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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1060 fasta sequence
[NTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTATCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG-AATCAAAG-AACTGATGAACATTTTCTCGTCATCAATATCGNGAGGCATTCTCGAAATATATGATATTTTATCTTGTGAGANATCATCAT]
[-] EMBL CD202762 [NTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGACGTCTTGCACCGGTGACGTGGATCGGCCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGAT ]
[+] EMBL CD154815 [ CAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGAATATTCGTTTGCTAGTGTTTTTTCGTT ]
[-] EMBL CD091779 [ GTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCATGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTATCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTAACCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGT ]
[-] EMBL CD148619 [ TCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCTCTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTATCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGC ]
[+] EMBL CD061469 [ CGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCGTCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATTGTATGTTTGGATGTTTTCTCCAGTGCGTTGCTTTTGG ]
[+] EMBL CD139968 [ TGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCACAG AACTGATGAACATT ]
[+] EMBL CD140018 [ TGGCGAATATTTGCAATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAATGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAGAAATC AAG AA ]
[+] EMBL CD070517 [ GCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCAAAG AACTGATGAACATTTTCTCGTCATCAATATCGNGAGGCATTCTCGAAATATATGATATTTTATCTTGTGAGANATCATCAT]
[+] EMBL CD070532 [ GCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTGCTTGGTTCGATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCAAAG AACTGATGAACATTTTCTCGTCATCAATATCGGGA ]
[+] EMBL CD070572 [ GCAGTCTTTGATAAGCGTTTCTGATTTTAGTTTACTTGGATCGATGGTTTCCAATTCTTCACTTGATANACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTTGTCGAGGTGGTGGTAG AATCATAGAAACTGATG ACATTTTCTCGTCATCAA ]
[+] EMBL CD201598 [ nncncaTCTGATTTTNNTTTACTTGGTTCNATGGTTTCCAATTCTTCACTTGATAAACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCANGGTTGTCAAGGTG ]
consensusID : consensus_10006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[CTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATNTGTATGTTTGGAGAGGCACAGAN]
[-] EMBL CD112885 [CTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATNTGTATGTTTGGAGAGGCACAGAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10006#0 ----NTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACAT 56
consensus_10006#1 CTCTCTACACCAATCTCCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACAC 60
******************************************************
consensus_10006#0 CAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCT 116
consensus_10006#1 CAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCT 120
************************************************************
consensus_10006#0 TTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACA 176
consensus_10006#1 TTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACA 180
************************************************************
consensus_10006#0 TTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTG 236
consensus_10006#1 TTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTG 240
************************************************************
consensus_10006#0 CAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATA 296
consensus_10006#1 CAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATA 300
************************************************************
consensus_10006#0 GTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGC 356
consensus_10006#1 GTCGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGC 360
************************************************************
consensus_10006#0 CCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATG 416
consensus_10006#1 CCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATG 420
************************************************************
consensus_10006#0 TGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATC 476
consensus_10006#1 TGCTGCACGCAATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATC 480
************************************************************
consensus_10006#0 CATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATT-GTATGTTTGGATG 535
consensus_10006#1 CATCTGATTGTTCATATCTGTTGAAATCGTCGTGTATTTGGAAATNTGTATGTTTGGAGA 540
********************************************* ***********
consensus_10006#0 TTTTCTCCAATGCGTTGCTTTTGGCTTCATTCTCTTTAGATTCTTCCGTTGATTTTCTCT 595
consensus_10006#1 GGCACAGAN--------------------------------------------------- 549
*
consensus_10006#0 CTGCTGGATATTCGTTTGCTAGTGTTTTTTCGTTCATTGTGACGTTATTGTTTTGGTTTA 655
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 TCGTTATTATGTTTTCATCTTGTTCCTTGCTTTTCAGGTTGTCTCTGGCGAATATTTGCA 715
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 ATGGACTATCGGGTTGTTCGTTAGAGGATATGTTTGTTTCTTCTGAGTATCCTGTAGCAA 775
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 TGTATCCTTTTGTGTTTGAAGACCACTCCATATGTTTAGGTGTGCTATTTATGCAGTCTT 835
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 TGATAAGCGTTTCTGATTTTAGTTTACTTGGTTCGATGGTTTCCAATTCTTCACTTGATA 895
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 AACTGCGTAACATTACAGGAATATCTGATGCTGATTCACCGAATATCATACTGCAGGGTT 955
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 GTCGAGGTGGTGGTAGAATCAAAGAACTGATGAACATTTTCTCGTCATCAATATCGNGAG 1015
consensus_10006#1 ------------------------------------------------------------
consensus_10006#0 GCATTCTCGAAATATATGATATTTTATCTTGTGAGANATCATCAT 1060
consensus_10006#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||