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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1201 fasta sequence
[AAANCGATTATCTTTACTGAAACAGCCATTTAGCTGAGAANCTTCAGTCAGTTNTCTTTTTTATAATTTAAGCAGGAAGACTGANGAAGCCNACCAGGGTAAGGTATANGGNAATAAAATGANAGAANAANTAATTATTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGTAAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTC-ATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAAC-TTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGATTTATCTGATGTTGCTCTGCGAAGACTAATTACTACTGG-TTCAAGTGCCATCAATGTTATAATTAGTAATTAATAATAATAATTACAAGGATATTAACACATTAACAATAATGGTTTCAAGTAAAGAGTCCTTCTACTAGAATATAAAATACTTTAAAGATTTTTGAATTTACAATCTTTT]
[-] EMBL SM774 [AAANCGATTATCTTTACTGAAACAGCCATTTAGCTGAGAANCTTCAGTCAGTTNTCTTTTTTATAATTTAAGCAGGAAGACTGANGAAGCCNACCAGGGTAAGGTATANGGNAATAAAATGANAGAANAANTAATTATTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGTAAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTACGTAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTNATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTAT ]
[-] EMBL SMAA14063 [ TTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGTAAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGT ]
[+] EMBL CD136844 [ ATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTC ]
[+] EMBL CD152919 [ AAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTC ATATTACATCTNCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAAC CTATn ]
[-] EMBL CD144828 [ AAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAGCTACATTGAAATCACGTTTTTTGACCATAAAAT ]
[+] EMBL CD186822 [ TTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTAGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAACTTTCACTTGGGCA ]
[+] EMBL CD184504 [ GTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTGGCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTCAATATTACATCTCCAGGTTC ]
[+] EMBL CD157141 [ ATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCATATTTTCAATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAACTTTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGATTTATCTGATGTTGCTCTGCGAAGACTAATTACTACTGG TTCAAGTGCCATCAATGTTATAATTAGTAATTAATAATAATAATTACAAGGATATTAACACATT ]
[-] EMBL AA559580 [ TTTTCAATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAACTTTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGATTTATCTGATGTTGCTNTGCGNAGACTAATTACTACTGGTTTCAAGTGCCATCAATGTTATAATTAGTAATTAATAATAATAATTACAAGGATATTAACACATTAACAATAATGGTTTCAAGTAAAGAGTCCTTCTACTAGAATATAAAATACTTTAAAGATTTTTGAATTTACAATCTTTT]
consensusID : consensus_10032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 662 fasta sequence
[AGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCAGTCCTCGTGCCGAATCTTGGCTC]
[-] EMBL CD083180 [AGAGACTATTCAATCTATTTAGATAGTAATACATTGGGACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCAGTCCTCGTGCCGAATCTTGGCTC]
[-] EMBL CD182315 [ ACAGAAGGGGAAATGAAGGNAAAAGGCGTGAGTAATATGGTTTATTATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTAATATTTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT ]
[-] EMBL AA804156 [ TAATTTTATATAAATAGAAAGTTTAATATCTAATTACATCAAGCAAATGAATGAACATATTATAACCACGGGTTATTATGGCACTGCAGGTTTAATTGGA ]
consensusID : consensus_10032#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence
[TGGATTGGTTATCATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTAGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAT]
[-] EMBL BG931629 [TGGATTGGTTATCATGGCACTGCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACTTATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGTTCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACATTTTTAAATGTTGGACCACCATGTAGCCATAAATGTTCTTCAACTATTTCAGCACGTGGTTCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTTTGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCAGCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10032#0 AAANCGATTATCTTTACTGAAACAGCCATTTAGCTGAGAANCTTCAGTCAGTTNTCTTTT 60
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 TTATAATTTAAGCAGGAAGACTGANGAAGCCNACCAGGGTAAGGTATANGGNAATAAAAT 120
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 GANAGAANAANTAATTATTTGTATTTCCTTTTTAAGGGTATGCATCTCTATCTGTTTTGT 180
