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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1203 fasta sequence
[GTTTATGGCATTCTTCAAATCCCTGAAGGATCCTG-G-ATGTGTCGACAGTGTGAG-GCGGGTGTCAAATCAACCACCCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC-CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATTCAAATTCCTTTCGCTCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTCCCACTTGAATATCTGGTTGGATAATGACTCCATGAAAATGCACTTGGGAAATTCAGCTTTTCTAAATGAAGGTGAACATAGACACGTTCCTAATGACTTTCGTGCAGCCATTTTCGTTTACTGGCGTTTAAAAAGGCGGGCAAACTTTAACCAACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCTGATCAAGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAAAGCATTTGAGTCATTCAAACGTATTAGATTCGGTCTTGACAGGGCTAGATTAATGGCAGATATGGTCTTGCAAAGAG-AACGACGGAAATTAGCTCTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTCACCTGTTTATACTGTTAATGAAA]
[+] EMBL CD140850 [GTTATTGGCATTCTTCATATCCCTGATGGATCCTGAGTATGTGTCGACAGTGTGAGTGCGGGTGTCAAATCAACCACCCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGG TCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATT ]
[+] EMBL CD140845 [ TATGGCATTCTTCAAATCCCTGAAGGATCCTG G ATGTGTCGACAGTGTGAG GCGGGTGTCAAATCAACCACTCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTG ]
[+] EMBL CD140779 [ TATGGCATTCTTCAAATCCCTGAAGGATCCTG G ATGTGTCGACAGTGTGAG GCGGGTGTCAAATCAACCACCCCCTGCAGCTTATGTCCGAACACTGGTGGGGCTATGAAACTTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATTCAAATTCCTTTCGCTC ]
[+] EMBL CD180907 [ CGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTGGGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGACAATATACCACAAGCTAGACGAAACCTTTTGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGTTGTGATTCAAATTCCTTTCGCGCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTCCC ]
[-] EMBL CD140805 [ CCATTATAAAACTAGACAATATACCACAAGTTAGACGAAACCTTTAGTGTTCAATATGTCGTTCACGCTATGGTGCTCCTGTACAGTGTTCTAGTGTTAAGTGTAAGACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACCTCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGGTTGTGTTGGAAGCATTCC CGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTGATTCAAATTCCTTTCGCTCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTCCCACTTGAATATCT ]
[+] EMBL CD091754 [ CATTCCNCGAAAAGAGCAACAGTCAGCAACTCACCATTCTTCTGCTAGTTGTGATTCAAATTCCTTTCGCGCTCTGATTTCTCCTATCAAGGTACATGATGCAAATCAAAACTTCGGGAGTGGAATGCAACCAGTAGCCTTAACGCGTAAACAAAGACTCCTTGAACTGGAGTGTAATTCTCATAATTTGGTGCAAGAGTCCCACTTGAATATCTGGTTGGATAATGACTCCATGAAAATGCACTTGGGAAATTCAGCTTTTCTAAATGAAGGTGAACATAGACACGTTCCTAATGACTTTCGTGCAGC ]
[+] EMBL CD067127 [ TGGAATGCAACCAGTAGCCTTAACGCGTTAACAAAGACTCCTTGAACTGGAGTGTAATTTTCATAATTTGGTGCAAGAGTTCCACTTGAATATCTGGTTGGATAATGACTCCATGAAAATGCACTTGGGAAATTCACCTTTTCTAAATGAATGTGAACATATACACGTTCCTAATGACATTCGGGCGGCCATTTTCGTTTACTGGCGTTTAAAAAGGCGGGCAAACTTTAACCAACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCCGATCAAGTAGCTGCCACGACCAA ]
