cluster # 10041

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Schistosoma mansoni
cluster # 10041 cluster # 10041 Sequences # 13 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10041#0 length = 1028 sequences # 5
consensus_10041#1 length = 526 sequences # 2
consensus_10041#2 length = 463 sequences # 3

consensus_10041#3 length = 458 sequences # 1
consensus_10041#4 length = 331 sequences # 1
consensus_10041#5 length = 329 sequences # 1

consensusID : consensus_10041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1028
fasta sequence

                              [CCCCCCTTCCTCTTTCTTCCGATGATTGACTGGATTATGAAGACTTCGACATCTGAGGGGGAAGCACAGAATATAATAAACATTTTAGAACCAATTAGACGATTCGGACTTCGCAGATCACCCAGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGTGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATGGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATCGAACTCAAAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGAAATTCAGATTACTACTACAACCATCATCACAAAAGTACAAATATTTATAAACAGTTGTCTACGCAAGACATTCAATGTCCGTTCACTGGATACCATCAGCAACAGCTTACTATGGGAGAAAACAAACCAGCTTCTATCTGAAGAGGAAATTAGGAAAAGACGCTGGAAGTGGATAGGACATATATTGTGGAAATCACCAAACTGCATCACGAGGCAATCGTTAACTTTGAATCCTGAAGGGGAACATAAAATCGGAATACCAAGGAACACATTGCGCTGAGAATTGGGAGCTGACATGAAAAGGGTGAATGTTGACTGGAAAAAACTGGAAAGGATTGCTTGTGACATGGTTGGATGGAGAATGCTGGTGATCGGCCTATGTTCCTTCAGGAGGGGTGACAGACATAGTTTCAAATCATCGTTATCTCTGTAATCTTGTCATGGAGAAAGCGAAATCTCACCGACCATGGTTCGGTATTGAACAAGAATATGCTCTATTAGATATCGATGGTTATCCATTACAATGGCCTANAAATGGT]

[+] EMBL CD114868             [CCCCCCTTCCTCTTTCTTCCGATGATTGACTGGATTATGAAGACTTCGACATCTGAGGGGGAAGCACAGAATATAATAAACATTTTAGAACCAATTAGACGATTCGGACTTCGCAGATCACCCAGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGTGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATGGCGAAACCCTGGAACAGGTGAAAGTGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATCGAACTCAAAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGAAATTCAGATTACTACTACAACCATCATCACAAAAGTACAAATATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD114959             [                                                                                                                                                        TTCAGGCGAAGACTGTCAGTGTAGCAGAAGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATGGCGAAACCCTGGAACAGGTGAAAATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATCGAACTCAAAACAACTGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGAAATTCAGATTACTACTACAACCATCATCACAAAAGTACAAATATTTATAAACAGTTGTCTACGCAAGACATTCAATGTCCGTTCACTGGATACCATCAGCAACAGCTTACTATGGGAGAAAACAAACCAG                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD089262             [                                                                                                                                                                                                                                GATCCTCAAATACAACACGGAGAACACCAACCCAATCACACTTCATGGCGTAACCCTGGAACAGGTGAAAACGTTCACGTACCTGGTCAGCATCACCGATGACCGTGAAGGATCTGATGCCGATGTAAAGGTAAGGATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATGGAACTCAAAACAACCGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTACAGAGCTGAAATTCAGATTACTACTACAACCATCATCACAAAAGTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD116049             [                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTCTCTCAACCAATATCAAAGTGAGAATCTTCAATACGAATGTCAAGACAGTTCTACTGTACAGAGCTGAAATTCAGATTACTACTACAACCATCATCACAAAAGTACAAATATTTATAAACAGTTGTCTACGCAAGACATTCAATGTCCGTTCACTGGATACCATCAGCAACAGCTTACTATGGGAGAAAACAAACCAGCTTCTATCTGAAGAGGAAATTAGGAAAAGACGCTGGAAGTGGATAGGACATATATTGTGGAAATCACCAAACTGCATCACGAGGCAATCGTTAACTTTGAATCCTGAAGGGGAACATAAAATCGGAATACCAAGGAACACATTGCGCTGAGAATTGGGAGCTGACATGAAAAGGGTGAATGTTGACTGGAAAAAACTGGAAAGGATTGCTTGTGACATGGTTGGATGGAGAATGCTGGTGATCGGCCTATGTTCCTTCAGGAGGGGTGACAGACATAGTTTCAAATCATCGTTATCTCTGTAATCTTGTCATGGAGAAAGCGAAATCTCACCGACCATGGTTCGGTATTGAACAAGAATATGCTCTATTAGATATCGATGGTTATCCATTACAATGGCCTANAAATGGT]
[-] EMBL CD147530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGAATCCTGAAGGGGAACATAAAATCGGAATACCAAGGAACACATTGCGCTGAGAATTGGGAGCTGACATGAAAAGGGTGAATGTTGACTGGAAAAAACTGGAAAGGATTGCTTGTGACATGGTTGGATGGAGAATGCTGGTGATCGGCCTATGTTCCTTCAGGAGGGGTGACAGACATAGTTTCAAATCATCGTTATCTCTGTAATCTTGTCATGGAGAAAGCGAAATCTCACCAACCATGGTTCGGTATTGAACAAGAATATGCTCTATTAGATATCGATGGTTAT                        ]




