cluster # 10043

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Schistosoma mansoni
cluster # 10043 cluster # 10043 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10043#0 length = 769 sequences # 3

consensus_10043#1 length = 737 sequences # 10

consensusID : consensus_10043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 769
fasta sequence

                              [GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAATGAATGCCAAAAGTTGGCTGGTAATAATTATTGACTTTTACAATACACAACATACGCTGCAGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTTGGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTTTTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGAGTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTG]

[+] EMBL CD073193             [GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAATGAATGCCAAAAGTTGGCTGGTAATAATTATTGACTTTTACAATACACAACATACGCTGCAGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTTGGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTTTTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGA                                                                                                                                                                            ]
[+] EMBL AI067547             [                                                                                                                             TCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTTGGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTTTTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACcg                                                                                                                                                                                                                                                                  ]
[-] EMBL CD078731             [                                                                                                                                                                                                                                                                                                                                                                                                                                  GAGCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTGTGGCAACTGTTCATAAACTTGAGTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTG]




>consensus_10043#0
GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAA
TGAATGCCAAAAGTTGGCTGGTAATAATTATTGACTTTTACAATACACAACATACGCTGC
AGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGAGCGAAGCACATAAATTCAATTT
GGTAAAACAATTGTTTCTGCTGCGATTTTTAATAAATCTTTTGTTTTTAATCGCCAGTTT
TTAGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTAACACAA
CGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTGTAAAAG
TAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCTTGTAAACCAATTACGA
GCTTTCATGACCAGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTACCAGTGGA
TCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTCTAGGAGTC
ATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGAGTA
AGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCT
AAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGA
GCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTG

consensusID : consensus_10043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 737
fasta sequence

                              [GTTGGACATTCTTGAAGTGCTTTTGAAATAAGTGAATCAGCTACAGGTTTCAAATTAGCTCTTACTTCTAATCTGATAGCTTCCAACCATAATTCTGGTGTTTTAGGATTTTGTGAACGGGCCTTCTCCAAAATAGAACGTGCTTTAGTTAAATTACATTGTCGTTCTTCAAATCTGGCCAATTGCAACCACAG-AGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA-TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTGGCCCCCCCACTTTCGCTTGAGGACAATGACAACAGCTTGCGCAAAAGTTCTTGTAAAGTTTCTCTCGTTCCATGATTTCGTTCAAAATAAGCAGCACGTAGCCAGATACTTT]

[-] EMBL CD112744             [GTTGGACATTCTTGAAGTGCTTTTGAAATAAGTGAATCAGCTACAGGTTTCAAATTAGCTCTTACTTCTAATCTGATAGCTTCCAACCATAATTCTGGTGTTTTAGGATTTTGTGAACGGGCCTTCTCCAAAATAGAACGTGCTTTAGTTAAATTACATTGTCGTTCTTCAAATCTGGCCAATTGCAACCACAG AGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGC                                                                                                                                                                                                                                                             ]
[+] EMBL CD202965             [                                                                                                                                                                                    AATTGCAACCACAGAAGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATATTTCTTTA                                                                                                                                                                                                                                                  ]
[+] EMBL CD113088             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG                                                                                                                ]
[+] EMBL CD201074             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTGGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG                                                                                                                ]
[+] EMBL CD201080             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTAGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCGTACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG                                                                                                                ]
[+] EMBL CD201099             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG                                                                                                                ]
[+] EMBL CD201131             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTGTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAAC                                                                                                                                  ]
[+] EMBL CD201054             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGGTAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGATTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAAC                                                                                                                                  ]
[+] EMBL CD201120             [                                                                                                                                                                                                     CAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTTCTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCACGTGCATA TTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTG                                                                                                                ]
[-] EMBL CD164004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCTGAATTGGGATTAGCTTCAAATGCACGAGATAGAATAGAACGAGGTGCTGGAACATCACCAGCATTCCAACGTGTTTTTGCTGCCATAAGCCCCCCCACTTTCGCTTGAGGACAATGACAACAGCTTGCGCAAAAGTTCTTGTAAAGTTTCTCTCGTTCCATGATTTCGTTCAAAATAAGCAGCACGTAGCCAGATACTTT]




>consensus_10043#1
GTTGGACATTCTTGAAGTGCTTTTGAAATAAGTGAATCAGCTACAGGTTTCAAATTAGCT
CTTACTTCTAATCTGATAGCTTCCAACCATAATTCTGGTGTTTTAGGATTTTGTGAACGG
GCCTTCTCCAAAATAGAACGTGCTTTAGTTAAATTACATTGTCGTTCTTCAAATCTGGCC
AATTGCAACCACAGAGCAGTATAATGTGGGTTATGATTCAGTCCCTCACGATAGGTGTTT
CTAGCACGTTCTTTTAATGATTCAGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGT
TCATAAACTTGACTAAGCATTAACCACAACTTTGGTGCCTGATTATATGTTAATGTAGCT
TTTTGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCATTCCAATCTAGCTGCT
TTCATCCATACACGAGCTGTAGAAGCAGAAGCACAAGCTTTATCTAGTAATCGACGTGCA
CGTGCATATTCTTTATTTTCTGACTCAAGTTTTACAGCAGCTAACCATATCTCCTCTGAA
TTGGGATTAGCTTCAAATGCACGAGCTAGAATAGAACGAGCTGCTGGAACATCACCAGCA
AGCCAACGTGTTTTTGCTGCCATTGGCCCCCCCACTTTCGCTTGAGGACAATGACAACAG
CTTGCGCAAAAGTTCTTGTAAAGTTTCTCTCGTTCCATGATTTCGTTCAAAATAAGCAGC
ACGTAGCCAGATACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10043#0      GCTTTTTATTAAACCAAACACGATGTGTAAAACGAAAAATGAGTTGTCCTTTACGCGTAA 60
consensus_10043#1      -------GTTGGAC-ATTCTTGAAGTGCT---TTTGAAATAAGTGAATCA------GCTA 43
                               **  ** *  *  ** ***         **** ***    *       *  *

