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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1137 fasta sequence
[TTGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA-TTTTATTCCTCTTC-GTAAACTA-TGTAATGAACGTA-GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT-ACTATCTCT-AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTT-A-AACAAAAAAAAACTGTAC-GTTGTCTTTATTCACTTTCTTTTC-ACCGACTNTTATA-TGTA--TTTTTTGC-A-GGAACTAGACCAA--TATCGCA-TCATTGTA-TTATGT-CATATTAGAAAAAAATTATTTAAATGAGATAATCTTTTGCTATCATTTCTTTCTCGTAGTTCTAAATAAGTGGCTTACTTTTGAGATAGCTTAGTAGTTAAAGCATTG]
[+] EMBL AI068231 [TTGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTA ]
[+] EMBL AI067432 [ TGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAG ]
[+] EMBL AI067656 [ TGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTATCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGCATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCCTGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCACAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAc ]
[+] EMBL CD080689 [ aggTGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTNTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTNTAAACATATTATTAACTACTCAGATNTAATTG NTTTATATTGCTCACTAGAACAGNT A ANNACAAAAAAACTGTAC GTTGTCTTTATTCACTTTCTTTTC ACCGACTNNTATA TGNA TTTTTTGC A GGAACTAGACCAA TATCGCA TCATTGNA TTATGT CATATTAGAAAA ]
[+] EMBL CD080690 [ acccAATCGACGTACAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAATATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATATATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTTGCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTA ]
[+] EMBL CD181681 [ TGAAGAACTGGCTAGTCGATTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGgaag ]
[-] EMBL CD074614 [ TTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGA TTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACT ]
[-] EMBL CD162289 [ AGAGTGTTATTCCTCTTCGGTAAACAATTGTAATTAATGTAGGATTTAAATGTAAAAGGTTAGCGTAACAAAAATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACTTAATGTGATCATGAATTCAGATGTGTCAGGCAGGACATCACAACTTTATCCTTCATT ACTACCTCT AAGTAGTATCAATGACCATTTAGCACCGACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTCGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAATCGACTATACAATTAGTCACAATTTATATTCAGCGCCCATGTGTTGAGATTGAACTCTTTAACAATATTATTAAATACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTT ATAACAAAATAAACCTGTAC GTTGTCTTTATTCAC ]
[-] EMBL CD162278 [ AGATTTTTATTCCTCTTC GTAAACTA TGTAATGAACGTA GATTTTAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACGTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTACCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTTAA AACAAAAAAAAACTGTAC GTTGTCTTTATTCACTTTCTTTTCAACCCACTTTAATA Ttgt ]
[+] EMBL CD091612 [ CGGAACAAATATCATCTGGTCATATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATGAATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATT ACTATCTCT AAGTAGTACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTGTTTTTATATTGCTCACTAGAACAGTTAA AACAAAAAAAAACTGTAC GTTGTCTTTATTCACTTTCTTTTCAACCGACTNTAATATTGTAT TTTTTTGCAA GGAACTAGACCAAATTATCGCATTCATTGTATTTATGTCCATATTAGAAAAAAATTATTTAAATGAGATAATCTTTTGCTATCATTTCTTTCTCGTAGTTCTAAATAAGTGGCTTACTTTTGAGATAGCTTAGTAGTTAAAGCATTG]
[+] EMBL SMAA25590 [ ATCCTTCATTNACTATCTCTAAAGTA TACCAATGACCA TTAGCACCAACTTATGGCTTT AAATAT AACATGTTGATT AATGTATGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTCTT ATCATTTCCTTTTGTCAATCAAATGGCATATTGGATTAAT AACGAC ATACAATTAGTCACAATTTATATTCAGCGGCGATGTGTTGAGATTGAACTCTTTAACAATATTATTAACTACTCAGATTTAATTG TTTTATATTGCTCACTAGAACAGTT A AAC AAAAAAAACTGTACGGTTGTCTTTATTCACTTTCTTTTC ACCGACCTTTATATTGTATTTTTTTTGC AGGGAACTAGACCAAATTATCGCATTCA TGTATTTATGTCCATATTAGAAAAAAA ]
consensusID : consensus_10037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[ATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAAGGGGGTATTGGATTAATAAGCGACTATACAATTAGTCACAATTTATATTCAGCGGTCGATGTGTTGAGAATGAAGTCTTTAACAATATTATTAAGTACTCAGATTTAATTGTTTTTATATTGATCAATAGAACAGTTATAACTAAAAAAACCTGTACGTTGTTTTTATTCACTTATTTTCAAACAACTTTAATATTG]