>consensus_10041#0
CCCCCCTTCCTCTTTCTTCCGATGATTGACTGGATTATGAAGACTTCGACATCTGAGGGG
GAAGCACAGAATATAATAAACATTTTAGAACCAATTAGACGATTCGGACTTCGCAGATCA
CCCAGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGTGTAGCAGA
AGCCACTGCAACAGTAGGCTCCAACATACACAAGGGAAAAGCAAGATCCTCAAATACAAC
ACGGAGAACACCAACCCAATCACACTTCATGGCGAAACCCTGGAACAGGTGAAAATGTTC
ACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAGGCAAGG
ATTGGCAAAGCAAGGACAGCATTCCTACAGTCGAAGAACATATCGAACTCAAAACAACTG
TCTCTCAACCAATATCAAAGTGAGAATCTTCAATGCGAATGTCAAGACAGTTCTACTGTA
CAGAGCTGAAATTCAGATTACTACTACAACCATCATCACAAAAGTACAAATATTTATAAA
CAGTTGTCTACGCAAGACATTCAATGTCCGTTCACTGGATACCATCAGCAACAGCTTACT
ATGGGAGAAAACAAACCAGCTTCTATCTGAAGAGGAAATTAGGAAAAGACGCTGGAAGTG
GATAGGACATATATTGTGGAAATCACCAAACTGCATCACGAGGCAATCGTTAACTTTGAA
TCCTGAAGGGGAACATAAAATCGGAATACCAAGGAACACATTGCGCTGAGAATTGGGAGC
TGACATGAAAAGGGTGAATGTTGACTGGAAAAAACTGGAAAGGATTGCTTGTGACATGGT
TGGATGGAGAATGCTGGTGATCGGCCTATGTTCCTTCAGGAGGGGTGACAGACATAGTTT
CAAATCATCGTTATCTCTGTAATCTTGTCATGGAGAAAGCGAAATCTCACCGACCATGGT
TCGGTATTGAACAAGAATATGCTCTATTAGATATCGATGGTTATCCATTACAATGGCCTA
NAAATGGT

consensusID : consensus_10041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 526
fasta sequence

