cluster # 10001

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Schistosoma mansoni
cluster # 10001 cluster # 10001 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10001#0 length = 1139 sequences # 7
consensus_10001#1 length = 657 sequences # 3

consensus_10001#2 length = 367 sequences # 1
consensus_10001#3 length = 183 sequences # 1

consensusID : consensus_10001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1139
fasta sequence

                              [AAGGCCAANAATTTGGCACGAGGCTTGAACCGTTACGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAACTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTTACACAAGCTTTGCATAAATATATGAACGATAAAATTAAACTTGCACCTTTGGGTAATACGAACTTCTTTCCTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGAATTTTCTTGATTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTGTTTTAAAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCA-CCTAGTTTCCTGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTT---TTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAAATTTTGGAAAGTAACTTTTAAAACAAAACAAAAAAAACAACTCACCATTTTATATCAAT]

[+] EMBL CD080743             [AAGGCCAANAATTTGGCACGAGGCTTGAACCGTTACGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAACTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTnt                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD076446             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTTACACAAGCTTTGCATAAATATATGAACGATAAAATTAAACTTGCACCTTTGGGTAATACGAACTTCTTTCCTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGAATTTTCTTGATTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTCTTTTAAAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCA CCTAGTTTCCTGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTTTTGTTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAAATTTTGGAAA                                                 ]
[-] EMBL CD074668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTTACACAAGCTTTGCATAAATATATGAACGATAAAATTAAACTTGCACCTTTGGGTAATACGAACTTCTTTCCTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGAATTTTCTTGATTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTGTTTTAAAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCA CCTAGTTTCCTGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTT   TTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAAATTTTGGAAA                                                 ]
[-] EMBL CD076275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTTACACAAGCTTTGCATAAATATATGAACGATAAAATTAAACTTGCACCTTTGGGTAATACGAACTTCTTTCCTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGAATTTTCTTGATTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTCTTTTAAAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCA CCTAGTTTCCTGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTTTTGTTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAAATTTTGGAAA                                                 ]
[-] EMBL CD075646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CATTTGCATGTCTATGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTTACACAAGCTTTGCATAAATATATGACCGATAAAATTAAACTTGCACCTTTGGGTAATACGAACTTCTTTCCTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGAATTTTCTTGATTATTATTATTATTAACTCAATTCGATAAATATTTGTATTTATTGTTTTAAAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCA CCTAGTTTCCTGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTT   TTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAAATTTTGGAAA                                                 ]
[-] EMBL CD139836             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CATTCATATAATCCAATATCTTTTACCGAATTTTCTTGATTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTGTTTTAAAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCA CCTAGTTTCCTGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTT   TTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAA                                                                 ]
[-] EMBL CD139670             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTTTCACTATTTTTGTTTGTTTG TTGCACCCTAGTTTCCTGTGTGAACATTTGAGTGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTTTGTTTGTTT   TTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAAATTTTGGAAAGTAACTTTTAAAACAAAACAAAAAAAACAACTCACCATTTTATATCAAT]




>consensus_10001#0
AAGGCCAANAATTTGGCACGAGGCTTGAACCGTTACGAGCAAAACGATTATTATCAATAA
ATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTA
AAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAA
TAAGCACTCTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTA
GTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAA
CTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCT
TATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAA
ATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTC
CTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAG
TTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTT
CTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTC
TTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTTACACAAGCTT
TGCATAAATATATGAACGATAAAATTAAACTTGCACCTTTGGGTAATACGAACTTCTTTC
CTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGAATTTTCTTGA
TTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTGTTTTAAAATGTTGAA
ACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCACCTAGTTTCCTGTGTGAACA
TTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTGTTTTCATGTT
TGTTTGTTTTTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGTATAAAAACAA
ATTTTGGAAAGTAACTTTTAAAACAAAACAAAAAAAACAACTCACCATTTTATATCAAT

consensusID : consensus_10001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 657
fasta sequence

                              [CCGAGCCAAGATTCGGCACGAGGCGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAACTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTG]

[+] EMBL CD082682             [CCGAGCCAAGATTCGGCACGAGGCGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAACTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTG]
[+] EMBL CD082860             [                                             atAATT AAGATTATT CAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAACTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTANAGCAGCATTTGCATGTCTATGGTCTTTTCTTG      ]
[+] EMBL CD139567             [                                                                                                                                                                                                                                                                     TTATAGATGAACTAGATTC TTTTTAACTGCACGTTCTCATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGTTGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACGCAAATCAAAGAACACATATCTTATAAGTACTTCTTAAGGATGACCCAGGTGCTAGAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGT                                                                                     ]