[-] EMBL CD162292 [ATGTAACCAAATATTAGTTTTAATCATTTCCTTTTGTCAATCAAAGGGGGTATTGGATTAATAAGCGACTATACAATTAGTCACAATTTATATTCAGCGGTCGATGTGTTGAGAATGAAGTCTTTAACAATATTATTAAGTACTCAGATTTAATTGTTTTTATATTGATCAATAGAACAGTTATAACTAAAAAAACCTGTACGTTGTTTTTATTCACTTATTTTCAAACAACTTTAATATTG]
consensusID : consensus_10037#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 104 fasta sequence
[AATTTTTTCTATTTTGGACATAAATACAATCAATGCGATAATTTGGTCTAGTTCCTTGCAAAAAAATACAATATTAAAGTCGGTTGAAAAGAAAGTGAATAAAG]
[+] EMBL CD074613 [AATTTTTTCTATTTTGGACATAAATACAATCAATGCGATAATTTGGTCTAGTTCCTTGCAAAAAAATACAATATTAAAGTCGGTTGAAAAGAAAGTGAATAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10037#0 TTGTGAACTACAATGAATGCAACAAGTTATAACGGAGTGGATGGTAAGGATGAAATTCTA 60
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 TCCTCCTTGGAAAAATTATCTAAAACGGAACTTGAAGCCTTATTATCTGATCATGAAGGC 120
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 ATAAAGAAGCTGGCTAAAAATTGTCCCGATATTAAAAAGATCGAGTCTGACAAAGAAGCC 180
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 TGCATGAATGAGAATCGACGTCAAGCTGAAGCAAATCTATCTATGGAGCCAACTTTTAAT 240
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 ATGATCAAAACGGAGCTTGTGGAAACTTATTCTAATTATAAACAATTAGAAATTGAATAT 300
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 ATGAAACGTAAATCAGAAGTTGACAATATCGGTACAAAATACTCTCCGAGTGTAATTCTT 360
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 GCTTTGTTACAAACTGCCAACGCTCAAGCAGAGGAACAGTCTGAAGAACTGGCTAGTCGA 420
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 TTTCTTGACAAAGCCATGGATGTTGATGCATTTTTGAAAGATTTTATTCCTCTTCGTAAA 480
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 CTATGTAATGAACGTAGATTTAAATGTGAAAAGTTAGCGGAACAAATATCATCTGGTCAT 540
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 ATAAGGGTGTCAAGCTTTACCAATGCTCCTCACTCGTCATATGTACCTAATGTGATGATG 600
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 AATTCAGATGTGTCAGGCAGTACATCACAACTTTATCCTTCATTACTATCTCTAAGTAGT 660
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 ACCAATGACCATTTAGCACCAACTTATGGCTTTAAAATATAAACATGTTGATTAAATGTA 720
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 TGTTTGTTTGTGCTTGCCTTTGTGCATGTAACCAAATATTAGTTTTAATCATTTCCTTTT 780
consensus_10037#1 -------------------------ATGTAACCAAATATTAGTTTTAATCATTTCCTTTT 35
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 GTCAATCAAATGGCATATTGGATTAATAAACGACTATACAATTAGTCACAATTTATATTC 840
consensus_10037#1 GTCAATCAAAGGGGGTATTGGATTAATAAGCGACTATACAATTAGTCACAATTTATATTC 95
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 AGCGG-CGATGTGTTGAGATTGAACTCTTTAACAATATTATTA-ACTACTCAGATTTAAT 898
consensus_10037#1 AGCGGTCGATGTGTTGAGAATGAAGTCTTTAACAATATTATTA-AGTACTCAGATTTAAT 154
consensus_10037#2 --------AATTTTTTCTATTTTGGACATAAATACAATCAATGCGATAATTTGGTCTAGT 52
* * ** * * * * ** * ** * * ** * * * ** *
consensus_10037#0 TGTTTTTATATTGCT-CACTAGAACAGTTA-AACAAAAAAAAACTGTACGTTGTCTTTAT 956
consensus_10037#1 TGTTTTTATATTGAT-CAATAGAACAGTTATAACTAAAAAAACCTGTACGTTGTTTTTAT 213
consensus_10037#2 TCCTTGCAAAAAAATACAATATTAAAGTCG-GTTGAAAAGAAAGTGAATAAAG------- 104
* ** * * * ** ** * *** **** ** ** * *
consensus_10037#0 TCACTTTCTTTTCACCGACTNTTATATGTATTTTTTGCAGGAACTAGACCAATATCGCAT 1016
consensus_10037#1 TCACTTATTTTCAAACAACTTTAATATTG------------------------------- 242
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 CATTGTATTATGTCATATTAGAAAAAAATTATTTAAATGAGATAATCTTTTGCTATCATT 1076
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 TCTTTCTCGTAGTTCTAAATAAGTGGCTTACTTTTGAGATAGCTTAGTAGTTAAAGCATT 1136
consensus_10037#1 ------------------------------------------------------------
consensus_10037#2 ------------------------------------------------------------
consensus_10037#0 G 1137
consensus_10037#1 -
consensus_10037#2 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||