These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1047 fasta sequence [TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATAT-ATCTATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTATTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGTTCAAGGCCAAA-TTAATATCTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTT-ATACTGGATTTTCGGATCCAATTG-AATGATTTTCTCAACAAAAAAA-AAAATTATTTTTCTAACATCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTATTTTCCTTACCTTCTTAATCTCATTGAATGGCGATACC] [+] EMBL CD111416 [TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATATAATCTATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAACAGCCATCATGATAACCTTGACGATCACGTGTATTCGAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTGGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACGAGTACAA ] [+] EMBL CD111580 [TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATAT ATCTATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAA ] [-] EMBL CD129754 [ ATGCTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGTTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAGTCATGCATCTTCAAATAGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACA ] [+] EMBL CD083471 [ CTTGTGGTGGCTCAACAGGCTCTAAAGATTTAGCTTCTGTAGAT AACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATTGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTA ] [-] EMBL CD133386 [ TAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCTTGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATT ] [+] EMBL CD183298 [ GTAACCAAAAGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATAT ] [+] EMBL CD183264 [ AGCCATCATGATAACCTTGACGATCACGTGTATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAAT ] [+] EMBL CD155027 [ CTGATTTCCGTATACGAACAGATTCAATAGCACATAATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACGAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCT ] [+] EMBL CD178152 [ CATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAAACCAGTTGGTGTAAATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACAGATCAATCCTCGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTATTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGTTCAAGGCCAAA TTAATATCTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTT ATACTGGATTTTCGGATCCAATTG AATGATTTTCTCAACAAAAAAA AAAATTATTTTTCTAACATCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTA ] [+] EMBL CD164364 [ TTACATTNTGGCAGACGATAAGGAGTTTACATGAAGCTCGAACTAATCCAG TGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAGGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGACGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAA ] [-] EMBL CD143187 [ AGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGACCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAGTTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCCATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTTGTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTTGAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATT ] [-] EMBL CD147850 [ aATATTCCTAATACACCAGGCAATTCTTTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTATTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGTTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTGTAAGTCTTTTTTATGTTATTAATTCATTTTTGTTTGTTTTCCTTACCTTCTTAATCTCATTGAATGGCGATACC] consensusID : consensus_10019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [GATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGCTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTTAAATATTGAGTGAGCGACAATTAGAAGTTCAGTCCATTGA] [+] EMBL CD154536 [GATACCTTAGATACTACATGGATATTTGATCCTGTCGCTTGGAAATGGCGCTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACATTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAATACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCTTACATTTTATTATTCTTAAATATTGAGTGAGCGACAATTAGAAGTTCAGTCCATTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10019#0 TGTAGTATCCAGTTATTTACAATCTTCTGATTTTCCGGATATATCTATGCTTGTGGTGGC 60 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 TCAACAGGCTCTAAAGATTTAGCTTCTGTAGATAAACTGACATGTGAGGCACTGGGATCT 120 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 TGGCTCATCAATCATGAAGTGGTAACCAAAAGCCATCATGATAACCTTGACGATCACGTG 180 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 TATACAAATGGCTCTCGGAAAAGTTCTGATTTCCGTATACGAACAGATTCAATAGCACAT 240 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 AATCATGCATCTTCAAATGGTTCTGGTCTATCAAGTGTTACATTTTGGCAGACGATAAGG 300 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 AGTTTACATGAAGCTCGAACTAATCCAGTTGGTGTAGATCTTAGTGGTCTTCAACAAGGA 360 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 CCGCTTATCACAAGTACAAACGGATCAATCCTTGTTGCTGGCGGAGTATCAGGCGCACAG 420 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 TTTCTATCTTCTGTTGAAGCCTACATTCCAGATAGAGATGAATGGGTTTATATGCCGTCC 480 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 ATGTTACAGGGTCGTCGTGAAGCATGTGCTAATGTTTTGACGTCACGAAATCTAATCGTT 540 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 GTTATCGGTGGAGTTGTCAATACAAACACTACATATACTACTAGTCAAAATGTAACTGTT 600 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 GAAGCATTGGATCCTCGTTGTGACACTTGGTTTTATATTCCTAATACACCAGGCAATTCT 660 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 TTTGGACAAATTCGTGGTGCCAGTTTAACATATTGTCCAAATTCTAAAGATAATTTACTA 720 consensus_10019#1 ------------------------------------------------------------ consensus_10019#0 TTAGTTGGTGGATATAATGGTCAAGATACCTTAGATACTACATGGATATTTGATCCTGTC 780 consensus_10019#1 ------------------------GATACCTTAGATACTACATGGATATTTGATCCTGTC 36 ************************************ consensus_10019#0 GCTTGGAAATGGCGTTCAAGGCCAAATT-AATATCTGCTCGTTCCAGTTGTTGTACAACA 839 consensus_10019#1 GCTTGGAAATGGCGCTCAGGGCCAAATTTAATATTTGCTCGTTCCAGTTGTTGTACAACA 96 ************** *** ********* ***** ************************* consensus_10019#0 TTAACATCAGATCAACGTTATAATTTAGTATTTTGTTGTTATAATCCATTGAAATTTA-T 898 consensus_10019#1 TTAACATCAGATCAACGTTATAATTTAGTATTTGGTGGTTATAATCCATTGAAATTTAAT 156 ********************************* ** ********************* * consensus_10019#0 ACTGGATTTTCGGATCCAATTGAA-TGATTTTCTCAACAAAAAAAAA-AATTATTTTTCT 956 consensus_10019#1 ACTGGATTTTCGGATACAATTGAAATGATTTTCTAAACAAAAAAAGATAATTATTTTTCT 216 *************** ******** ********* ********** * ************ consensus_10019#0 AACATCTTATTATTCTGGAAGGCTTTTTTATGTTATTAATCCAATTTTGGTTATTTTCCT 1016 consensus_10019#1 TACATTTTATTATTCTTAAATA-TTGAGTGAGCGACAATTAGAAGTTCAGTCCATTGA-- 273 **** ********** ** ** * * * * * ** ** ** ** consensus_10019#0 TACCTTCTTAATCTCATTGAATGGCGATACC 1047 consensus_10019#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||