These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1576 fasta sequence [ACGCCAAGATCGAGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCG-ACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGCGACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCGACGAGGCGGCGCGGCCGCTGTACCGGGAGGCGGACTGCCCCTACATCCCGGCGCAGCTGGCGTGCGAGGCGCACGGGCGGCCGGAGACGGCGTACCAGCGGTGGCGGTGGCAGCCGCGCGGCTGCGCCCTCCCGGCGTTCGACGCGGCGGCGATGCTGGACAGGCTGCGCGGGAAGCGCGTGATGTTCGTCGGCGACTCGCTGGGGCGCGGGCAGTTCACGTCGCTGGTGTGCCTCCTCCTCGCCGCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTGTTCACCGCCGCGGCGTACAACGCCACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAGTCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGCATCGGCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCATCGTCTTCAACACCTACCTCTGGTGGTGCACCGGCCTCCAGTTCCGAATCCTGGAGGACGGGCCGTTCGACGCCGGCGGCAACTCGTCGACGACGACGTGGGTGTCGACGGAGGAGGCGTACGCGATGGCGTTCCGGGAGATGCTGCAGTGGGCGAGGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGCATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGCGGCGGCGAACCGGGGGGC--AAC-TGC-TAC-GGC-GAGA--CGG-AGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGCGCGGGGTGATGCGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGTCGTTCCTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCA-GTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACA-TGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGAGAACACCCTTTGACTTCAAAAAAAAA] [+] EMBL AK071031 [ACGCCAAGATCGAGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCG ACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGCGACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCGACGAGGCGGCGCGGCCGCTGTACCGGGAGGCGGACTGCCCCTACATCCCGGCGCAGCTGGCGTGCGAGGCGCACGGGCGGCCGGAGACGGCGTACCAGCGGTGGCGGTGGCAGCCGCGCGGCTGCGCCCTCCCGGCGTTCGACGCGGCGGCGATGCTGGACAGGCTGCGCGGGAAGCGCGTGATGTTCGTCGGCGACTCGCTGGGGCGCGGGCAGTTCACGTCGCTGGTGTGCCTCCTCCTCGCCGCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTGTTCACCGCCGCGGCGTACAACGCCACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAGTCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGCATCGGCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCATCGTCTTCAACACCTACCTCTGGTGGTGCACCGGCCTCCAGTTCCGAATCCTGGAGGACGGGCCGTTCGACGCCGGCGGCAACTCGTCGACGACGACGTGGGTGTCGACGGAGGAGGCGTACGCGATGGCGTTCCGGGAGATGCTGCAGTGGGCGAGGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGCATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGCGGCGGCGAACCGGGGGGC AAC TGC TAC GGC GAGA CGG AGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGCGCGGGGTGATGCGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGTCGTTCCTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCA GTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACA TGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAA ] [+] EMBL AU082680 [ AGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCG ACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGCGACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCG ] [+] EMBL OSC1791 [ AGATCGCCGGAGATGAAGGCGCCG CG CGCCGTCGCCGGT GNCAAGAGGGCGCGCGTCTC NCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCNGCCGAGCCTCCACTTCAATNCCGCCNCCGCCGGTGATNGGATCGAGCTGCCGGCCGCCAC NCGNAG CTGACCGAGGGGAGGACGACGACGAGGAGGTNGCGGGGGCGGCTGCGTTTCGCGNCGAACGGGAACGGCGAGGAGGAGGAGGAGGAGTGTn ] [+] EMBL OSC005 [ AGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAGAGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTCCTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTCCACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACG GGCGAACGACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGC ] [+] EMBL AA750579 [ CGCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTGTTCACCGCCGCGGCGTACAACG CACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAGTCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGCATCGGCCACCACGGCCGTCACTGGGAGGGCGCCGACGTCATCGT ] [+] EMBL BI796734 [ gccCGGC CGAACCGGGGGGCCAAACTTGCTTACGGGCGGAGAACCGGAAGATGATC GCGACGCCGCGTACTGGGGCTCCGACAGCCGGC CGGGGTGAT CGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGACGTTCCTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAGCACGTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTCCACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTCTACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACACTGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGAGAACACCCTTTGACTTCAAAAAAAAA] consensusID : consensus_9999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [CTCGCCGACCCCAAGACCTACCGCCGCTGCGTCCANTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACNAGCTCCTCTNCNCCAAGCTCTTCTACCCTTGAAAATAATTAAAANNACAACTAGAAGCTTCTAGANCAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGNGAAAAAAAAAAAA] [+] EMBL AU031450 [CTCGCCGACCCCAAGACCTACCGCCGCTGCGTCCANTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACNAGCTCCTCTNCNCCAAGCTCTTCTACCCTTGAAAATAATTAAAANNACAACTAGAAGCTTCTAGANCAATCCATGTAGGAGTATTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCAATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGNGAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9999#0 ACGCCAAGATCGAGATCGCCGGAGATGAAGGCGCCGCCGCCGCCGTCGCCGGTGGCCAAG 60 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 AGGGCGCGCGTCTCGCCGTTCGTCTTCCTGCTCGTGCTCTTCCTCCTCCTCTTCTCCTTC 120 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 CTCTACGGCGAAGACCTCAAGGAGCTCCTCGGCAGCCAAGCTCAAGCGCGGCCGAGCCTC 180 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 CACTTCAATGCCGCCGCCGCCGGTGATGGGATCGAGCTGCCGGCCGCCACGGCGGCGACG 240 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 ACCGAGGGGAGGACGACGACGAGGAGGTGGCGGGGGCGGCTGCCGTTCGCGGCGAACGGC 300 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 GACGGCGAGGAGGAGGAGGAGGAGTGTGACGTGTTCTCGGGGAGGTGGGTGCGCGACGAG 360 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 GCGGCGCGGCCGCTGTACCGGGAGGCGGACTGCCCCTACATCCCGGCGCAGCTGGCGTGC 420 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 GAGGCGCACGGGCGGCCGGAGACGGCGTACCAGCGGTGGCGGTGGCAGCCGCGCGGCTGC 480 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 GCCCTCCCGGCGTTCGACGCGGCGGCGATGCTGGACAGGCTGCGCGGGAAGCGCGTGATG 540 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 TTCGTCGGCGACTCGCTGGGGCGCGGGCAGTTCACGTCGCTGGTGTGCCTCCTCCTCGCC 600 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 GCCGTCCCCGACCCCGCCGCGAGGTCGTTCGCCACGTCGCCCGACCAGCAGCGCTCGGTG 660 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 TTCACCGCCGCGGCGTACAACGCCACCGTGGAGTTCTACTGGGCGCCGTTCCTCCTCCAG 720 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 TCCAACGCCGACAACGCCGCCGTCCACCGCATCTCCGACCGCATGGTCCGCCGCGGCAGC 780 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 ATCGGCCACCACGGCCGCCACTGGGAGGGCGCCGACGTCATCGTCTTCAACACCTACCTC 840 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 TGGTGGTGCACCGGCCTCCAGTTCCGAATCCTGGAGGACGGGCCGTTCGACGCCGGCGGC 900 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 AACTCGTCGACGACGACGTGGGTGTCGACGGAGGAGGCGTACGCGATGGCGTTCCGGGAG 960 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 ATGCTGCAGTGGGCGAGGGAGCACATGGACTTCGCGACGACGCGAGTCTTCTTCACGAGC 1020 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 ATGTCGCCGACGCACGGCAAGAGCCAGGACTGGGGCGGCGGCGAACCGGGGGGCAACTGC 1080 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 TACGGCGAGACGGAGATGATCGGCGACGCCGCGTACTGGGGCTCCGACAGCCGGCGCGGG 1140 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 GTGATGCGGGCGATCGGCGAGGTGCTCGACGGCGATGGCGCCGACGTGCCGGTGTCGTTC 1200 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 CTGAACGTGACGCAGCTGTCGCTGTACCGCAAGGACGCGCACACGTCGGTGTACAAGAAG 1260 consensus_9999#1 ------------------------------------------------------------ consensus_9999#0 CAGTGGACGCCGCCGACGCCGGAGCAGCTCGCCGACCCCAAGACCTACGCCGACTGCGTC 1320 consensus_9999#1 ---------------------------CTCGCCGACCCCAAGACCTACCGCCGCTGCGTC 33 ********************* * ******* consensus_9999#0 CACTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACGAGCTCCTCTACACCAAGCTCTTC 1380 consensus_9999#1 CANTGGTGCCTCCCCGGCCTGCAGGACACGTGGAACNAGCTCCTCTNCNCCAAGCTCTTC 93 ** ********************************* ********* * *********** consensus_9999#0 TACCCTTGAAAATAATTAAAAAAACAACTAGAAGCTTCTAGAACAATCCATGTAGGAGTA 1440 consensus_9999#1 TACCCTTGAAAATAATTAAAANNACAACTAGAAGCTTCTAGANCAATCCATGTAGGAGTA 153 ********************* ******************* ***************** consensus_9999#0 TTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCA 1500 consensus_9999#1 TTATGTAATGTATGCATGCAGGCATGCAGCTAGGCCGCGGCATCTAGCTAACATGGTTCA 213 ************************************************************ consensus_9999#0 ATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGAGAACACCCTT 1560 consensus_9999#1 ATATTTCGGAAAGAAAAAAAAAGGTAAAAAAATCCTTCCATGAATCTAGNGAAAA----- 268 ************************************************* *** * consensus_9999#0 TGACTTCAAAAAAAAA 1576 consensus_9999#1 -------AAAAAAAA- 276 ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||