These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 446 fasta sequence [TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTCAAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT-CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG-ACAAA-CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGACCCCGCGTCCATCACAATAC] [-] EMBL CD134491 [TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTCAAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTTGTGCT CGGc ] [-] EMBL AI820461 [ ACCAGTTTATTTGGGTATAAATTTACTTCCAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAA CTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCAC ] [-] EMBL AI740271 [ ATTAGGATATAAATTTACTTCAAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATTTCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAATTTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCAC ] [-] EMBL SMAA25727 [ CGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCCTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTTGCGCAATCTTTTTGACCCTATGCATGCGATGTCTTGNACAAAGCGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAANCCTTTCGATTATATACCTCGAAGCTGTCTTCACTGTCTTTGTTCGGACTCGACCCatgacc ] [-] EMBL BG931444 [ tgaGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGAa ] [+] EMBL BG931284 [ GTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA ] [+] EMBL BG931869 [ GTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGCCTTTGTTCGGACTCGAGCACGCGTCCATC ] [+] EMBL BG930365 [ aTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA ] [+] EMBL BG930982 [ cTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGACCCCCCGTCCATCACAATAC] [+] EMBL BG930663 [ cTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGCTTGTATGGAAGTCTTGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA ] [+] EMBL BG930161 [ tTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGGTAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATTTGTTTGTATGGAAGTCTCGGGTCAGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGGACTCGA ] [+] EMBL CD136271 [ CTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGGCCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTT CGCAATCTTTTTGACCCTATGCATGCGATGTCTTG ACAAA CGAATT ] consensusID : consensus_10012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence [AAAACTGAGTGGTCATGGGTCGAGTCCGAACAAAGACAGTGAAGAAAGCTTCGAGGTATATAATCGGAAAGGTTTACTTCAAACTTGACCCGAGAGAGTCCAATACCAAC] [+] EMBL SM58066 [AAAACTGAGTGGTCATGGGTCGAGTCCGAACAAAGACAGTGAAGAAAGCTTCGAGGTATATAATCGGAAAGGTTTACTTCAAACTTGACCCGAGAGAGTCCAATACCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10012#0 TTTGTTTTTTTGTTTTTTTTTTAGTTTTTAAACCAGTTTATTAGGATATAAATTTACTTC 60 consensus_10012#1 ------------------------------------------------------------ consensus_10012#0 AAAACAGGTTAGACCAAACGTATGTTCTTCGCATGAGCAACGTTCATGCTTTGCAACATT 120 consensus_10012#1 ------------------------------------------------------------ consensus_10012#0 TCTCGTGCTACGGGGTCAATTTCAAGGGCCATAGAATCAAATATTGAAACCTCCGGCTGG 180 consensus_10012#1 ------------------------------------------------------------ consensus_10012#0 TAGTTGTCTCTTCGTTCTCTTTCTTCTTCCTGAAGCTTAATACTAATACCACGCACAGGG 240 consensus_10012#1 ------------------------------------------------------------ consensus_10012#0 CCAGCTTCGAAACGCTTCATCAAATGAGTCACATAACCTGCGATCATGTTTCGCAATCTT 300 consensus_10012#1 ------------------------------------------------------------ consensus_10012#0 TTTGACCCTATGCATGCGATGTCTTGACAAACGAATTTGTTTGTATGGAAGTCTCGGGTC 360 consensus_10012#1 --------------------------AAAACTGAGTGGTCATGGGTCGA-GTCCGAACAA 33 * ** ** * ** * ** *** consensus_10012#0 AGTTTGGAGTAAAACCTTTCGATTATATACCTCGAAGCTTTCTTCACTGTCTTTGTTCGG 420 consensus_10012#1 AGACAGTGAAGAAAGCTTCGAGGTATATAATCGGAAAGGTTTACTTCAAACTTGACCCGA 93 ** * *** *** ****** *** ** * *** ** consensus_10012#0 ACTCGACCCCGCGTCCATCACAATAC 446 consensus_10012#1 G--AGAGTCCAATACCAAC------- 110 ** ** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||