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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1038 fasta sequence
[TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAGAAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCATCGAATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAAGCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGTAAAACCACCATCACTTACAAACAGACGAAGACGAATAAATATGATATAGGCACAAAAAAATATATACTAAAACATATAACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGGTGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCGCTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATGGTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATGAAGCATAGTTTAAGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTGAGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCTACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTCGTGAAGGCGCTGGCAAGATGCAGTTTTATGAATACTTTGTACGACGCTTCAGGATTGTGGTTATCCATTTCCTAATAGTTGTAAGTAATCTACCAGAAGCTGTTTTGAACTTGATGGAACTGATTGTTTGTATCAATTAAGTGTCAGATTCTTAAAATTAATAACCAGGCATTTCGTTGAACAATACTAGTTACATACAGTGCTACCACCGACAGCTTCGTTACAATCGGCTTTATGCCAAAATATTCTTGNTTTGAAGTTATGGATCACTATTTAGTG]
[+] EMBL CD118635 [TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAGAAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCATCGAATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAAGCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGTAAAACCACCATCACTTACAAACAGACGAAGACGAATAAATATGATATAGGCACAAAAAAATATATACTAAAACATATAACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGGTGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCGCTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAAGT ]
[+] EMBL CD118682 [TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAGAAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCATCGAATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAAGCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGT AAACCACCATCACTTACAAACAGACGAAGACGAATAAATATGATATAGGCACAAAAAAATATATACTAAAACATATAACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGGTGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCGCTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAAGT ]
[+] EMBL CD078308 [ AGTCAGTCAGCTACAACATAGGAACAGGCACACATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATGGTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATGAAGCATAGTTTAAGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTGAGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCTACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTCGTGAAGGCGCTGGCAAGATGCAGTTTTATGAATACTTTGTACGACGCTTCAGGATTGTGGTTATCCATTTCCTAATAGTTGTAAGTAATCTACCAGAAGCTGTTTTGAACTTGATGGAACTGATTGTTTGTATCAATTAAGTGTCAGATTCTTAAAATTAATAACCAGGCATTTCGTTGAACAATACTAGTTACATACAGTGCTACCACCGACAGCTTCGTTACAATCGGCTTTATGCCAAAATATTCTTGNTTTGAAGTTATGGATCACTATTTAGTG]
[+] EMBL CD078396 [ AGTCAGTCAGCTACAACATAGGAACAGGCACACATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATGGTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATGAAGCATAGTTTAAGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTGAGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCTACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTC ]
consensusID : consensus_10033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 864 fasta sequence
[CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG-AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG-TACCTTTGT-GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGTGTTAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTA]