                              [TGTAAATACTCCGATAGATACACCGTAGTCCTCAATACAACTTTGAGGGTTTTAAAAGCTTTTCGCGAGGAAGCACTCAAGTTCCAAATGGGAGAAAACGCAGACTTTGAGGAGAATTTAACAGTTTGTTGATATAAGCCTGACCTTTTTGTAGAACCGCCTTTTTGCTGTAGGAAATGAAGCTTATGAAACAGTTCCTCGTAACGATATTTTAGAGCCTATTGTTAGCACACTGGATGATTTGGCACTTGAGGTAAAGTCTTGCCTAACAAATTTGGGTGACTTATCCCTGGATTTCATCCACTCCGATGAACTCATCATGACTTCAGGGTATTCCAAGGCAGTACACCATTTTCTTCGTCACGCTGCGAAAAGAGGAAGAAACTTCAAAGTTATAGTGTGTGAATGTTATCCTGACAACTTGGTAATTAGTAGACCAGTTCATTTAATTTTAAAAGGGACATAAAATAGCTGAAGAACTATCAAAGGATAGTGTCGATGTCATTTTGGTCCCTGATAGCCATGT]

[+] EMBL CD196382             [TGTAAATACTCCGATAGATACACCGTAGTCCTCAATACAACTTTGAGGGTTTTAAAAGCTTTTCGCGAGGAAGCACTCAAGTTCCAAATGGGAGAAAACGCAGACTTTGAGGAGAATTTAACAGTTTGTTGATATAAGCCTGACCTTTTTGTAGAACCGCCTTTTTGCTGTAGGAAATGAAGCTTATGAAACAGTTCCTCGTAACGATATTTTAGAGCCTATTGTTAGCACACTGGATGATTTGGCACTTGAGGTAAAGTCTTGCCTAACAAATTTGGGTGACTTATCCCTGGATTTCATCCACTCCGATGAACTCATCATGACTTCAGGGTATTCCAAGGCAGTACACCATTTTCTTCGTCACGCTGCGAAAAGAGGAAGAAACTTCAAAGTTATAGTGTGTGAATGTTATC                                                                                                                 ]
[-] EMBL CD192001             [                                                                                                                                                                                                                                                 TTGGCACTTGAGGTAAAGTCTTGCCTAACAAATTTGGGTGACTTATCCCTGGATTTCATCCACTCCGATGAACTCATCATGACTTCAGGGTATTCCAAGGCAGTACACCATTTTCTTCGTCACGCTGCGAAAAGAGGAAGAAACTTCAAAGTTATAGTGTGTGAATGTTATCCTGACAACTTGGTAATTAGTAGACCAGTTCATTTAATTTTAAAAGGGACATAAAATAGCTGAAGAACTATCAAAGGATAGTGTCGATGTCATTTTGGTCCCTGATAGCCATGT]




>consensus_10041#1
TGTAAATACTCCGATAGATACACCGTAGTCCTCAATACAACTTTGAGGGTTTTAAAAGCT
TTTCGCGAGGAAGCACTCAAGTTCCAAATGGGAGAAAACGCAGACTTTGAGGAGAATTTA
ACAGTTTGTTGATATAAGCCTGACCTTTTTGTAGAACCGCCTTTTTGCTGTAGGAAATGA
AGCTTATGAAACAGTTCCTCGTAACGATATTTTAGAGCCTATTGTTAGCACACTGGATGA
TTTGGCACTTGAGGTAAAGTCTTGCCTAACAAATTTGGGTGACTTATCCCTGGATTTCAT
CCACTCCGATGAACTCATCATGACTTCAGGGTATTCCAAGGCAGTACACCATTTTCTTCG
TCACGCTGCGAAAAGAGGAAGAAACTTCAAAGTTATAGTGTGTGAATGTTATCCTGACAA
CTTGGTAATTAGTAGACCAGTTCATTTAATTTTAAAAGGGACATAAAATAGCTGAAGAAC
TATCAAAGGATAGTGTCGATGTCATTTTGGTCCCTGATAGCCATGT

consensusID : consensus_10041#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 463
fasta sequence