[+] EMBL AI975056 [ AAGGCGGGCAAACTTTAACCAACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCTGATCAAGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAAAGCATTTGAGTCATTCAAACGTATTAGATTCGGTCTTGACAGGGCTAGATTAATGGCAGATATGGTCTTGCAAAGAG AACGACGGAAATTAGCTCTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTCACCTGTTTATACTGTTAATGAAA]
[+] EMBL CD077925 [ gaggcacACCACTAGTCAATCCAGCTCCATTAACTTGGAAAGAAAGTGCTGATCAAGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAAAGCATTTGAGTCATTCAAACGTATTAGATTCGGTCTTGACAGGGCTAGATTAATGGCAGATATGGTCTTGCAAAGAGAAACGACGG AATTAGCTNTGTTTAAGAGAATGTGGCGTATATCTGAAATC ]
consensusID : consensus_10029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1172 fasta sequence
[AGGCCAANATTCGGCACGAGGCTTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTTCACCTGTTTATACTGTTAATGAAAACAACTCTAGTTTTTCGCAGACTTCTATGCCTAATGCAACTATAAAAGTAAACGAAAGCATCGATTCATTCAATATTAGTGCTATTCCTAAAGAATGTCTCATTGTTTCCGATACAATTAAACAGAGACTTCGTTCTGCGTTAACATTAGTCGCGGAAAATTGTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCCAATCATAAGCGTAAAACGAACAATCATTATATCAAATCACATAAGTCTCTTTCACTTAATCGATTTGAACGTTCACCCCTC-AGATCTCATTGTTCTTCACCATTAACTTCATCAACTAAAATAAATAAGCCATCAGAAAATGATATGCCTATTGTTCAAGTGAAATTATCGCCAATTTCAGATAAAGCATCATTTAATTATGTTAAAAATGTAAATAGTAGTAATAATAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAGTCATTCTATTCCTGTTCTTACTAAATTAGCAATGATTACTTTATCACCTGGAGCTGCTAAATTTCTATGAGCCTTTCTTTCACACAAGATTTTAGCTATATAATTTCTCTGATCTTGTATATATAATATACTGTATAATTGTATTATATGGTTAGAACTTATCATTGAACATATCTCTTTTATATCCTGTACATAATTTTGTTTACTTTCTCAGATAATTTATTTTCTGTTAAATTGGTTTTATTACTTCACGATAACACTATGTATGGCGATCTATTCTGTAATCCTTTCAACATATTGTTATCGTGTTAATATTTTATTTTTTTGCTTTCTATGTATTGTTTCTGAGATATTTTGTTACACATGTTTCTTCATGTATTCGATACTTGCAAAAACAAAGAGTT]
[+] EMBL CD083223 [AGGCCAANATTCGGCACGAGGCTTGTTTAAGAGAATGTGGCGTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTTATAATAATCCTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAACGAGTCGAAGTCTTCACCTGTTTATACTGTTAATGAAAACAACTCTAGTTTTTCGCAGACTTCTATGCCTAATGCAACTATAAAAGTAAACGAAAGCATCGATTCATTCAATATTAGTGCTATTCCTAAAGAATGTCTCATTGTTTCCGATACAATTAAACAGAGACTTCGTTCTGCGTTAACATTAGTCGCGGAAAATTGTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCCAATCATAAGCGTAAAACGAACAATCATTATATCAAATCACATAAGTCTCTTTCACTTAATCGATTTGAACGTTCACCCCTC AGATCTCATTGTTCTTCACCATnnt ]
[-] EMBL CD067234 [ GTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCCAATCATAAGCGTAAAACGAACAATCATCATATCAAATCACATAAGTCTCTTTCACTTAATCGATTTGAGCGTTCA CCCTCAAGATCTCATTGTTCTTCACCATTAACTTCATCAACTAAAATAAATAAGCCATCAGAAAATGATATGCCTATTGTTCAAGTGAAATTATCGCCAATTTCAGATAAAGCATCATTTAATTATGTTAAAAATGTAAATAGTAGTAATAATAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAG ]