[+] EMBL CD124291 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGCGTTAGTTTCAGTCCANATGGTGATTATTTATGTACTG ]
[+] EMBL CD124200 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAATTTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGTGTTAGTTTCAGTCCCAATGGTGATTAT ]
[+] EMBL CD124323 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCACTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCCGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTGCATCTGGTGGACAAGATCATATTGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGGTG ]
[+] EMBL CD124282 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAGATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGGGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATTTTGATAGTACTGGTAAATTTCTTG ]
[+] EMBL CD124330 [CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAAAAAGAGAATGAGGAGATTGAAGCGTAAACGAAGG AAAATGAGGGAAAGGAGCAAGTGAAGTAATCGTTGTGAAGCTCTTG TACCTTTGT GGGAAATCAAATAAATTCTTTCCACAATGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTAGCTAGACAACTACGATTTGATTATGACGTCTGTAGGAAAGTCACATCCTGTCATTTGTTCTGTAGGCTAGTGAACCGAACGACGTTGAATTTGTGGATGGAGATGTCGATTGGATTGAAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTGAAGTGGTGGACAATGATATGGATGTTGTACAGTATTTTACACCTACTCAAGATGATACATTCAAATTACTCTCAGGCCATAAAGAAAGCGTCTTCTGTTTAGATCTTGATA ]
[+] EMBL AA559353 [ GAATGAGGAGATTGAAGCGTAAACGAAGGNAAAATGAGGGAAAGGAGCAANTGAAGTAATCGTTGTGAAGCTCTTGNTACCTTTGTGGGGAAATCAAATAAATNCT ]
[+] EMBL CD147744 [ TGCTATAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTGTGAATTGTGTTAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTA]
consensusID : consensus_10033#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 349 fasta sequence
[CCTTGGACTAAGATCTACGTCCATCGCGGTGGCTGTCGATCTAGAACTTCTGGATCCGCCCGGGGAGTACGAATATCGAATGGATGGGGAGTCTCTTAACCATTACTTCGGATCCGAAAACCAACAAAATAGAACCGAAGTCCTATTTCATTATGCCATGCAAGAATTTTCAGGCACATAAGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAAGATGCCGTCCGCTCCCGACACCCGTTTAAAGGCATCCGGAAGCATGCCGACAGGTCAACAAGACGAACTCGTCAACCCACCAGCACCCGTTTAACACAGACACAGCTCCACCATGCGGGCTGGATCCAGCCCG]
[+] EMBL BG932125 [CCTTGGACTAAGATCTACGTCCATCGCGGTGGCTGTCGATCTAGAACTTCTGGATCCGCCCGGGGAGTACGAATATCGAATGGATGGGGAGTCTCTTAACCATTACTTCGGATCCGAAAACCAACAAAATAGAACCGAAGTCCTATTTCATTATGCCATGCAAGAATTTTCAGGCACATAAGCCTGCTTTGAGCACTCAAATTTGTTCAAAGTAAAGATGCCGTCCGCTCCCGACACCCGTTTAAAGGCATCCGGAAGCATGCCGACAGGTCAACAAGACGAACTCGTCAACCCACCAGCACCCGTTTAACACAGACACA ]
[-] EMBL CD072623 [ GCCGACAGGTCAACAAGACGAACTCGTCAACNCACCAGCACCCGCTTAACACAGACACGGCTCCACCATGCGGGCTGGATCCAGCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10033#0 TTACAAAGCTGTATACCTTAAAGATCTATGATTTTGAAGGAAGCACAAAAATATATTAAG 60
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 ---CAAGGTAATCTTGCTCTAAGTCATTGTTCGTGGCGTGATGCGTGATAAGTGGCGTAA 57
consensus_10033#0 AAAAAGTTTAATTACAAAAATGGAATATATGTAGATGTATACTTCAGTAGAAGGCAT-CG 119
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 AAAGAG---AATGAGGAGATTGAAGCGTAAACGAAGGAAAATGAGGGAAAGGAGCAAGTG 114
consensus_10033#0 AATTAAAATCAGTAAGAAACAGACTCCTACGATAGCAAATGAAGTGAATGAAGAGAGAAA 179
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 AAGTAATCGTTGTGAAGCTCTTGTACCTTTG-TGGGAAATCAAATAAATTCTTTCCACAA 173
consensus_10033#0 GCGGAACATTTTTATAAAATTAATTTTTCATTCAAAAAGTAAAACCACCATCACTTACAA 239
