cluster # 10008

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Schistosoma mansoni
cluster # 10008 cluster # 10008 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10008#0 length = 770 sequences # 6

consensus_10008#1 length = 604 sequences # 7

consensusID : consensus_10008#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 770
fasta sequence

                              [GAGGCCAGAATTCGGCACGAGGCCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATTTTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTCTAA-GAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGGTTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTTGGTAGACGTGTTACATAAATATAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATAAAATTGCATTTAACTAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD079359             [GAGGCCAGAATTCGGCACGAGGCCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATTTTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTCTAA GAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGGTTNTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTTGGTAGACGTGTTACATANATATAACTTATCANATTGTATGGGAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATAAAtt                              ]
[-] EMBL CD077150             [                                                                   AGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTTTCGGATTTGCAACGCAAGTGTTTTCGGTTGTGCCCAGCCGGTCCAGCAACCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATTTTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTTTAA AAAAAGTAACTTGTGGTTCTGTTTTCCAGATAATACCTTTTC                                                                                                                                                                                                                                       ]
[-] EMBL CD073636             [                                                                        AAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATTTTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTCTAA GAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGGTTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTTGGTAGACGTGTTACATAAATATAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATAAAATTG                            ]
[-] EMBL AI395224             [                                                                                                                                                                                                                                                                                                                                                                                       ACTT TCGCCGTAGAGGTC TTTTTGTGGTTCCAGCTGA GGCTTCGTCTCGTTACCTATTTTGACCTAATCTTTCAAAT ATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTCTAA GAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGGTTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTTGGTAGACGTGTTACATAAATATAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATAAAATTGCATTTAACTAAAAAAttaa         ]
[-] EMBL AI395504             [                                                                                                                                                                                                                                                                                                                                                                                                                    TTCCAGCTGA GGCTTCGTCTCGTTACCTATTTTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTCTAA GAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGGTTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTCGGTAGACGTGTTACATAAATATAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATAAAATTGCATTTAACTAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395507             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTAATCTNTC AATAATTTTTACCGTTTCCTGTGTAGTCTCCCATTTTGTTTCTAAGGAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGGTTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTCGGTAGACGTGTTACATAAATATAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATAAAATTGCATTTAACTAAAAAAAAAAAAAAAAA  ]




>consensus_10008#0
GAGGCCAGAATTCGGCACGAGGCCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGAC
GACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAA
TGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCAT
CGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTT
TGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGG
ATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTA
CATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTT
CGTCTCGTTACCTATTTTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTC
TTCCATTTTGTTTCTAAGAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCC
AGAAACGATACTCTTCACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGAT
ACCAAAAGTTGTTAGGTTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTTGGTAG
ACGTGTTACATAAATATAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAA
ACTATCCTATTGAATAAAATTGCATTTAACTAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10008#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 604
fasta sequence

                              [TGCATGCAGACGTGGAGTCGCAGAACCTTTGTCTACAGATCACAAACCAACTCTACGTGCTGAGAAAGAGCGTATTTCTGCTGCTGGTGGTTGGGTCGATGCAAAACGTGTGAATGGGAACCTTGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGCCGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATTTGAT]

[+] EMBL CD112739             [TGCATGCAGACGTGGAGTCGCAGAACCTTTGTCTACAGATCACAAACCAACTCTACGTGCTGAGAAAGAGCGTATTTCTGCTGCTGGTGGTTGGGTCGATGCAAAACGTGTGAATGGGAACCTTGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGCCGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCC                                                                                                             ]
[+] EMBL CD083296             [     gtAGACGTGGAGTCGCAGAACCTTTGTCTACAGATCACAAACCAACTCTACGTGCTGAGAAAGAGCGTATTTCTGCTGCTGGTGGTTGGGTCGATGCAAAACGTGTGAATGGGAACCTTGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGCCGAAAACCAAATCGTAGCTGCTAATCCGGATGTTTATGTGCGACGACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTGAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAA                                                                                                                                                                                                                                                                ]
[-] EMBL BG930803             [                                                                                                                      AACCTTGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGCCGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATCTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATTTGAT]
[+] EMBL CD171551             [                                                                                                                           TGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGCCGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCA                                                                                                                                                                                                                   ]
[+] EMBL CD096616             [                                                                                                                                                TGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGCCGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGACGATGAATTTAT                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BG932207             [                                                                                                                                                                                                                                                                        CGATGGTATATGGGATGTAATGACAAATCAGGAAGTTGTAAGCTTTGTTCGCCTGCGACTCAGTTATAGTATGCTTCCATCGAAAGTGTGTGAAGAATTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAACTTATCGCCG                                                      ]
[-] EMBL CD077379             [                                                                                                                                                                                                                                                                                                                                       TTATGGTATGCTTCCATCGAAAGTGTGTGAAGAACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACATGACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTGTTCTCGGTCGAGCCCAGCCGGTCCAGCAGCCGATATAGGAGGTACATGAAGCTATGGGAACTTATCGCCGT                                                     ]