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 AAAGATGCTAATCCTTCATAATAGAGACTATTCAATCTATTTAGATAGTAATACATTGGG 240
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ----------------------AGAGACTATTCAATCTATTTAGATAGTAATACATTGGG 38
consensus_10032#0 ACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATT 300
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ACACAGAAAGGTAAACAGAAGGGGAAATGAAGGGAAAAGGCGTGAGTAATATGGTTTATT 98
consensus_10032#0 ATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTA 360
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ATATGATGTAATGCCATCAGTAACAGTGTTAGCAATAATTTTATATAAATAGAAAGTTTA 158
consensus_10032#0 ATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACT 420
consensus_10032#2 ---------------------------------------TGGATTGGTTATCATGGCACT 21
consensus_10032#1 ATATCTAATTACATCAAGCAAATGAATGAACATATTATAACGACGGGTTATTATGGCACT 218
** ****** ********
consensus_10032#0 GCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACT 480
consensus_10032#2 GCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACT 81
consensus_10032#1 GCATGTTTAATTGGAACAGTAAGAAAAGAAAATGTGTATATAGCTGTTAATATGTAGACT 278
************************************************************
consensus_10032#0 TATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT 540
consensus_10032#2 TATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT 141
consensus_10032#1 TATGACTCGCCATAAGCTTTTTGAATAGTTTGCTCAGTAGCTTGTAAATATGGTGATCGT 338
************************************************************
consensus_10032#0 TCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCTGTCATCTCGTAATTGTTG 600
consensus_10032#2 TCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCT------------------ 183
consensus_10032#1 TCATCCATACTACGGTCGAATACAGAACCCGGTGCAGGACCT------------------ 380
******************************************
consensus_10032#0 GCTCCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACA 660
consensus_10032#2 ---CCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACA 240
consensus_10032#1 ---CCCATACTTGATTGTGGTAATTGTTGTTCAAGGATTTTATATGATTTTGGTTGAACA 437
*********************************************************
consensus_10032#0 TTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGT 720
consensus_10032#2 TTTTTAAATGTTGGACCACCATGTAGCCATAAATGTTCTTCAACTATTTCAGCACGTGGT 300
consensus_10032#1 TTTTTAAATGTTGGACCACCATGTCGCCATAAATGTTCTTCAACTATTTCAGCACGTGGT 497
************************ ***********************************
consensus_10032#0 TCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTT 780
consensus_10032#2 TCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTT 360
consensus_10032#1 TCAGGTGAATTTGAATTGACATCAATTGGTCGATTACTAGCAGCAATTTGTTGCATTGTT 557
************************************************************
consensus_10032#0 TGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCA 840
consensus_10032#2 TGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCA 420
consensus_10032#1 TGATTATATGCAACTACATTGAAATCACGTTTTTTGACCATAAAATCCAAATCATTACCA 617
************************************************************
consensus_10032#0 GCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAGTTGCGCAT 900
consensus_10032#2 GCTCTTAGAATTTCAGCTTTCACTTGGGCATGTACCATCCCAGTGATTGGAT-------- 472
consensus_10032#1 GCTCTTAGAATTTCAGCTTTCAGTCCT-CGTGCCGAATCTTGGCTC-------------- 662
********************** * * ** *** *
consensus_10032#0 ATTTTCATATTACATCTCCAGGTTCAAGTCCAGACTTATGAGCTATCCCATTACGTGTAA 960
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 CTTATGAACAAATACTGGCAAGCCTTGATCAACTCCACCTTGTAATACAAATCCCCAGGA 1020
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 TTTATCTGATGTTGCTCTGCGAAGACTAATTACTACTGGTTCAAGTGCCATCAATGTTAT 1080
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 AATTAGTAATTAATAATAATAATTACAAGGATATTAACACATTAACAATAATGGTTTCAA 1140
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 GTAAAGAGTCCTTCTACTAGAATATAAAATACTTTAAAGATTTTTGAATTTACAATCTTT 1200
consensus_10032#2 ------------------------------------------------------------
consensus_10032#1 ------------------------------------------------------------
consensus_10032#0 T 1201
consensus_10032#2 -
consensus_10032#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||