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 TGATGTGTTCTTTTTATTTTAATGTGGGCATTAATCATGTCATTGGATGAGTGTTTATTA 233
consensus_10033#0 AC-AGACGAAGACGAATAAAT-ATGATATAGGCACAAAAAAATATATACTAAAACATATA 297
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 GCTAGACAACTACGATTTGATTATGACGTCTGTA-GGAAAGTCACATCCTGTCATTTGTT 292
consensus_10033#0 ACGTTAAGCATTAATCTGACCAATATTAAGTAATCTTTAAAATTAATTTAGATTAGTAGG 357
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 CTGTAGGCTAGTGAACCGAACGACGTTGAAT--TTGTGGATGGAGATGTCGATTGGATTG 350
consensus_10033#0 TGCCAAAGGCTAACTGATTATACATAATGATTTCTTCATAGGATAAAATTAGGTGTATCG 417
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 ------AAGATGAGAATCAATCTGTAAACAACTCGGATGACGATTCGACCAACGAAGTTG 404
consensus_10033#0 CTCAAATAGACAGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCGGTCCAA 477
consensus_10033#2 ---------------------------CCTTGGACTAAG-----ATCTACGTCCATCGCG 28
consensus_10033#1 AAGTGGTGGACAATGATATGGATGTTGTACAGTAT----------TTTACACCTACTCAA 454
* * * * * *
consensus_10033#0 GTTGCCATACCTCATTAGCACAACAAGATAAACACCGAATTCATAGTAGTTCATTTAATG 537
consensus_10033#2 GTGGCTGTCGATC--TAGAACTTCTGGATCCGCCCGGGGAGTACGAATATCGAATGGATG 86
consensus_10033#1 GATG--ATACATTCAAATTACTCTCAGGC---CATAAAGAAAGCGTCTTCTGTTTAGATT 509
* * * * * ** * * * **
consensus_10033#0 GTGGCAATATGTAAGAAAATGGTTTTATCTAAGGATATATAGTACAGGAAGAAAAACATG 597
consensus_10033#2 --GGGAGTCTCTTAACCATTACTTC-------GGATCCGAAAACCAACAAAATAGAACCG 137
consensus_10033#1 TTGATAGTAC--TGGTAAATTTCTT-------GCATCTGGTGGACAAGATCATATTGCTA 560
* * * * * * * ** ** * * *
consensus_10033#0 AAGCATAGTTTA-AGGGAAGACTGAAAGTGTATACCCCTACGCCATTGTGGTCGATTTTG 656
consensus_10033#2 AAGTCCTATTTC-ATTATGCCATGCAAGAATTTTCAGGCACATAA-----GCCTGCTTTG 191
consensus_10033#1 TAATATGGAATGTAGCAACTGGTGAAATTGAATTCATTTGTCAAGGTCATGATGATTCTG 620
* * * ** ** * * * * **
consensus_10033#0 AGCCATTTCACACAGTCTCAAACCAAGTCAGGGCCATCTATTATCCTTATTTATTGATCT 716
consensus_10033#2 AGCA--CTCAAATTTGTTCAAAGTAAA--GATGCCGTCCGCTCCCGACACCCGTTTAAAG 247
consensus_10033#1 TGAA--TTGTGTTAGTTTCAGTCCAAATGGTGATTATTTATGTAC--TGGTGATATGGCT 676
* * *** ** * * *
consensus_10033#0 ACAAGCTAAAGACTTTCGTCGCCAACTGTCAGGTTTAAACTTCGTGAAGGCGCTGGCAAG 776
consensus_10033#2 GCATCCGGAAGCATGCCGACA--GGTCAACAAGACGAA--CTCGTCAACCCACCAGCA-- 301
consensus_10033#1 GGAAATATTCGTATATGGTTAA-GACCATTAA-TAGAAGAAAATTCAAAAGAATGGAAAT 734
* * * * * ** * ** * *
consensus_10033#0 ATGCAGTTTTATGAATACTTTGTACGACGCTTCAGGATTGTGGTTATCCATTTCCT--AA 834
consensus_10033#2 --CCCGTTTAACACAGACACAGCTCCACCATGCGGGCTGGATCCAGCCCG---------- 349
consensus_10033#1 TATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAA 794
* * * * *
consensus_10033#0 TAGTTGTAAGTAATCTACCAGAAGCTGTTTTGAACTTGATGGAACTGATTGTTTGTATCA 894
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 ATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATG 854
consensus_10033#0 ATTAAGTGTCAGATTCTTAAAATTAATAACCAGGCATTTCGTTGAACAATACTAGTTACA 954
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 AACATAGTTA-------------------------------------------------- 864
consensus_10033#0 TACAGTGCTACCACCGACAGCTTCGTTACAATCGGCTTTATGCCAAAATATTCTTGNTTT 1014
consensus_10033#2 ------------------------------------------------------------
consensus_10033#1 ------------------------------------------------------------
consensus_10033#0 GAAGTTATGGATCACTATTTAGTG 1038
consensus_10033#2 ------------------------
consensus_10033#1 ------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||