[-] EMBL CD066306 [ ATCTCATTGTTCTTCACCATTAACTTCATCAACTAAAATAAATAAGCCATCAGAAAATGATATGCCTATTGTTCAAGTGAAATTATCGCCAATTTCAGATAAAGCATCATTTAATTATGTTAAAAATGTAAATAGTAGTAATAATAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAGTCA ]
[-] EMBL CD076794 [ AAACACTTGAATAGTTCTAACTCAGTATTCGAACAATCACCACCTAGTCATTCTATTCCTGTTCTTACTAAATTAGCAATGATTACTTTATCACCTGGAGCTGCTAAATTTCTATGAGCCTTTCTTTCACACAAGATTTTAGCTATATAATTTCTCTGATCTTGTATATATAATATACTGTATAATTGTATTATATGGTTAGAACTTATCATTGAACATATCTCTTTTATATCCTGTACATAATTTTGTTTACTTTCTCAGATAATTTATTTTCTGTTAAATTGGTTTTATTACTTCACGATAACACTATGTATGGCGATCTATTCTGTAATCCTTTCAACATATTGTTATCGTGTTAATATTTTATTTTTTTGCTTTCTATGTATTGTTTCTGAGATATTTTGTTACACATGTTTCTTCATGTATTCGATACTTGCAAAAACAAAGAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10029#0 GTTTATGGCATTCTTCAAATCCCTGAAGGATCCTGGATGTGTCGACAGTGTGAGGCGGGT 60
consensus_10029#1 ----AGGCCAANATTCGG----CACGAGGCTTGTTTAAGAGAATGTGGCGTATATCTGAA 52
* * ** *** * *** * * * * * * ** * *
consensus_10029#0 GTCAAATCAACCACCCCCTGCAGCTTAT---GTCCGAACACTGGTGGG--GCTATGAAAC 115
consensus_10029#1 ATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAATTACTCCGGACT 112
** *** * * * * * *** * ** *** ** * *
consensus_10029#0 TTTCAGATGACGGACAACGCTGGTGCCATGTAAGCTGTGCCTTGTGGGTTCCAGAAGTTG 175
consensus_10029#1 GCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTT-TAGCTTATAATAATC- 170
*** ** ** * * ** * * * ** ** * * ** * * *
consensus_10029#0 GGTTTGGTGACGTCGAAATGATGGAGCCCATTATAAAACTAGA--CAATATACCACA-AG 232
consensus_10029#1 --CTTCGCGTCAGCGTGTTGATCAGGGTAAAAATATGTCCCACATTAGTGAATCAAATAA 228
** * * * ** **** * * *** * * * * ** * *
consensus_10029#0 CTAGACGAAACCTTT-TGTGTTCAATATGTCGTTCACG-CTATGGTGCTCCTGTACAGTG 290
consensus_10029#1 CGAGTCGAAGTCTTCACCTGTTTATACTGTTAATGAAAACAACTCTAGTTTTTCGCAGAC 288
* ** **** *** **** * *** * * * * * * * ***
consensus_10029#0 TTCTAGTGTTAAGTGTAA----GACAGCATTCCATGTCACATGCGCGTTCCAAAGCAACC 346
consensus_10029#1 TTCTA-TGCCTAATGCAACTATAAAAGTAAACGAAAGCATCGATTCATTCAATATTAGTG 347
***** ** * ** ** * ** * * * ** * *** * * *
consensus_10029#0 TCGTCATGCGCCAAGAGCTTGTCGACAAGGATGTGCGCTTAATAGGG--------TTGTG 398
consensus_10029#1 CTATTCCTAAAGAATGTCTCATTGTTTCCGATACA-ATTAAACAGAGACTTCGTTCTGCG 406
* ** ** * * *** * ** ** * ** *
consensus_10029#0 TTGGAAGCATTCCCGAAAAGA-GCAACAGTCAGCAACTCACCATTCTTCTGCTAGCTGTG 457
consensus_10029#1 TTAACATTAGTCGCGGAAAATTGTAATATGTGGAGAGCAGACAAACATGTAGAAAGTCCC 466
** * * ** ** *** * ** * * * ** * * * * *
consensus_10029#0 ATTCAAATTCCTTTCGCTCTCCGAATTCTCCTATCAAGGTACATGATGCAAATCAAAACT 517
