These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1203 fasta sequence [GTTTATGGCATTCTTCAAATCCCTGAAGGATCCTG-G-ATGTGTCGACAGTGTGAG-GCGGGTGTCAAATCAACCACCCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC-CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATTCAAATTCCTTTCGCTCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTCCCACTTGAATATCTGGTTGGATAATGACTCCATGAAAATGCACTTGGGAAATTCAGCTTTTCTAAATGAAGGTGAACATAGACACGTTCCTAATGACTTTCGTGCAGCCATTTTCGTTTACTGGCGTTTAAAAAGGCGGGCAAACTTTAACCAACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCTGATCAAGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAAAGCATTTGAGTCATTCAAACGTATTAGATTCGGTCTTGACAGGGCTAGATTAATGGCAGATATGGTCTTGCAAAGAG-AACGACGGAAATTAGCTCTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTCACCTGTTTATACTGTTAATGAAA] [+] EMBL CD140850 [GTTATTGGCATTCTTCATATCCCTGATGGATCCTGAGTATGTGTCGACAGTGTGAGTGCGGGTGTCAAATCAACCACCCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGG TCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATT ] [+] EMBL CD140845 [ TATGGCATTCTTCAAATCCCTGAAGGATCCTG G ATGTGTCGACAGTGTGAG GCGGGTGTCAAATCAACCACTCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTG ] [+] EMBL CD140779 [ TATGGCATTCTTCAAATCCCTGAAGGATCCTG G ATGTGTCGACAGTGTGAG GCGGGTGTCAAATCAACCACCCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATTCAAATTCCTTTCGCTC ] [+] EMBL CD180907 [ CGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGTTGTGATTCAAATTCCTTTCGCGCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTCCC ] [-] EMBL CD140805 [ CCATTATAAAACTAGACAATATACCACAAGTTAGACGAAACCTTTAGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATTCAAATTCCTTTCGCTCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTCCCACTTGAATATCT ] [+] EMBL CD091754 [ CATTCCNCGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGTTGTGATTCAAATTCCTTTCGCGCTCTGATTTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTCTCATAATTTGGTGCAAGAGTCCCACTTGAATATCTGGTTGGATAATGACTCCATGAAAATGCACTTGGGAAATTCAGCTTTTCTAAATGAAGGTGAACATAGACACGTTCCTAATGACTTTCGTGCAGC ] [+] EMBL CD067127 [ TGGAATGCAACCAGTAGCCTTAACGCGTTAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTTCCACTTGAATATCTGGTTGGATAATGACTCCATGAAAATGCACTTGGGAAATTCACCTTTTCTAAATGAATGTGAACATATACACGTTCCTAATGACATTCGGGCGGCCATTTTCGTTTACTGGCGTTTAAAAAGGCGGGCAAACTTTAACCAACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCCGATCAAGTAGCTGCCACGACCAA ] [+] EMBL AI975056 [ AAGGCGGGCAAACTTTAACCAACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCTGATCAAGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAAAGCATTTGAGTCATTCAAACGTATTAGATTCGGTCTTGACAGGGCTAGATTAATGGCAGATATGGTCTTGCAAAGAG AACGACGGAAATTAGCTCTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTCACCTGTTTATACTGTTAATGAAA] [+] EMBL CD077925 [ gaggcacACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCTGATCAAGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAAAGCATTTGAGTCATTCAAACGTATTAGATTCGGTCTTGACAGGGCTAGATTAATGGCAGATATGGTCTTGCAAAGAGAAACGACGG AATTAGCTNTGTTTAAGAGAATGTGGCGTATATCTGAAATC ] consensusID : consensus_10029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1172 fasta sequence [AGGCCAANATTCGGCACGAGGCTTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTTCACCTGTTTATACTGTTAATGAAAACAACTCTAGTTTTTCGCAGACTTCTATGCCTAATGCAACTATAAAAGTAAACGAAAGCATCGATTCATTCAATATTAGTGCTATTCCTAAAGAATGTCTCATTGTTTCCGATACAATTAAACAGAGACTTCGTTCTGCGTTAACATTAGTCGCGGAAAATTGTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCCAATCATAAGCGTAAAACGAACAATCATTATATCAAATCACATAAGTCTCTTTCACTTAATCGATTTGAACGTTCACCCCTC-AGATCTCATTGTTCTTCACCATTAACTTCATCAACTAAAATAAATAAGCCATCAGAAAATGATATGCCTATTGTTCAAGTGAAATTATCGCCAATTTCAGATAAAGCATCATTTAATTATGTTAAAAATGTAAATAGTAGTAATAATAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAGTCATTCTATTCCTGTTCTTACTAAATTAGCAATGATTACTTTATCACCTGGAGCTGCTAAATTTCTATGAGCCTTTCTTTCACACAAGATTTTAGCTATATAATTTCTCTGATCTTGTATATATAATATACTGTATAATTGTATTATATGGTTAGAACTTATCATTGAACATATCTCTTTTATATCCTGTACATAATTTTGTTTACTTTCTCAGATAATTTATTTTCTGTTAAATTGGTTTTATTACTTCACGATAACACTATGTATGGCGATCTATTCTGTAATCCTTTCAACATATTGTTATCGTGTTAATATTTTATTTTTTTGCTTTCTATGTATTGTTTCTGAGATATTTTGTTACACATGTTTCTTCATGTATTCGATACTTGCAAAAACAAAGAGTT] [+] EMBL CD083223 [AGGCCAANATTCGGCACGAGGCTTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTTCACCTGTTTATACTGTTAATGAAAACAACTCTAGTTTTTCGCAGACTTCTATGCCTAATGCAACTATAAAAGTAAACGAAAGCATCGATTCATTCAATATTAGTGCTATTCCTAAAGAATGTCTCATTGTTTCCGATACAATTAAACAGAGACTTCGTTCTGCGTTAACATTAGTCGCGGAAAATTGTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCCAATCATAAGCGTAAAACGAACAATCATTATATCAAATCACATAAGTCTCTTTCACTTAATCGATTTGAACGTTCACCCCTC AGATCTCATTGTTCTTCACCATnnt ] [-] EMBL CD067234 [ GTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCCAATCATAAGCGTAAAACGAACAATCATCATATCAAATCACATAAGTCTCTTTCACTTAATCGATTTGAGCGTTCA CCCTCAAGATCTCATTGTTCTTCACCATTAACTTCATCAACTAAAATAAATAAGCCATCAGAAAATGATATGCCTATTGTTCAAGTGAAATTATCGCCAATTTCAGATAAAGCATCATTTAATTATGTTAAAAATGTAAATAGTAGTAATAATAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAG ] [-] EMBL CD066306 [ ATCTCATTGTTCTTCACCATTAACTTCATCAACTAAAATAAATAAGCCATCAGAAAATGATATGCCTATTGTTCAAGTGAAATTATCGCCAATTTCAGATAAAGCATCATTTAATTATGTTAAAAATGTAAATAGTAGTAATAATAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAGTCA ] [-] EMBL CD076794 [ AAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAGTCATTCTATTCCTGTTCTTACTAAATTAGCAATGATTACTTTATCACCTGGAGCTGCTAAATTTCTATGAGCCTTTCTTTCACACAAGATTTTAGCTATATAATTTCTCTGATCTTGTATATATAATATACTGTATAATTGTATTATATGGTTAGAACTTATCATTGAACATATCTCTTTTATATCCTGTACATAATTTTGTTTACTTTCTCAGATAATTTATTTTCTGTTAAATTGGTTTTATTACTTCACGATAACACTATGTATGGCGATCTATTCTGTAATCCTTTCAACATATTGTTATCGTGTTAATATTTTATTTTTTTGCTTTCTATGTATTGTTTCTGAGATATTTTGTTACACATGTTTCTTCATGTATTCGATACTTGCAAAAACAAAGAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10029#0 GTTTATGGCATTCTTCAAATCCCTGAAGGATCCTGGATGTGTCGACAGTGTGAGGCGGGT 60 consensus_10029#1 ----AGGCCAANATTCGG----CACGAGGCTTGTTTAAGAGAATGTGGCGTATATCTGAA 52 * * ** *** * *** * * * * * * ** * * consensus_10029#0 GTCAAATCAACCACCCCCTGCAGCTTAT---GTCCGAACACTGGTGGG--GCTATGAAAC 115 consensus_10029#1 ATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACT 112 ** *** * * * * * *** * ** *** ** * * consensus_10029#0 TTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTG 175 consensus_10029#1 GCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTT-TAGCTTATAATAATC- 170 *** ** ** * * ** * * * ** ** * * ** * * * consensus_10029#0 GGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGA--CAATATACCACA-AG 232 consensus_10029#1 --CTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAA 228 ** * * * ** **** * * *** * * * * ** * * consensus_10029#0 CTAGACGAAACCTTT-TGTGTTCAATATGTCGTTCACG-CTATGGTGCTCCTGTACAGTG 290 consensus_10029#1 CGAGTCGAAGTCTTCACCTGTTTATACTGTTAATGAAAACAACTCTAGTTTTTCGCAGAC 288 * ** **** *** **** * *** * * * * * * * *** consensus_10029#0 