consensus_10043#0      TGAATGCCAAAAGTTGGCTGGTAATAATTAT-TGACTTTTACAATACACAACATACGCTG 119
consensus_10043#1      CAGGTTTCAAA--TTAGCTCTTACTTCTAATCTGATAGCTTCCAACCATAAT-TCTGGTG 100
                           *  ****  ** ***  ** *  * ** ***    * * *  ** **  *  * **

consensus_10043#0      CAGTTTTCTTCTGTTTGCGAGAATTATACAAATATAGGA-GCGAAGCACATAAATTCAAT 178
consensus_10043#1      TTTTAGGATTTTGTGAACGGGCCTTCTCCAAA-ATAGAACGTGCTTTAGTTAAATTACAT 159
                          *    ** ***   ** *  ** * **** **** * * *    *  ******  **

consensus_10043#0      T-TGGTAAAACAATTGTTTCTG-CTGCGATTTTTAATAAATCTTTTGTTTTTAATCGC-C 235
consensus_10043#1      TGTCGTTCTTCAAATCTGGCCAATTGCAACCACAGAGCAGTATAATGTGGGTTATGATTC 219
                       * * **    *** * *  *    *** *      *  * * *  ***   * **    *

consensus_10043#0      AGTTTTT-AGGATCTTTACTGATTTGGCACCATACTTCACCATGATGAGGTTCGGCAGTA 294
consensus_10043#1      AGTCCCTCACGATAGGTGTT--TCTAGCACGTTCTTTTA--ATGATTCAGCCTCATTCGG 275
                       ***   * * ***   *  *  * * ****  *  ** *  *****   *          

consensus_10043#0      ACACAACGTCGGTATACTTCTTTCTGTTGATCTTCCGTCCCGTGTTGTAATTCAAATTTG 354
consensus_10043#1      TTTTAAGTTT--TCTTCTGACAACTGTTCATAAACTTGACTAAGCATTAACCACAACTTT 333
                           **  *   * * **     ***** **   *    *   *   ***    ** ** 

consensus_10043#0      TAAAAGTAAGCCCATGCATCGCCAAGATCTGGTTCTAGTTTCACCGTTCT-TGTAAACCA 413
consensus_10043#1      GGTGCCTGATTATATGTTAATGTAGCTTTTTGTAACATTTCTAAAGCTTTATTTAATTCA 393
                             * *    ***       *   * * **   * **  *  * * * * ***  **

consensus_10043#0      ATTACGAGCTTTCATGACC-AGCCGTTCACACCAAAACATTTTGGATACAGCTAGAAGTA 472
consensus_10043#1      CCTAGACACCATTCCAATCTAGCTGCTTTCATCCATACACGAGCTGTAGAAGCAGAAGCA 453
                         **    *  *    * * *** * *  ** * * ***       ** *   ***** *

consensus_10043#0      CCAGTGGATCATGTTCACATTTCTTCAAAGCGTCCACTGATTTGCTTTTACGTTGAGCTC 532
consensus_10043#1      CAAGCTTTATCTAGTAAT-CGACGTGCACGTGCATATTCTTTATTTTCTGACTCAAGTTT 512
                       * **       *  * *     * *  * * *   * *  **   ** *   *  ** * 

consensus_10043#0      TAGGAGTCATAAATATTGCCTCATTCGGTTTTAAGTTTTCTTCTGACAACTGTTCATAAA 592
consensus_10043#1      TAC-AGCAGCTAACCATATCTCCTCTGAATTGGGATTAGCTTCAAATGCACGAGC-TAGA 570
                       **  **     **   *  *** *  *  **    **  ****  *     *  * ** *

consensus_10043#0      CTTGAGTAAGCATTAACCACAACTTTGGT--GCC--TGATTATATGTTAATGTAGCTTTT 648
consensus_10043#1      ATAGAACGAGCTGCTGGAACATCACCAGCAAGCCAACGTGTTTTTGCTGCCATTGGCCCC 630
                        * **   ***       *** *    *   ***   *  * * ** *    * *     

consensus_10043#0      TGTAACATTTCTAAAGCTTTATTTAATTCACCTAGACACCA-TTCCAATCTAGCTGCTTT 707
consensus_10043#1      CCCACTTTCGCTTGAGGACAATGACAACAGCTTGCGCAAAAGTTCTTGTAAAGTTTCTCT 690
                          *   *  **  **    **   *    * *   **  * ***   *  ** * ** *

consensus_10043#0      CATCCATACACGAGCTGTAGAAGCAGAAGCACA-AGCTTTATCTAGTAATCGACGTGCAC 766
consensus_10043#1      CGTTCCATGATTTCGTTCAAAATAAGCAGCACGTAGCCAGATACTTT------------- 737
                       * * *    *     *  * **  ** *****  ***   **    *             

consensus_10043#0      GTG 769
consensus_10043#1      ---