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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 711 fasta sequence
[CTCAGTAGTTGATACAGGATTTTGTACGATGCTTAACGATGTTACAGTAGCTTGTAAACGTCTGAGATGAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC-TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA-GGTTTTGAACAGCAC-CAACAATATAAAAGTTAGCTTCACGTTTTGAAACTCCATGACTGGAATTATTTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGATCTCTTCTGACCTCGGTTTCTTGTCCGCATTATATCAGAAAAACGAGGACAGTCGCAAAAGTTTTGAAAAACAAGAATTTGACCGATAAATCTATTTTAGATACACGCAACACAGTAGCCAAATCGAAACCAA]
[-] EMBL CD095415 [CTCAGTAGTTGATACAGGATTTTGTACGATGCTTAACGATGTTACAGTAGCTTGTAAACGTCTGAGATGAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTAT ]
[+] EMBL CD183064 [ GAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCGCCTAGTGGATTAGTAGGTAGAGCAGGAGTTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCACNNCAC ATAT AAAGTTAGCTTCAC ]
[+] EMBL CD183155 [ tgggAGGAGGGTTGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACCTTTGCGAATAACTGTGCGCGGACTATGACGACGAAAATGCAGGGTTTTGAACAGCAC CAACATTATAAAGGTTAGCTT ]
[-] EMBL CD182918 [ AACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGCATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ]
[-] EMBL CD182976 [ AACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCGGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ]
[-] EMBL CD183107 [ AACTGCTTGATGTCGAACATGATACAGCGCTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ]
[-] EMBL CD095055 [ CTAACGATAGAATTAGTCACCAAAGTACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTTCACGTTTTGAAACTCCATGACTGGAATTATTTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGATCTCTTCTGACCTCGGTTTCTTGTCCGCATTATATCAGAAAAACGAGGACAGTCGCAAAAGTTTTGAAAAACAAGAATTTGACCGATAAATCTATTTTAGATACACGCAACACAGTAGCCAAATCGAAACCAA]
[-] EMBL CD183145 [ ACTCGTCAGAGAGTTGGTAGACGTGACTGGTATGCTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGTATTTTCGGTATGGTGAGACTACCAGTATAAACC TTGCGAATAACTTTGCGCGGACTATGACGACGAAATGGCA GGTTTTGAACAGCAC CAACAATATAAAAGTTAGCTT ]
consensusID : consensus_10045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 568 fasta sequence
[TTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGCTAAGTTCGGGTGGTAGACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCTGGTTTACTATCAGCACTATACAGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAGTGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACATAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAG-GCTAAA-CAAGAAATTCGCCTTGAACGATTGTGACTTTTGACTTTTTTCCA]
[-] EMBL CD129043 [TTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTCGAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGACAAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGCTAAGTTCGGGTGGTAGACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCTGGTTTACTATCAGCACTATACAGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAGTGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACCTAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACCTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAG GCTAAA CAAGAAATTCGCCTTGAACGATCGTGACTTTTGACTTTTTTCCA]
[+] EMBL CD167920 [ ATATAGCTAAGTTCGGGTGGTAGACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTACCAAGGGGTCCGAAAACAG ]
