_9995#0 GAAGTTTCATGGGCCACAGAAGACGAGCCAACACAAGAACTCCGGGACTCCTTCCGGTTC 838 consensus_9995#1 GCCATCTGGTGTAGAGGAAAACTCCAGC-AAAGCAAAAGGCAAAGAAC--CGTGCAGAAG 99 * * * ** * ** * *** ** *** * * ** * * * * consensus_9995#0 AAGCAGTACCTAATGGTTGTCAGAGTACTTGAGAGGAAAACTCCAGCAAAGCAAAAGGCA 898 consensus_9995#1 AGGATGAGCCTATTATCTATCCTAAGGTAGAAGACGAAATTTTTCGCGAGGTATCAAGCA 159 * * * **** * * ** * *** **** * ** * * * * *** consensus_9995#0 AAGAACAGTACAGAAGA----GGATGAGCCTATTAT---------CTATCCTAAGTTAGA 945 consensus_9995#1 GGACATGGTACTGACAATTTGAGATTAATTTTTCTTTGTGCAGTTCTGTTTGATGTGGTA 219 * **** ** * *** * * * * ** * * ** * consensus_9995#0 AGACGAAATTTTTCGCGAGCTTTCTTCATGGTCGTTCACTTTCCCAATACGTTCTGAACA 1005 consensus_9995#1 ACAAAACTTTTTTCCTCAGCTTTTTTCATGGTCGTTCACTTTCCCAATACGTTTTGAACC 279 * * * ****** ****** ***************************** ***** consensus_9995#0 ATCGGCTCAGCAAGAGATGAAGAATTACAAGGAGATGGGCTTAGTGATGGCCGTCAAAGC 1065 consensus_9995#1 ATCGGCTCAGCCAGAGATGAAGAATTTCAAGGAGATGGGCTTAGTGATGGCCGTCAAAGC 339 *********** ************** ********************************* consensus_9995#0 TGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATCTACTATCTGAATAGTTCTCTCC 1125 consensus_9995#1 TGAAGCAATTCCGAAGTTCCGAAAGAAGTTGGAGGATTTACTATTTGAATAGTTCTCTCC 399 ************************************* ****** *************** consensus_9995#0 ACGCATTGTAGGTCGTGTGGAATTTTGCTGCTGTCCACATGATATTGGAACCTCCATATC 1185 consensus_9995#1 CCGCCTTGTAGGTCGTGTGGAATTTTGCTGCTGTCCCCCTGATATTGGAACCTCCATATC 459 *** ******************************* * ********************* consensus_9995#0 TTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCA 1245 consensus_9995#1 TTCTCTTGCTATTGCTTGTTAGTGTCCCTAGTAAGCGCGGACGCTAAGTTTGTGAGTGCA 519 ************************************************************ consensus_9995#0 AAGCCCTAATTGAATTGCTAG-CATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGGA 1304 consensus_9995#1 AAGCCCTAATTGAATTGCTAGGCATTGCCATAGTAGAAGAGAAATTCATGTGTAAGAGAA 579 ********************* ************************************ * consensus_9995#0 AATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTT------ 1358 consensus_9995#1 AATCAATTATGAACTTCCCTTATACTGATATCAAGAGATTTTGAAGGACTTTTTTGGTTG 639 ****************************************************** consensus_9995#0 ------------------------- consensus_9995#1 CTCGAAAAAAAAAAAAAAAAAAAAA 664 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||