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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1008 fasta sequence
[TGTCCTGGGAAGGTATTGGTTACTGAATGCGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT-CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGA-CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT-GAATAATTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAG-AAGG-AAAAAAAGATGATACTTTACTATTTTGTTGCTTTCCACTGAGAAATTCCATA-NNAC-ACTCTCCTACACTTACTCAATTGTTNTATTATGTAAGCTTTTGACTAT-AACACTATGAAACAATTTGTAG-TCTATTTTTAAAATGC-TCGA-TNTGGATACTTTNTTNG-TATTTTNGCTGNTNNGTTTTGTTTG-AAAGACAAAAT]
[-] EMBL CD190276 [TGTCCTGGGAAGGTATTGGTTACTGAATGCGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTTGCAATGTTTGAtgcag ]
[+] EMBL CD189654 [ CGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTt ]
[+] EMBL CD189655 [ CGGCTATTTAGAAAGACAAGGACATATCGGTTATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTt ]
[+] EMBL CD082086 [ aggaccATTTTTACAGTATTTCATTAGACATATGCATTACGAACAAGCAGTCAGACGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGA CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGGNTACTCGACCTTNCTTNCTTNNCTTATTNNGATAGTAAANTAAAT ACANANATTTTGAC AAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAG AAGG ANAAAAAGATGATACTTTACTATNNTGNTGC TTCCACTGAGGAA TNCATA NNAC ACTCT CTACAC TACTCAATGNTNNTA TATGT AGC TTTGACTAT AACACTA ]
[+] EMBL CD179932 [ TCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCG ]
[+] EMBL SMAA8331 [ CAGAAGGATATTTGAAACAGTAGACAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGA ]
[-] EMBL CD096922 [ ttgatcctCAGGAACAGGGACGGAAATATTGATCACCAAGAGCTACAGCTGGCACTATCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCGGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGATCAA ]
[+] EMBL CD082216 [ tccgaggccGATCACCAAGAGCTACAGCTGGCACTATCATTTGGTATAGGTACTCCGCCCAACTCTAGAACTGTCCAGCTGATGATTT CAATGTTTGACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTTCAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAAAATGATGATCAGTCGTTTCGACCGTAATAAACAAGGA CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCTCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT GAATAATTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAG AAAG AAAAAAAGATGATACTTTACTATTTTGTTGCTTTCCACTGAGAAATTCCATANNNAC ACTCTNCTACACTTACTCAATTGTTNTATTATGTAAGCTTTTGACTAT AACACTATGAAACAATTTGTAG TCTATTTTTAAAATGC TCGA TNTGGATACTTTNTTNG TATTTTNGCTGNTNNGTTTTGTTTG AAAGACAA ]
[-] EMBL CD075701 [ CAAGGA CAAATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCCCAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTTCTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTTTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT GAATAAGTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTTTTCAGTAATTTAAATTAACTTTCATTTATTGCATGAG AAGGAAAAAAAAGATGATACTTTACTATTTTGTTGCTTCCCCCTGAGAAATTCCATA AAACAACTTTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACCCTATGA ]
[-] EMBL CD075828 [ ATCGCCTTCGATGACTTTATTTATGCTTGTGTATGTCTCCAAATTCTCACGAACTGCTTTAGACGGTATGATTTAAATAGGAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCATTTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAATAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATT GAATAATTAAATAAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATCTAAATTAACTTTCATTTATTGCATGAGAAAGA AAAAAAAGATGATACTTTACTATTTTGTTGCTTCCCACTGAGAAATTCCATA AAACAACTCTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACACTATG AACAATTTGTAGTTCTATTTTTTAATTGCTTCGATTTTGGATACTTTTTTTGTTATTTTTGCTGTTTGTTTTTGTTTGAAAAGACCCAAT]
consensusID : consensus_10003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[AATATCGGTTATTTANACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGNACGGNATTATTGANCACCAAGAGCTACAGNTGGCACTATCAANTGGTATAGGTNCTCCCATCAACTCTAGAACTGTCCAGCTGATGATTTCAATGNNNGACCAAGACAGGAATGGNACCATTGANTNGNGAGAGTTCGTCTATTTATTTAANTNTGTCCAGGATTGGCAACGGTGTNTTCGTCANTATGATCAGGACAGTTCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGGGNGGGTTATCGCCTCTCTCCTTCTT]