[-] EMBL CD129032 [ CTTAGTCGAGCCAGAAGATGAGTTGACTTGCAGATGCCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCTGGTTTACTATCAGCACTATACAGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAGTGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACATAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAACGTCGTGAG GCTAAA CAAGAAATTCGCCTTGAACGATTGTGACTTTTGACTTTTTTCCA]
[-] EMBL CD129153 [ CACAATCAGAATGGAACTCTCGTACATAATTTGCTGAGCGATGAACAAGTAAACCCGAATCACTTTGATATCCAACAAGCAACGAAGAATCACTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAG GCTAAA CAAGAAATTCGCCTTGAACGATTGTGACTTTTGACTTTTTTCCA]
[-] EMBL CD129022 [ CTTGAGTCTTTATAATGATGGAACTTACTTATATGACGTGAATGTGATAAATAAGAATGTCGTGAGTGCTAAACCAAGAAATatctgc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10045#0 CTCAGTAGTTGATACAGGATTTTGTACGATGCTTAACGATGTTACAGTAGCTTGTAAACG 60
consensus_10045#1 --------TTGAGTTAGTATTTGAAGAGTTACT----GATATGA--ATAG-TCGAAGACT 45
**** ** **** * * ** *** * * *** * * * **
consensus_10045#0 TCTGAGATGAGTTGCTGAAGAATAAATGGGTACTGACTGAGCGTCATGGAAAAGGAGGGT 120
consensus_10045#1 CTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGA-CGAAATGCGAGAC-AAGAT 103
***** * * * * * * * * * ***** ** *** * * * * *
consensus_10045#0 TGGTGCACATGAGTTTAGGCCAACTGAACTGCTTGATGTCGAACATGATACAGC--GCTA 178
consensus_10045#1 TGTTGAGCGTTTATGTA---CATCTGTATTACTAGTTATATAGCTAAGTTCGGGTGGTAG 160
** ** * * * ** ** *** * * ** * * * * * * * * *
consensus_10045#0 ACGATAG-AATTAGTCACCAAAGTACTCG--TCAGAGAGTTGGTAGACGTGACTGGTATG 235
consensus_10045#1 ACAAGAGCGATGAGTTTCTATCTTAGTCGAGCCAGAAGATGAGTTGACTTG---CAGATG 217
** * ** ** *** * * ** *** **** * ** *** ** ***
consensus_10045#0 CTAACACTCGGACCACCTAGTGGATTAGTAGGTAGAGCAGGAATTCTCTTGCGATTAAGT 295
consensus_10045#1 CCGAAGTGAAGCTTTATCAAGGGGTCCGAAAACAGAATAGTAATGTCCT---GGTTTACT 274
* * * * ** * * * *** ** *** ** * ** * *
consensus_10045#0 ATTTTCGGTATGGTGAGACTACCAGTATAAACCTTGCGAATAACTTTGCGCGGACTATGA 355
consensus_10045#1 ATCAGCACTATAC--AGAACATGATGACTGACTTTCCTGCTGACACTCAATTTTTCAAAG 332
** * *** *** * * * ** ** * * ** * *
consensus_10045#0 CGACGAAATGGCAG-GTTTTGAACAGC--ACCAACAATATAAAAGTTAGCTTCACGTTTT 412
consensus_10045#1 TGTTTATACCGGAGCGTTCCAGACTCCTCACAATCAGAATGGAACTCTCGTACATAATTT 392
* * * * ** *** ** * ** * ** ** ** * * ** ***
consensus_10045#0 GAAACTCCATGACTGGAATTATTTGAGTTAGTATTTGAAGAGTTACTGATATGAATAGTC 472
consensus_10045#1 GCTGAGCGATGAACAAGTAAACCCGAATCACT--TTGA----TATCCAACAAGCAACGAA 446
* * **** * ** * * * **** * * * * * * *
consensus_10045#0 GAAGACTCTTGAGAAGTCACGTTAATGTGTTCGTCGTCCTTTACTGACGAAATGCGAGAC 532
consensus_10045#1 GAAT-CACTTGAGTCTTTATAATGATG-GAACTTACTTATATGACGTGAATGTGATAAAT 504
*** * ****** * * * *** * * * * * * * * ** * *
consensus_10045#0 AAGATTGTTGAGCGTTTATGTACATCTGTATTACTAGTTATATAGATCTCTTCTGACCTC 592
consensus_10045#1 AAGAATGTCGTGAGGCTAAACAAGA---------AATTCGCCTTGAACGATTGTGACTTT 555
**** *** * * * ** * * * * ** * ** **** *
consensus_10045#0 GGTTTCTTGTCCGCATTATATCAGAAAAACGAGGACAGTCGCAAAAGTTTTGAAAAACAA 652
consensus_10045#1 TGACTTTTTTCCA----------------------------------------------- 568
* * ** ***
consensus_10045#0 GAATTTGACCGATAAATCTATTTTAGATACACGCAACACAGTAGCCAAATCGAAACCAA 711
consensus_10045#1 -----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||