>consensus_10008#1
TGCATGCAGACGTGGAGTCGCAGAACCTTTGTCTACAGATCACAAACCAACTCTACGTGC
TGAGAAAGAGCGTATTTCTGCTGCTGGTGGTTGGGTCGATGCAAAACGTGTGAATGGGAA
CCTTGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGC
CGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGA
CGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGT
TGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGA
ACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACAT
GACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTG
TTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAA
CTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATT
TGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10008#0      ------------------------------------------------------------
consensus_10008#1      TGCATGCAGACGTGGAGTCGCAGAACCTTTGTCTACAGATCACAAACCAACTCTACGTGC 60
                                                                                   

consensus_10008#0      ------------------------------------------------------------
consensus_10008#1      TGAGAAAGAGCGTATTTCTGCTGCTGGTGGTTGGGTCGATGCAAAACGTGTGAATGGGAA 120
                                                                                   

consensus_10008#0      ------------------------------------------GAGGCCAGA--ATTCGGC 16
consensus_10008#1      CCTTGCATTGTCACGAGCTTTCGGTGATTTTGTCTTCAAGCGTAACCCACATCAGTCTGC 180
                                                                  *  *** *  * ** **

consensus_10008#0      ACGAGGCCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGA 76
consensus_10008#1      CGAAAACCAAATCGTAACTGCAAATCCGGATGTTTTTGTTCGACGACTTTCAGTCGAAGA 240
                          *  ******************************************************

consensus_10008#0      CGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGT 136
consensus_10008#1      CGATGAATTTATTGTGCTGTGTTGCGATGGTATATGGGATGTAATGACAAATCAGGAAGT 300
                       ************************************************************

consensus_10008#0      TGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGA 196
consensus_10008#1      TGTAAGCTTTGTTCGCCTGCGACTCAGTTATGGTATGCTTCCATCGAAAGTGTGTGAAGA 360
                       ************************************************************

consensus_10008#0      ACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACAT 256
consensus_10008#1      ACTTATGATGCGATGTTTAGCACCTGATTGTCATACAAATGGTTTGGGCTGTGATAACAT 420
                       ************************************************************

consensus_10008#0      GACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTG 316
consensus_10008#1      GACTGTCGTTCTGGTCTGTCTCTTACAAGGGCGTCCGTTCTCGGATTTGCAACGCAAGTG 480
                       ************************************************************

consensus_10008#0      TTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAA 376
consensus_10008#1      TTCTCGGTCGTGCCCAGCCGGTCCAGCAGCCGATATTTTAGGTACATGAAGCTATGGGAA 540
                       ************************************************************

consensus_10008#0      CTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATT 436
consensus_10008#1      CTTATCGCCGTAGAGGTCTTTTTTGTGGTTCCAGCTGAGGGCTTCGTCTCGTTACCTATT 600
                       ************************************************************

consensus_10008#0      TTGACCTAATCTTTCAAATAATTTTTACCGTTTCCTGTGTAGTCTTCCATTTTGTTTCTA 496
consensus_10008#1      T-GAT------------------------------------------------------- 604
                       * **                                                        

consensus_10008#0      AGAAAAGTAACTTGTGGTTCTGTCTTCCAGATAATACATTTTCCAGAAACGATACTCTTC 556
consensus_10008#1      ------------------------------------------------------------
                                                                                   

consensus_10008#0      ACTGCATGCTACAATTTTAAAAATTCGGGGAGTTTCGGGATGATACCAAAAGTTGTTAGG 616
consensus_10008#1      ------------------------------------------------------------
                                                                                   

consensus_10008#0      TTTTACCATGCTTGTTGGGCGCTATGCATTATCCTTGTTGGTAGACGTGTTACATAAATA 676
consensus_10008#1      ------------------------------------------------------------
                                                                                   

consensus_10008#0      TAACTTATCAAATTGTATGGAAGTTTGCTTATCAAGGTAAGTAAACTATCCTATTGAATA 736
consensus_10008#1      ------------------------------------------------------------
                                                                                   

consensus_10008#0      AAATTGCATTTAACTAAAAAAAAAAAAAAAAAAA 770
consensus_10008#1      ----------------------------------