>consensus_10001#1
CCGAGCCAAGATTCGGCACGAGGCGAGCAAAACGATTATTATCAATAAATTCAAGATTAT
TACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTG
CTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTG
TAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCACATTTAGTCTTGCTGAGA
AAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTTTTTTAACTGCACGTTCTC
ATTTGGATAACGAAGCTACACGTATGATGAAAACTCAATTTATGGCCTTATGGGATGGGT
TGATAACAAATAATAATAATACTCAAATAGTAATTGTAGGCGCAACAAATAGACCTGGAG
ATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAGATAAATGTTCCTCTTCCTAACG
CAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAGGATGACCCAGTTGCTAAAGCTC
TCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACTGAAGGACTTTCTGGAAGTGATC
TCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTATGGTCTTTTCTTGAAGGTG

consensusID : consensus_10001#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [GAAAAACGTGAATGTCGTAAACGTGCGCAAGCAATTTTCAAAGCTATTGGGTTGAAGAGTATACCGAAATTAAATGACTATGAAGTATGCGTTGCTGTAAATTTAGTTGATCCACAAGTTTTAAATACAACTTGGAATTCTATCGGAGGTTTGGATTCTATTATCCATGAAATTAAATATGGTGTACTTGAACCGTTACGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGT]

[-] EMBL CD140061             [GAAAAACGTGAATGTCGTAAACGTGCGCAAGCAATTTTCAAAGCTATTGGGTTGAAGAGTATACCGAAATTAAATGACTATGAAGTATGCGTTGCTGTAAATTTAGTTGATCCACAAGTTTTAAATACAACTTGGAATTCTATCGGAGGTTTGGATTCTATTATCCATGAAATTAAATATGGTGTACTTGAACCGTTACGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAATATGTGGT]




>consensus_10001#2
GAAAAACGTGAATGTCGTAAACGTGCGCAAGCAATTTTCAAAGCTATTGGGTTGAAGAGT
ATACCGAAATTAAATGACTATGAAGTATGCGTTGCTGTAAATTTAGTTGATCCACAAGTT
TTAAATACAACTTGGAATTCTATCGGAGGTTTGGATTCTATTATCCATGAAATTAAATAT
GGTGTACTTGAACCGTTACGAGCAAAACGATTATTATCAATAAATTCAAGATTATTACAA
CCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTTGCTCGT
GCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTTGTAAAT
ATGTGGT

consensusID : consensus_10001#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [GAGGGCAAACGTTGCAGAGAAAGTTTACTCAACTACTTATTCAGTCATCCAGTCCACATTGGATAGATTAGAATTTCTAAAAAATTGATCTTTTTTCTGAGATTTCGCGCAAGCAATTTTCAAAGCTATTGGGTTGAAAAGTATACCGAAATTAAATGACTATGAAGTATGCGTTGCTGTAAA]

[+] EMBL CD077450             [GAGGGCAAACGTTGCAGAGAAAGTTTACTCAACTACTTATTCAGTCATCCAGTCCACATTGGATAGATTAGAATTTCTAAAAAATTGATCTTTTTTCTGAGATTTCGCGCAAGCAATTTTCAAAGCTATTGGGTTGAAAAGTATACCGAAATTAAATGACTATGAAGTATGCGTTGCTGTAAA]




>consensus_10001#3
GAGGGCAAACGTTGCAGAGAAAGTTTACTCAACTACTTATTCAGTCATCCAGTCCACATT
GGATAGATTAGAATTTCTAAAAAATTGATCTTTTTTCTGAGATTTCGCGCAAGCAATTTT
CAAAGCTATTGGGTTGAAAAGTATACCGAAATTAAATGACTATGAAGTATGCGTTGCTGT
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10001#0      AAGGCCAANAATTTGGCACGAGGCTTGAACCGTTACGAGCAAAACGATTATTATCAATAA 60
consensus_10001#1      ------------CCGAGCCAAGATTCGGCACGAGGCGAGCAAAACGATTATTATCAATAA 48
consensus_10001#2      ---------------------------------------------------------GAA 3
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      ATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTA 120
consensus_10001#1      ATTCAAGATTATTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTA 108
consensus_10001#2      AAACGTGAATGTCGTAAACGTGCGCAAGCA----ATTTTCAAAGCTATTGGGTTGAAGAG 59
consensus_10001#3      ---------GAGGGCAAACGTTGCAGAGAA----AGTTTACTCAACTACTTATTCAGTCA 47
                                      ** **       *      * ***             **      