                              [CGGCACGGTATAACACTTCTGGTCTACCTCATTCATAAAAAAAAATGTAGTTGCCGCTTTCTTTTGACTTCTGATTTTAAAAACCGTTAAGATTGATACAATAAAGGTTATCGAAGTGAAATATTATAGAAGCACGGCACTACATATCACCGGAACCAGTGGACGGATTGTTATGATGTTTGTTTTAGTTTACTTGCGAGAGCTTGTGCGTCAATCTAAAACAAGAATGATCTGAATCCGACCATCCGTTCTATGAAAATTTGAGAAAATCGTTGTATCTCCGAAACCACTGGACGGATTTTTATGATGTTTGTTTTAGATTATTTGCGAGAGCGTGTGCGTCAATATAAAACAAGAATGATCTGAATCCGACCATCCGTTTTATGAAATTTTGAGAAAATGCTTGTATCTGTAGTATCGGCTTATATGTTAAGCCCATATACCTTCATTCTAGTTACTGGCC]

[+] EMBL CD065387             [CGGCACGGTATAACACTTCTGGTCTACCTCATTCATAAAAAAAAAAGTAGTTGCCGCTTTCTTTTGACTTCTGATTTTAAAAACCGTTAAGATTGGTACAATAACGGCTATCGAAGTGAAATATTATAGAAGCACGGCACTACATATCACCGGAACCAGTGGACGGATTGTTATGATGTTTGTTTTAGTTTACTTGCGAGAGCTTGTGCGTCAATCTAAAACAAGAATGATCTGAATCCGACCATCCGTTCTATGAAAATTTGAGAAAATCGTTGTATCTCCGAAACCACTGGACGGATTTTTATGATGTTTGTTTTAGATTATTTGCGAGAGCGTGTGCGTCAATATAAAACAAGAATGATCTGAATCCGACCATCCGTTTTATGAAATTTTGAGAAAATGCTTGTATCTGTAGTATCGGCTTATATGTTAAGCCCATATACCTTCATTCTAGTTACTGGCC]
[+] EMBL CD113252             [                                      AAAAAAATGTAGTTGCCGCTTTCTTTTGACTTCTGATTTTAAAAACCGTTAAGATTGATACAATAAAGGTTATCGAAGTGAAATATTATAGAAGCACGGCACTACATATCACCGGAACCAGTGGACGGATTGTTATGATGTTTGTTTTAGTTTACTTGCGAGAGCTTGTGCGTCAATCTAAAACAAGAATGATCTGAATCCGACCATCCGTTCTATGAAAATTTGAGAAA                                                                                                                                                                                                   ]
[+] EMBL CD113255             [                                      AAAAAAATGTAGTTGCCGCTTTCTTTTGACTTCTGATTTTAAAAACCGTTAAGATTGATACAATAAAGGTTATCGAAGTGAAATATTATAGAAGCACGGCACTACATATCACCGGAACCAGTGGACGGATTGTTATGATGTTTGTTTTAGTTTACTTGCGAGAGCTTGTGCGTCAATCTAAAACAAGAATGATCTGAATCCGACCATCCGTTCTATGAAAATTTGAGAAA                                                                                                                                                                                                   ]




>consensus_10041#2
CGGCACGGTATAACACTTCTGGTCTACCTCATTCATAAAAAAAAATGTAGTTGCCGCTTT
CTTTTGACTTCTGATTTTAAAAACCGTTAAGATTGATACAATAAAGGTTATCGAAGTGAA
ATATTATAGAAGCACGGCACTACATATCACCGGAACCAGTGGACGGATTGTTATGATGTT
TGTTTTAGTTTACTTGCGAGAGCTTGTGCGTCAATCTAAAACAAGAATGATCTGAATCCG
ACCATCCGTTCTATGAAAATTTGAGAAAATCGTTGTATCTCCGAAACCACTGGACGGATT
TTTATGATGTTTGTTTTAGATTATTTGCGAGAGCGTGTGCGTCAATATAAAACAAGAATG
ATCTGAATCCGACCATCCGTTTTATGAAATTTTGAGAAAATGCTTGTATCTGTAGTATCG
GCTTATATGTTAAGCCCATATACCTTCATTCTAGTTACTGGCC