[+] EMBL SM6901 [AATATCGGTTATTTANACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTGAAACAGTAGACAGGAACAGGGNACGGNATTATTGANCACCAAGAGCTACAGNTGGCACTATCAANTGGTATAGGTNCTCCCATCAACTCTAGAACTGTCCAGCTGATGATTTCAATGNNNGACCAAGACAGGAATGGNACCATTGANTNGNGAGAGTTCGTCTATTTATTTAANTNTGTCCAGGATTGGCAACGGTGTNTTCGTCANTATGATCAGGACAGTTCTGGATTAATCGATGCTCGAGAGTTCCAAAGTGCATTGTCTTGGGNGGGTTATCGCCTCTCTCCTTCTT]
consensusID : consensus_10003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[ACTTTACTATTTTGTTGCTTCCCACTGAGAAATTCCATAAAACAACTCTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACACTATGAACAATTTGTAGTTCTATTTTTTAATTGCTTCGATTTTGGATACTTTTTTTGTTATTTTTGCTGTTTGTTTTTGTTTGAAAAGACCAATATTGTTTTTACTTTATTGTCTTTTTGTTTACTTTGTGAATATCCAAAAT]
[+] EMBL SMAA43879 [ACTTTACTATTTTGTTGCTTCCCACTGAGAAATTCCATAAAACAACTCTCCTACACTTACTCAATTGTTTTATTATGTAAGCTTTTGACTATAAACACTATGAACAATTTGTAGTTCTATTTTTTAATTGCTTCGATTTTGGATACTTTTTTTGTTATTTTTGCTGTTTGTTTTTGTTTGAAAAGACCAATATTGTTTTTACTTTATTGTCTTTTTGTTTACTTTGTGAATATCCAAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10003#0 TGTCCTGGGAAGGTATTGGTTACTGAATGCGGCTATTTAGAAAGACAAGGACATATCGGT 60
consensus_10003#1 ---------------------------------------------------AATATCGGT 9
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 TATTTTTACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTG 120
consensus_10003#1 TATTTANACAGTATTTCATTAGACATATGCAAGACGAACAAGCAGTCAGAAGGATATTTG 69
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 AAACAGTAGACAGGAACAGGGA-CGGAAATATTGATCACCAAGAGCTACAGCTGGCACTA 179
consensus_10003#1 AAACAGTAGACAGGAACAGGGNACGGNATTATTGANCACCAAGAGCTACAGNTGGCACTA 129
consensus_10003#2 -----------------------------------ACTTTA----CTATT-TTGTTGCTT 20
* * *** ** **
consensus_10003#0 TCAAATGGTATAGGTACTCCGTTCAACTCTAGAACTGTCCAGCTGATGATTTCAATGTTT 239
consensus_10003#1 TCAANTGGTATAGGTNCTCCCATCAACTCTAGAACTGTCCAGCTGATGATTTCAATGNNN 189
consensus_10003#2 CCCACTGAGA-AATTCCATAAAACAACTCTCCTAC-ACTTACTCAATTGTTTTATTATGT 78
* * ** * * * * ******* ** * ** *** * *
consensus_10003#0 GACCAAGACAGGAATGGAACCATTGATTTGAGAGAGTTCGTCTATTTATTTAAATATGTT 299
consensus_10003#1 GACCAAGACAGGAATGGNACCATTGANTNGNGAGAGTTCGTCTATTTATTTAANTNTGTC 249
consensus_10003#2 AAGCTTTTGACTATAAACACTATGAACAATTTGTAGTTC---TATTT-TTTAATTGCTTC 134
* * * * ** ** * ***** ***** ***** * *
consensus_10003#0 CAGGATTGGCAACGGTGTTTTCGTCAATATGATCAGGACAGATCTGGATTAATCGATGCT 359
consensus_10003#1 CAGGATTGGCAACGGTGTNTTCGTCANTATGATCAGGACAGTTCTGGATTAATCGATGCT 309
consensus_10003#2 ---GATTTTGGATACTTTTTTTGTTATTTTTGCT--GTTTGTTTTTGTTTGA--AAAGAC 187
**** * * * ** ** * * * * * * * * ** * * *
consensus_10003#0 CGAGAGT-TCCAAAGTGCATTGTCTTGTTTTGGTTATCGACTCTCTCCTTCTTTTATAAA 418
consensus_10003#1 CGAGAGT-TCCAAAGTGCATTGTCTTGGGNGGGTTATCGCCTCTCTCCTTCTT------- 361
consensus_10003#2 CAATATTGTTTTTACTTTATTGTCTTTTTGTTTACTTTGTGAATATCCAAAAT------- 240
* * * * * * * ******** * * * *** *
consensus_10003#0 AATGATGATCAGTCGTTTCGACCGTAATAAACAAGGACAAATCGCCTTCGATGACTTTAT 478
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 TTATGCTTGTGTATGTCTCCAAATTCCCACGAACTGCTTTAGACGGTATGATTTAAATAG 538
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 GAATGGATATGCACAATTCAGTTTTGAAGAATTTTTGTCTTCTGCTATGTCTATAATCAT 598
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 TTAATAAATAAAAACCAATTGGTTACTGTACAGAAGAAAAATACAGATGACCATTATCAA 658
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 TAACTTCATTTCTGCATTGTTTACTCGACCTTCCTTCCTTCCTTTATTGAATAATTAAAT 718
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 AAATAACAAAAAATTGAACAAAGGAGAGAGATAAGCATAATTATAATTTCTTCAGTAATC 778
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 TAAATTAACTTTCATTTATTGCATGAGAAGGAAAAAAAGATGATACTTTACTATTTTGTT 838
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 GCTTTCCACTGAGAAATTCCATANNACACTCTCCTACACTTACTCAATTGTTNTATTATG 898
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 TAAGCTTTTGACTATAACACTATGAAACAATTTGTAGTCTATTTTTAAAATGCTCGATNT 958
consensus_10003#1 ------------------------------------------------------------
consensus_10003#2 ------------------------------------------------------------
consensus_10003#0 GGATACTTTNTTNGTATTTTNGCTGNTNNGTTTTGTTTGAAAGACAAAAT 1008
consensus_10003#1 --------------------------------------------------
consensus_10003#2 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||