TTCTAGTGTTAAGTGTAA----GACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACC 346 consensus_10029#1 TTCTA-TGCCTAATGCAACTATAAAAGTAAACGAAAGCATCGATTCATTCAATATTAGTG 347 ***** ** * ** ** * ** * * * ** * *** * * * consensus_10029#0 TCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGG--------TTGTG 398 consensus_10029#1 CTATTCCTAAAGAATGTCTCATTGTTTCCGATACA-ATTAAACAGAGACTTCGTTCTGCG 406 * ** ** * * *** * ** ** * ** * consensus_10029#0 TTGGAAGCATTCCCGAAAAGA-GCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTG 457 consensus_10029#1 TTAACATTAGTCGCGGAAAATTGTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCC 466 ** * * ** ** *** * ** * * * ** * * * * * consensus_10029#0 ATTCAAATTCCTTTCGCTCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACT 517 consensus_10029#1 AATCATAAGCGTAAAACGAAC--AATCATTATATCAAATCACATAAGTCTCTTTCACTTA 524 * *** * * * * * *** * ****** **** * * * * consensus_10029#0 TCGGGAGTGGA-ATGCAACCAGTAG-CCTTAACG--CGTAAACAAAGACTCCTTGAACTG 573 consensus_10029#1 ATCGATTTGAACGTTCACCCCTCAGATCTCATTGTTCTTCACCATTAACTTCATCAACTA 584 * ** * * ** ** ** ** * * * * * ** *** * * **** consensus_10029#0 GAGTGTAATTTTCATAATTTGGTGCAAGAGTCCCACTTGAATATCTGGTTGGATAATGAC 633 consensus_10029#1 AAATAAATAAGCCATCA------GAAAATGATATGCCTATTGTTCAAGTGAAATTATCGC 638 * * * *** * * ** * * * ** ** ** ** * consensus_10029#0 TCCATGAAAATGCACTTGGGAAATTCAGCTTTTCTAAATGAAGGTGAACA-TAGACACGT 692 consensus_10029#1 CAATTTCAGATAAA---GCATCATTTAATTATGTTAAA--AATGTAAATAGTAGTAATAA 693 * * ** * * *** * * * **** ** ** ** * *** * consensus_10029#0 TCCT-AATG---ACTTTCGTGCAGCCATTTTCGTTTACTGGCGTTTAAAAAGGCGGGCAA 748 consensus_10029#1 TAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGA 753 * * **** ** * * * * * * * ** * *** * * * consensus_10029#0 ACTTTAACCAACCACTAGTCAATCCAGCTCCATTA--ACTTGGAAAGAAAGTGCTGATCA 806 consensus_10029#1 AC---AATCACCACCTAGTCATTCTATTCCTGTTCTTACTAAATTAGCAATGATTACTTT 810 ** ** ** * ******* ** * * ** *** ** ** * * consensus_10029#0 AGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAA 866 consensus_10029#1 ATCACCTGGAGCTGCTAAATTTCTATGAGCCTTTCTTTCACACAAGATTTTAGCTATATA 870 * * *** * * ** * **** * ** * * ** * *** * consensus_10029#0 AGCATTTGAGTCATTCAAACGTATTAGATTCGGT-----CTTGACAGGGCTAGA--TTAA 919 consensus_10029#1 ATTTCTCTGATCTTGTATATATAATATACTGTATAATTGTATTATATGGTTAGAACTTAT 930 * * ** * * * ** ** * * * * * * ** **** *** consensus_10029#0 TGGCAGATATGGTCTTGCAAAGAGAACGACGGAAATTAGCTCTGTTTAAGAGAATGTGGC 979 consensus_10029#1 CATTGAACATATCTCTTTTATATCCTGTACATAATTTTGTTTACTTTCTCAGATAATTTA 990 * ** * * ** ** ** * * *** *** * consensus_10029#0 GTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAAT 1039 consensus_10029#1 TTTTCTGTTAAATTGGTTTTATTACTT--------CACGATAACACTATGTATGGCGATC 1042 * * * * **** ** * ** ** * * ** * * * ** consensus_10029#0 TACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTT 1099 consensus_10029#1 TATTCTGTAATCCTTTCAACAT--ATTGTTATCGTGTTAATATTTTATT-TTTTTGCTTT 1099 ** ** * * * ** * * * * * * ** **** *** ***** ** consensus_10029#0 ATA-ATAATCCTTC-GCGTCAGCGTGTTGATCAGGGTAAAA-ATATGTCCCACATTAGTG 1156 consensus_10029#1 CTATGTATTGTTTCTGAGATATTTTGTTACACATGTTTCTTCATGTATTCGATACTTGCA 1159 ** ** * *** * * * **** ** * * ** * * * * * * * consensus_10029#0 AATCAAATAACGAGTCGAAGTCTCACCTGTTTATACTGTTAATGAAA 1203 consensus_10029#1 A---AAACAAAGAGTT------------------------------- 1172 * *** ** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||