consensusID : consensus_10041#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [CTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGATTGGTTCATCACGATGAGCAAGCCCGAACACCATGTCAAAGTAGCATAAACAGTAAATTTCCAATTTGAAATCACTACTTTTTCTTGTATCAGTGTATTCAATCGTGCAATCAAAATTACTCAAGATTCTTATTCTTATATTTAAAGCCCTACTTTTCAGTTCATATGTGCATATGTCAGTATTTTTAAAAAAGTTTTTATGTCAGAGGTCCATCCTCTTCCAGTTGCTTTATTATTTATCATGACAAGACTCAAACAATATAGATCTTGATTTTCTCAAATCTTTCCATCAAGAAAAATTTTTTTAAGGATACTCTACCTTAAAGAATCTCTTATTATGAGATAGGTTTCTTTATATAACAGANACTTATTTACGGATATTTATTGGGGTTTTATTCATTATACTGTCTTTATTCTTCAAAT]

[+] EMBL CD137558             [CTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGATTGGTTCATCACGATGAGCAAGCCCGAACACCATGTCAAAGTAGCATAAACAGTAAATTTCCAATTTGAAATCACTACTTTTTCTTGTATCAGTGTATTCAATCGTGCAATCAAAATTACTCAAGATTCTTATTCTTATATTTAAAGCCCTACTTTTCAGTTCATATGTGCATATGTCAGTATTTTTAAAAAAGTTTTTATGTCAGAGGTCCATCCTCTTCCAGTTGCTTTATTATTTATCATGACAAGACTCAAACAATATAGATCTTGATTTTCTCAAATCTTTCCATCAAGAAAAATTTTTTTAAGGATACTCTACCTTAAAGAATCTCTTATTATGAGATAGGTTTCTTTATATAACAGANACTTATTTACGGATATTTATTGGGGTTTTATTCATTATACTGTCTTTATTCTTCAAAT]




>consensus_10041#3
CTTGAGGAACGATTGTTCCAGCCAGTATAGCTCGATTGGTTCATCACGATGAGCAAGCCC
GAACACCATGTCAAAGTAGCATAAACAGTAAATTTCCAATTTGAAATCACTACTTTTTCT
TGTATCAGTGTATTCAATCGTGCAATCAAAATTACTCAAGATTCTTATTCTTATATTTAA
AGCCCTACTTTTCAGTTCATATGTGCATATGTCAGTATTTTTAAAAAAGTTTTTATGTCA
GAGGTCCATCCTCTTCCAGTTGCTTTATTATTTATCATGACAAGACTCAAACAATATAGA
TCTTGATTTTCTCAAATCTTTCCATCAAGAAAAATTTTTTTAAGGATACTCTACCTTAAA
GAATCTCTTATTATGAGATAGGTTTCTTTATATAACAGANACTTATTTACGGATATTTAT
TGGGGTTTTATTCATTATACTGTCTTTATTCTTCAAAT

consensusID : consensus_10041#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [TTCTATTACAATCTTGTGTACAGCGACGTGCATATAGTTTGCCTTCACAACACCATCCTGGTAGACAATCATAATCAGCTACACATAAATTTCGGTAAGATCCAGCAATTTATTTCTAGCATTCCTAAGTTGACATTGCAGTGTTTTTATTTTACAGAGCTGTTATAACGTGTGAATGTGTGCGTGTCCTGTTTGATTTATGAACGTGCTGATTTCCGCCAATGAGAGAAGAGCGAATTATCGATTGGAGCAATGATACACAAAAGCCGTATGAATAGTCTTGGGTACTACTTATCAGTCCTGTTATCTGACTAGACCAGCCAAGTCAAGA]

[+] EMBL CD187592             [TTCTATTACAATCTTGTGTACAGCGACGTGCATATAGTTTGCCTTCACAACACCATCCTGGTAGACAATCATAATCAGCTACACATAAATTTCGGTAAGATCCAGCAATTTATTTCTAGCATTCCTAAGTTGACATTGCAGTGTTTTTATTTTACAGAGCTGTTATAACGTGTGAATGTGTGCGTGTCCTGTTTGATTTATGAACGTGCTGATTTCCGCCAATGAGAGAAGAGCGAATTATCGATTGGAGCAATGATACACAAAAGCCGTATGAATAGTCTTGGGTACTACTTATCAGTCCTGTTATCTGACTAGACCAGCCAAGTCAAGA]




