cluster # 10042

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Schistosoma mansoni
cluster # 10042 cluster # 10042 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10042#0 length = 688 sequences # 9

consensus_10042#1 length = 169 sequences # 4

consensusID : consensus_10042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 688
fasta sequence

                              [AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCATGTTGCCTGATAGAAGAATTGTGATGAAG]

[+] EMBL CD162527             [AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGCTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCGCTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACGCTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAGCTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAG                                                                                                                                                                                                                                                         ]
[+] EMBL CD162550             [AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTTTCCAATTGAACCACCAAAAGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAG                                                                                                                                                                                                                                                         ]
[+] EMBL CD186975             [ GGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTAT                                                                                                                                                                                                                                                                      ]
[+] EMBL CD186815             [ GGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTTGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCGCCNAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATT                                                                                                                                                                                                                                                             ]
[+] EMBL CD078230             [                   GTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGTACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCTCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD135755             [                                                                         TGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCAGTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTANAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCATGTTGCCTGATAGAAGAATTGTGATGAAG]
[-] EMBL CD141579             [                                                                                             cgnnAGG ATTCAGTTAATTCTAAATGAGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACNCCTTATGATGGTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCAGTATCCAATTGAACCACCAAAGGCTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCGTAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTATAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGTTGCTATTAGAAGATTACAGTGAATTTGTGGCAGA                                                                                                                                                                                                                                          ]
[-] EMBL CD193773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGAAGTCCATGCTTA TGGCCCGTTCGGGGACAACCAAAAATCAGTAGTCAGAAGTCCCATAAGNACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTA                                                                ]
[+] EMBL CD136426             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTACATGCTTATTGGCACGTTCGGAAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCG                                                                  ]




>consensus_10042#0
AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGT
ACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATG
AGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATG
GTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGG
CTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCG
TAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTA
TAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGT
TGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATG
CTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGC
ATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACAC
AACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCAT
GTTGCCTGATAGAAGAATTGTGATGAAG

consensusID : consensus_10042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 169
fasta sequence

                              [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG]

[-] EMBL CD136429             [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG]
[-] EMBL CD136397             [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGT                   ]
[-] EMBL CD136383             [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGT                   ]
[-] EMBL CD136402             [GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACACAACGCAATAACTCGTCATTTCGT                   ]




>consensus_10042#1
GTACATGCTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAA
GACGAGCATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAA
GTGACACAACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10042#0      AGGTCAACCCACAACAGGTGTTGATGGAGAATGCGGTTCCGGAATTCGCTCGTCGTTTGT 60
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      ACAAAGAATGGCGTGATTTTACAGCTGAACCAATCGAAGGAATTCAGTTAATTCTAAATG 120
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      AGCAAGATATGACGGAAGTTCAAGTCGTATTTGATGGTCCTGTTGGTACCCCTTATGATG 180
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      GTGGCAAATTCCGTCTAAAAATGTTGATACCCCTTCACTATCCAATTGAACCACCAAAGG 240
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      CTTATTTTTGCACGAAAATATTCCATCCAAACATAGCACCAAACACTGGAGAGGTTTGCG 300
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      TAAACACACTGAAGAAGGATTGGAAATCCAATTTAGGACTACGGCATATCCTTCTAACTA 360
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      TAAGGTGTTTGTTGATAGAACCCAATCCAGAATCAGCTCTTAATGAGGAAGCTGGAAAGT 420
consensus_10042#1      ------------------------------------------------------------
                                                                                   

consensus_10042#0      TGCTATTAGAAGATTACAGTGAATTTGTGGCAGAAGCTCGGCTCCTCACAGAAGTACATG 480
consensus_10042#1      -----------------------------------------------------GTACATG 7
                                                                            *******

consensus_10042#0      CTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGC 540
consensus_10042#1      CTTATTGGCACGTTCGGGAACAAACAAAAATCAGTAGCCAGAAGTCCCATAAAGACGAGC 67
                       ************************************************************

consensus_10042#0      ATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACAC 600
consensus_10042#1      ATGCAAGTGTCGATATGTCAGGTAATTCGACTGATACGCGTACACATTCTAAAGTGACAC 127
                       ************************************************************

consensus_10042#0      AACGCAATAACTCGTCATTTCGTAAAGCGCTCAAACGGTTGTAGTACCTAAGAGGGNCAT 660
consensus_10042#1      AACGCAATAACTCGTCATTTCGTAAAGCGCTCTAGCCGCTCG------------------ 169
                       ******************************** * * * *                    

consensus_10042#0      GTTGCCTGATAGAAGAATTGTGATGAAG 688
consensus_10042#1      ----------------------------