These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 831 fasta sequence [GTCAAGCGCTTAGGGGCTGACAGAAGTCCTTGGACATTGGTGCGGGTTCTCCCTTTAATCGTGTGCCCAACCTTTGAAACTTCTAGTGCTGGTGTTACTTTGTTTGCTACTGGGCCTTAAAGACATCCCGCTGAAGAGCTAGTTAGGATGGTGTCAGGCCTTCCTCAAATGGGACTTCTTGCTGGGGTGGATGAAGATGAACAAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGGAGTGGGTGCTGGTGGTATCGTGTCAACGGCTTATTGTCTTTTGTATAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGGCCTCCTTGACCACCCAGATTCTCCATACATACGTGCACTGGGCTTCATGTACATAAGATATTGCATTCCCCCTGAAGACTTTTGGTGGTGGTATTCACCATATTGGAGCGATTCTGAGGAACTGGATGTGAAGGCGGGAGGTGGTTGCATAATGACGATAGGGAATATGTTAGAACATTGGTTAACTAAACTAGATTGGTTTTCTA-CCCTATTTCCACGTATTCCTGTTCCTGTTCAAAAGAAACTAGAAG-AAAAAATGCGACTTCGCAAATGCCAGGCCTTTTTAGAAGTCGATTCTGTCCAAGAA] [+] EMBL CD129636 [GTCAAGCGCTTAGGGGCTGACAGAAGTCCTTGGACATTGGTGCGGGTTCTCCCTTTAATCGTGTGCCCAACCTTTGAAACTTCTAGTGCTGGTGTTACTTTGTTTGCTACTGGGCCTTAAAGACATCCCGCTGAAGAGCTAGTTAGGATGGTGTCAGGCCTTCCTCAAATGGGACTTCTTGCTGGGGTGGATGAAGATGAACGAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAAAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAATACCTGGAG ] [+] EMBL CD071721 [ CCTTTAATCGTGTGCCCAACCTTTGAAACTTCTAGTGCTGGTGTTACTTTGTTTGCTACTGGGCCTTAGAGACGTCCCGCTGAAGAGCTAGTTAGGATGGTGTCANGCCTTCCTCNAATGGGACTTCTTGCTGG ] [+] EMBL CD182709 [ AAGAGCTAGTTAGGATGGTGTCAGGCCTTCCTCAAATGGGACTTCTTGCTGGGGTGGATGAAGATGAACAAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGNAGTG ] [+] EMBL CD092704 [ AAGAGCTAGTTAGGATGGTGTCAGGCCTTCCTCAAATGGGACTTTTTGCTGGGGTGGATGAAGATGAACAAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGGAGTGGGTGC ] [+] EMBL CD132900 [ AGATGAACAAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGGAGTGGGTGCTGGTGGTATCGTGTCAACGGCTTATTGTCTTTTGTATAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGGCCTCCTTGACCACCCAGATTCTCCATACATACGTGCACTGNGCTTCATGTACATAAGATATTGCATTCCCCCTGAAGACTTTTGGTGGTGGTATTCACCATATTGGAGCGATTCTGAGGAACTGGATGTGAAGGCGGGAGGTGGTTGCATAATGACGATAGGGAATATGTTAGAACATTGGTTAACTAAACTAGATTGGTTTTCTACCCCTA TTCCACGTATTCCTGTTCCTGTTCAAAAGAAACTAGAAG AAAAAATGCGAC ] [-] EMBL CD179356 [ ACAAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGGAGTGGGTGCTGGTGGTATCGTGTCAACGGCTTATTGTCTTTTGTATAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGG ] [-] EMBL CD179506 [ ACAAGCACCTCGTGGAAATATTTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGGAGTGGGTGCTGGTGGTATCGTGTCAACGGCTTATTGTCTTTTGTATAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGG ] [-] EMBL CD166077 [ TTTAAAACTCTGGGGGAACCCACAAACTATGAACTTAAACACAATGATTTATACAAACATTGTCCAGTCCCCATACTTCAAAGCCAACCTAGTTGAGCTGAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTG ] [-] EMBL CD189265 [ GAAGACGTACCATGAAGTTATTGATGAAATATATTACAAGGTTGAACATTTAGAGCCATGGGAACGTGGGAGTCGACGTATAGGGGTTCAAACAGGTATGTGTGGTGGAGTACGTGGAGTGGGTGCTGGTGGTATCGTGTCAACGGCTTATTGTCTTTTGTATAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGGCCTCCTTGACCACCCAGATTCTCCATACATACGTGCACTGGGCTACATGTACATAAGATATTGCATTCCCCCTGAAGACTTTTGGTGGTGGTATTCACCATATTGGAGCGATTCTGAGGAACTGGATGTGAAGGCGGGAGGTGGTTGCATAATGACGATAGGGAATATGTTAGAACATTGGTTAACTAAACTAGATTGGTTTTCTA CCCTATTTCCACGTATTCCTGTTCCTGTTCAAAAGAAACTAGAAGAAAAAAATGCGACT ] [+] EMBL CD068067 [ GAGTACGTGGAGTGGGTGCTGGTGGTATCGTGTCAACGGCTTATTGTCTTTTGTATAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGGCCTCCTTGACCACCCAGATTCTCCATACATACGTGCACTGGGCTTCATGTACATAAGATATTGCATTCCCCCTGAAGACTTTTGGTGGTGGTATTCACCATATTGGAGCGATTCTGAGGAACTGGATGTGAAGGCGGGAGGTGGTTGCATAATGACGATAGGGAATATGTTAGAACATTGGTTAACTAAACTAGATTGGTTTTCTA CCCTATTTCCACGTATTCCTGTTCCTGTTCAAAAGAAACTAGAAG AAAAAATGCGACT ] [-] EMBL CD130727 [ TAAACTTTTCACTTTAAAGCTTACAAGAAAACAACTCAAAGGCCTCCTTGACCACCCAGATTCTCCATACATACGTGCACTGGGCTTCATGTACATAAGATATTGCATTCCCCCTGAAGACTTTTGGTGGTGGTATTCACCATATTGGAGCGATTCTGAGGAACTGGATGTGAAGGCGGGAGGTGGTTGCATAATGACGATAGGGAATATGTTAGAACATTGGTTAACTAAACTAGATTGGTTTTCTA CCCTATTTCCACGTATTCCTGTTCCTGTTCAAAAGAAACTAGAAG AAAAAATGCGACTTCGCAAATGCCAGGCCTTTTTAGAAGTCGATTCTGTCCAAGAA] [-] EMBL CD133581 [ AAAGCTTACAAGAAAACAACTCAAAGGCCTCCTTGCCCACCCAGATTCTCCATACATACGTGCACTGGGCTTCATGTACATAAGATATTGCATTCCCCCTGAAGACTTTTGGTGGTGGTATTCACCATATTGGAGCGATTCTGAGGAACTGGATGTGAAGGCGGGAGGTGGTTGCATAATGACGATAGGGAATATGTTAGAACATTGGTTAACTAAACTAGATTGGTTTTCTA CCCTATTTCCACGTATTCCTGTTCCTGTTCAAAAGAAACTAGAAG AAAAAATGCGACT ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||