>consensus_10041#4
TTCTATTACAATCTTGTGTACAGCGACGTGCATATAGTTTGCCTTCACAACACCATCCTG
GTAGACAATCATAATCAGCTACACATAAATTTCGGTAAGATCCAGCAATTTATTTCTAGC
ATTCCTAAGTTGACATTGCAGTGTTTTTATTTTACAGAGCTGTTATAACGTGTGAATGTG
TGCGTGTCCTGTTTGATTTATGAACGTGCTGATTTCCGCCAATGAGAGAAGAGCGAATTA
TCGATTGGAGCAATGATACACAAAAGCCGTATGAATAGTCTTGGGTACTACTTATCAGTC
CTGTTATCTGACTAGACCAGCCAAGTCAAGA

consensusID : consensus_10041#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [GTAGCTCCTCAGGGGGCTACTACCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCTCATCCCGTAGCAAACTAAATCGCTAAAACAAACGCTAACCAGAAAAAAAATAATTCAGACCATTTAAATTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCAAGATGAAAGCCGAAATTTTTCGGAAGTCACGAGGTCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTAAGTTCTTTTAATTATTCAAGTATATTTCAATTACTTAATAAACATTAATTAAATGAGTCATTNTCATATAG]

[+] EMBL CD171401             [GTAGCTCCTCAGGGGGCTACTACCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCTCATCCCGTAGCAAACTAAATCGCTAAAACAAACGCTAACCAGAAAAAAAATAATTCAGACCATTTAAATTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCAAGATGAAAGCCGAAATTTTTCGGAAGTCACGAGGTCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTAAGTTCTTTTAATTATTCAAGTATATTTCAATTACTTAATAAACATTAATTAAATGAGTCATTNTCATATAG]




>consensus_10041#5
GTAGCTCCTCAGGGGGCTACTACCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCAT
GGGGTTAGCGACCTCATCCCGTAGCAAACTAAATCGCTAAAACAAACGCTAACCAGAAAA
AAAATAATTCAGACCATTTAAATTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTC
AAGATGAAAGCCGAAATTTTTCGGAAGTCACGAGGTCGATGCACCTTCTAACAACCAGAG
CAACACTCTTTATAGGTAAGTTCTTTTAATTATTCAAGTATATTTCAATTACTTAATAAA
CATTAATTAAATGAGTCATTNTCATATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      CCCCCCTTCCTCTTTCTTCCGATGATTGACTGGATTATGAAGACTTCGACATCTGAGGGG 60
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      TGTAAATACTCCGATAGATACACCGTAGTCCTCAATACAACTTTGAGGGTTTTAAAAGCT 60
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      GAAGCACAGAATATAATAAACATTTTAGAACCAATTAGACGATTCGGACTTCGCAGATCA 120
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      TTTCGCGAGGAAGCACTCAAGTTCCAAATGGGAGAAAACGCAGACTTTGAGGAGAATTTA 120
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      CCCAGCTCTTCTATCCCATACACACCAACAAATTCAGGCGAAGACTGTCAGTGTAGCAGA 180
consensus_10041#3      --------------------------CTTGAGGAACGATTGTTCCAGCCAGTATAGCTCG 34
consensus_10041#2      ----------------------------------CGGCACGGTATAACACTTCTGGTCTA 26
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      ACAGTTT-GTTGATATAAGCCTGACCTTTTTGTAGAACCGCCTTTTTGCTGTAGGAAATG 179
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      AGCCACT-GCAACAGTAGGCT---CCAACATACACAAGGGAAAAGCAAGATCCTCAAATA 236
consensus_10041#3      ATTGGTTCATCACGATGAGCAAGCCCGAACACCATGTCAAAGTAGCATAAACAGTAAATT 94
consensus_10041#2      CCTCATTCATAAAAAAAAATGTAGTTGCCGCTTTCTTTTGACTTCTGATTTTAAAAACCG 86
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      AAGCTTATGAAACAGTTCCTCGTAACGATATTTTAGAGCCTATTGTTAGC--ACA-CTGG 236
consensus_10041#5      -----------GTAGCTCCTCAGGGGGCTACTACCGGTCCCAAGCCCGGGTAAAG-GAGG 48
consensus_10041#0      CAACACGGAGAACACCAACCCA--ATCACACTTCATGGCGAAACCCTGGAACAGGTGAAA 294
consensus_10041#3      TCCAATTTGAAATCACTACTTTTTCTTGTATCAGTGTATTCAATCGTG---CAATCAAAA 151
consensus_10041#2      TTAAGATTGATACAATAAAGGTTATCGAAGTGAAATATTATAGAAGCACGGCACT-ACAT 145
consensus_10041#4      --------------------------------TTCTATTACAATCTTGTG-TACAGCGAC 27
                                                                *          *       