consensus_10029#1 AATCATAAGCGTAAAACGAAC--AATCATTATATCAAATCACATAAGTCTCTTTCACTTA 524
* *** * * * * * *** * ****** **** * * * *
consensus_10029#0 TCGGGAGTGGA-ATGCAACCAGTAG-CCTTAACG--CGTAAACAAAGACTCCTTGAACTG 573
consensus_10029#1 ATCGATTTGAACGTTCACCCCTCAGATCTCATTGTTCTTCACCATTAACTTCATCAACTA 584
* ** * * ** ** ** ** * * * * * ** *** * * ****
consensus_10029#0 GAGTGTAATTTTCATAATTTGGTGCAAGAGTCCCACTTGAATATCTGGTTGGATAATGAC 633
consensus_10029#1 AAATAAATAAGCCATCA------GAAAATGATATGCCTATTGTTCAAGTGAAATTATCGC 638
* * * *** * * ** * * * ** ** ** ** *
consensus_10029#0 TCCATGAAAATGCACTTGGGAAATTCAGCTTTTCTAAATGAAGGTGAACA-TAGACACGT 692
consensus_10029#1 CAATTTCAGATAAA---GCATCATTTAATTATGTTAAA--AATGTAAATAGTAGTAATAA 693
* * ** * * *** * * * **** ** ** ** * *** *
consensus_10029#0 TCCT-AATG---ACTTTCGTGCAGCCATTTTCGTTTACTGGCGTTTAAAAAGGCGGGCAA 748
consensus_10029#1 TAATGAATGTACACCTACAAGAAAACGTAAACACTTGAATAGTTCTAACTCAGTATTCGA 753
* * **** ** * * * * * * * ** * *** * * *
consensus_10029#0 ACTTTAACCAACCACTAGTCAATCCAGCTCCATTA--ACTTGGAAAGAAAGTGCTGATCA 806
consensus_10029#1 AC---AATCACCACCTAGTCATTCTATTCCTGTTCTTACTAAATTAGCAATGATTACTTT 810
** ** ** * ******* ** * * ** *** ** ** * *
consensus_10029#0 AGTAGCTGCCACGACCAAGGAAGAACTAGCCCGAGTAGAACGCGCTAATTCTGATATGAA 866
consensus_10029#1 ATCACCTGGAGCTGCTAAATTTCTATGAGCCTTTCTTTCACACAAGATTTTAGCTATATA 870
* * *** * * ** * **** * ** * * ** * *** *
consensus_10029#0 AGCATTTGAGTCATTCAAACGTATTAGATTCGGT-----CTTGACAGGGCTAGA--TTAA 919
consensus_10029#1 ATTTCTCTGATCTTGTATATATAATATACTGTATAATTGTATTATATGGTTAGAACTTAT 930
* * ** * * * ** ** * * * * * * ** **** ***
consensus_10029#0 TGGCAGATATGGTCTTGCAAAGAGAACGACGGAAATTAGCTCTGTTTAAGAGAATGTGGC 979
consensus_10029#1 CATTGAACATATCTCTTTTATATCCTGTACATAATTTTGTTTACTTTCTCAGATAATTTA 990
* ** * * ** ** ** * * *** *** *
consensus_10029#0 GTATATCTGAAATCCAATTGTCTGCTCTTGAAAAACAAAACAGTCTAATATCTAGTGAAT 1039
consensus_10029#1 TTTTCTGTTAAATTGGTTTTATTACTT--------CACGATAACACTATGTATGGCGATC 1042
* * * * **** ** * ** ** * * ** * * * **
consensus_10029#0 TACTCCGGACTGCTCATATCGGTGAATCTGTTTATGATAATTGGGAATTGTTTTTAGCTT 1099
consensus_10029#1 TATTCTGTAATCCTTTCAACAT--ATTGTTATCGTGTTAATATTTTATT-TTTTTGCTTT 1099
** ** * * * ** * * * * * * ** **** *** ***** **
consensus_10029#0 ATA-ATAATCCTTC-GCGTCAGCGTGTTGATCAGGGTAAAA-ATATGTCCCACATTAGTG 1156
consensus_10029#1 CTATGTATTGTTTCTGAGATATTTTGTTACACATGTTTCTTCATGTATTCGATACTTGCA 1159
** ** * *** * * * **** ** * * ** * * * * * * *
consensus_10029#0 AATCAAATAACGAGTCGAAGTCTCACCTGTTTATACTGTTAATGAAA 1203
consensus_10029#1 A---AAACAAAGAGTT------------------------------- 1172
* *** ** ****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||