consensus_10001#0      AA-ACATTAC-TTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCA 178
consensus_10001#1      AA-ACATTAC-TTGCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCA 166
consensus_10001#2      TATACCGAAA-TTAAATG-ACTATGAAGTATGCGTTGC-TGTAAATTTAGTTGATCCACA 116
consensus_10001#3      TCCAGTCCACATTGGATAGATTAGAATTTCTAAAAAATTGATCTTTTTTCTGAGATTTCG 107
                          *    *  **        **       *              ***  *       * 

consensus_10001#0      AAT---AAGCACT-CTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCA 234
consensus_10001#1      AAT---AAGCACT-CTTGTAAATATGTGGTATGGTGAAACACAAAAATATGTAGAAGCCA 222
consensus_10001#2      AGTTTTAAATACAACTTGGAATTCTATCGGAGGTTTGGATTCTATTATCCAT-GAAATTA 175
consensus_10001#3      CGC---AAGCAATTTTCAAAGCTATTGGGTTGAAAAGTATACCGAAATTAAATGACTATG 164
                             **  *    *   *  * *   *         *  *    **     **     

consensus_10001#0      CATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTT 294
consensus_10001#1      CATTTAGTCTTGCTGAGAAAATTCAACCAACTATTATTTTTATAGATGAACTAGATTCTT 282
consensus_10001#2      AATATGGTGTACTTGAACCGTTACGAGCAAA-ACGATTATTATCAATAAATTCAAGATTA 234
consensus_10001#3      AAGTATGCGTTGCTGTAAA----------------------------------------- 183
                        *    *  *   **                                             

consensus_10001#0      TTTTAACTGCACGTTCTCAT-TTGGATAACGAAGCTACACGT-ATGATGAAAACTCAATT 352
consensus_10001#1      TTTTAACTGCACGTTCTCAT-TTGGATAACGAAGCTACACGT-ATGATGAAAACTCAATT 340
consensus_10001#2      TTACAACCGCCTAAAGGTGTATTACTTTATGGACCTCCTGGTTGTGGTAAAACATTACTT 294
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      TATGGCCTTATGGGATGGGTTG-ATA-ACAAATAATAATAATACTCAAATAGTAATTGTA 410
consensus_10001#1      TATGGCCTTATGGGATGGGTTG-ATA-ACAAATAATAATAATACTCAAATAGTAATTGTA 398
consensus_10001#2      GCTCGTGCTATGGCACATGCTGCACATGCTAATTTTTTGAATCTTCAAATAAGCACTCTT 354
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      GGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAG 470
consensus_10001#1      GGCGCAACAAATAGACCTGGAGATTTAGATCAAGCTATATTACGTCGTTTATCTTTTAAG 458
consensus_10001#2      GT--AAATATGTGGT--------------------------------------------- 367
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      ATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAG 530
consensus_10001#1      ATAAATGTTCCTCTTCCTAACGCAAATCAAAGAAAACATATCTTAAAAGTACTTCTTAAG 518
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      GATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACT 590
consensus_10001#1      GATGACCCAGTTGCTAAAGCTCTCAATGAAAGCGATTTCACGCAGATCGCTAGTAAAACT 578
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      GAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTA 650
consensus_10001#1      GAAGGACTTTCTGGAAGTGATCTCTCTGAACTATGTCGTAAAGCAGCATTTGCATGTCTA 638
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      TGGTCTTTTCTTGAAGGTGGTGATACGCAAGCCAGTTTACTGTTAACTGTAGACCACTTT 710
consensus_10001#1      TGGTCTTTTCTTGAAGGTG----------------------------------------- 657
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      ACACAAGCTTTGCATAAATATATGAACGATAAAATTAAACTTGCACCTTTGGGTAATACG 770
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      AACTTCTTTCCTTTGGGCTGAATTTGTCAATCATTCATATAATCCAATATCTTTTACCGA 830
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      ATTTTCTTGATTATTATTATTATTAACTCAATTCGATATATATTTGTATTTATTGTTTTA 890
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      AAATGTTGAAACATTTCAACATTTTCACTATTTTTGTTTGTTTGTTTGCACCTAGTTTCC 950
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      TGTGTGAACATTTGAATGTTATTCGATGATTGACTCAGTAAAATTATTTTGATTGGATTG 1010
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      TTTTCATGTTTGTTTGTTTTTGTTGTTGTTGTTGTTCATTGAATACATTCCTACGTATGT 1070
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      ATAAAAACAAATTTTGGAAAGTAACTTTTAAAACAAAACAAAAAAAACAACTCACCATTT 1130
consensus_10001#1      ------------------------------------------------------------
consensus_10001#2      ------------------------------------------------------------
consensus_10001#3      ------------------------------------------------------------
                                                                                   

consensus_10001#0      TATATCAAT 1139
consensus_10001#1      ---------
consensus_10001#2      ---------
consensus_10001#3      ---------