consensus_10041#1      ATGATTTGGCACTTGA--GGTAAAGTCTTG---CCTAACAAATTTGG-GTGACTTATCCC 290
consensus_10041#5      AGGGTTGGGCATGGGGTTAGCGACCTCATC---CCGTAGCAAACTAA-ATCGCTAAAAC- 103
consensus_10041#0      ATGTTCACGTACCTGGTCAGCATCACCGATGAACGTGAAGGATCTGATGCCGATGTAAAG 354
consensus_10041#3      TTACTCAAGATTCTTATTCTTATATTTAAAG--CCCTACT--TTTCAGTTCATATGTGC- 206
consensus_10041#2      ATCACCGGAACCAGTGGACGGATTGTTATGATGTTTGTTTTAGTTTA-CTTGCGAGAGCT 204
consensus_10041#4      GTGCATATAGTTTGCCTTCACAACACCATCC--TGGTAGACAATCATAATCAGCTACACA 85
                                                                                   

consensus_10041#1      TGGATTTCATCCACTCCGATGAACTCATCATGAC---TTCAGGGTATTCCAAGGCAGTAC 347
consensus_10041#5      -AAACGCTAACCAGA--AAAAAAATAATTCAGACC-ATTTAAATTCTGCCCTGGGAGTTG 159
consensus_10041#0      GCAAGGATTGGCAAAGCAAGGACAGCATTCCTAC--AGTCGAAGAACATATCGAACTCAA 412
consensus_10041#3      -ATATGTCAGTATTTTTAAAAAAGTTTTTATGTCAGAGGTCCATCCTCTTCCAGTTGCTT 265
consensus_10041#2      TGTGCGTCAATCTAAAACAAGAATGATCTGAATCC--GACCATCCGTTCTATGAAAATTT 262
consensus_10041#4      TAAATTTCGGTAAGATCCAGCAATTTATTTCTAGC-ATTCCTAAGTTGACATTGCAGTGT 144
                                         *  *                                      

consensus_10041#1      ACCATTTTCTTCGTCAC--GCTGCGAA--AAGAGGAA-----------GAAACTTC---A 389
consensus_10041#5      AAGGAATAATT-ATGAC--GCCTCAAG--ATGAAAGCC----------GAAATTTTTCGG 204
consensus_10041#0      AACAACTGTCTCTCAACCAATATCAAA--GTGAGAATCTTCAATG---CGAATGTCAAGA 467
consensus_10041#3      TATTATTTATC-ATGACAAGACTCAAACAATATAGATCTTGATTTTCTCAAATCTTTCCA 324
consensus_10041#2      GAGAAAATCGTTGTATC--TCCGAAACCACTGGACGGATTTTTATGATGTTTGTTTTAGA 320
consensus_10041#4      TTTTATTTTACAGAGCT--GTTATAACGTGTGAATGTGTGCGT-----GTCCTGTTTGAT 197
                                                *                            *     

consensus_10041#1      AAGTTATAGTGTGTGAA--TGTTATCCTGACAACTTG-GTAA-----TTAGTAGACCAGT 441
consensus_10041#5      AAGTCACGAGGTCGATG--CACC-TTCTAACAACCAGAGCAACACTCTTTATAGGTAAGT 261
consensus_10041#0      CAGTTCTACTGTACAGAGCTGAAATTCAGATTACTACTACAAC--CATCATCACAAAAGT 525
consensus_10041#3      TCAAGAAAAATTTTTTTAAGGATACTCTACCTTAAAGAATCTC-TTATTATGAGATAGGT 383
consensus_10041#2      TTATTTGCGAGAGCGTGTGCGTCAATATAAAACAAGAATGATCTGAATCCGACCATCCGT 380
consensus_10041#4      TTATGAACGTGCTGATTTCCGCCAATGAGAGAAGAGCGAATTATCGATTGGAGCAATGAT 257
                                                                      *           *

consensus_10041#1      TCATTTA-ATTTTAAAAGGGACATAA-----AATAGCTGAAGAACTATCAAAGGATAGT- 494
consensus_10041#5      TCTTTTA-ATTATTCAAGTATATTTC-----AATTACTTAATAAACATTAATTAAATGA- 314
consensus_10041#0      ACAAATA-TTTATAAACAGTTGTCTACGCA-AGACATTCAATGTCCGTTCACTGGATACC 583
consensus_10041#3      TTCTTTATATAACAGANACTTATTTACGGATATTTATTGGGGTTTTATTCATT--ATACT 441
consensus_10041#2      TTTATGAAATTTTGAGAAAATGCTTGT--ATCTGTAGTATCGGCTTATATGTTAAGCCCA 438
consensus_10041#4      ACACAAAAGCCGTATGAATAGTCTTGG--GTACTACTTATCAGTCCTGTTATCTGACTAG 315
                             *                              *                      

consensus_10041#1      GTCGATGTCATTTTGGTCCCTGATAGCCATGT---------------------------- 526
consensus_10041#5      GTCATTNTCATATAG--------------------------------------------- 329
consensus_10041#0      ATCAGCAACAGCTTACTATGGGAGAAAACAAACCAGCTTCTATCTGAAGAGGAAATTAGG 643
consensus_10041#3      GTCTTTATTCTTCAAAT------------------------------------------- 458
consensus_10041#2      TATACCTTCATTCTAGTTACTGGCC----------------------------------- 463
consensus_10041#4      ACCAGCCAAGTCAAGA-------------------------------------------- 331
                                                                                   

consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      AAAAGACGCTGGAAGTGGATAGGACATATATTGTGGAAATCACCAAACTGCATCACGAGG 703
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      CAATCGTTAACTTTGAATCCTGAAGGGGAACATAAAATCGGAATACCAAGGAACACATTG 763
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      CGCTGAGAATTGGGAGCTGACATGAAAAGGGTGAATGTTGACTGGAAAAAACTGGAAAGG 823
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      ATTGCTTGTGACATGGTTGGATGGAGAATGCTGGTGATCGGCCTATGTTCCTTCAGGAGG 883
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      GGTGACAGACATAGTTTCAAATCATCGTTATCTCTGTAATCTTGTCATGGAGAAAGCGAA 943
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      ------------------------------------------------------------
consensus_10041#5      ------------------------------------------------------------
consensus_10041#0      ATCTCACCGACCATGGTTCGGTATTGAACAAGAATATGCTCTATTAGATATCGATGGTTA 1003
consensus_10041#3      ------------------------------------------------------------
consensus_10041#2      ------------------------------------------------------------
consensus_10041#4      ------------------------------------------------------------
                                                                                   

consensus_10041#1      -------------------------
consensus_10041#5      -------------------------
consensus_10041#0      TCCATTACAATGGCCTANAAATGGT 1028
consensus_10041#3      -------------------------
consensus_10041#2      -------------------------
consensus_10041#4      -------------------------