cluster # 10048

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Schistosoma mansoni
cluster # 10048 cluster # 10048 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10048#0 length = 1129 sequences # 10

consensus_10048#1 length = 280 sequences # 3

consensusID : consensus_10048#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1129
fasta sequence

                              [CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCAACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTGTGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTGGNGATATTCTTTTTACATAAATTGACGATTATGGTGGTATTACGATTNCGGANANTCNTNNCATTTCTCTCATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG]

[-] EMBL CD066946             [CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCAACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTGGTTCct                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD196677             [             CCTTCCTTTCTAATTCGTTTATTTCTTGTTTCTTATCTGATTTCTCAACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD078438             [                                                                                    GGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGCAGCGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTCGGATTTTGAATAATTTCTTACTGGATCATTACTACTCTGCGATGAGCACGGAAACTTTGAACGATACACTTGTTATACCAGAGCAGAATATACTAACCATATTAAATAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGCTCATCGGCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGATTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAACTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGATTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD155711             [                                                                                             GCTACTTCGATTGAAGTTTCTATGGGCAGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD187155             [                                                                                                                                                         TGTGTGTTTGGTTTTTGAATAATTTCTTACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATACCAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTCTCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCGAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD088835             [                                                                                                                                                                                                                                                                                                                      TACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTGCATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACCCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACGTCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTTCTTGTTCTTTTACCAAACAC                                                                                                                                                                                                                                                                           ]
[-] EMBL CD088723             [                                                                                                                                                                                                                                                                                                                         TGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACAC                                                                                                                                                                                                                                                                           ]
[-] EMBL CD088734             [                                                                                                                                                                                                                                                                                                                         TGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCACCCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTTATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACCCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATCCTTTGTCTCCTCTGCTATTGATTATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACAC                                                                                                                                                                                                                                                                           ]
[-] EMBL CD196389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCAAATCACACATGCTAACCTTGGTGTTGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATGATTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCATTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACTTTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACAAAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATACGGCGTTTAGTACGTATTATTATTGTTCATTTTTGCTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCA                                                                                                                                                                                                                                                                                ]
[+] EMBL CD193900             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACGTATTATTATTGTTCATCTTTGTTAACGTTATTTATCATCATCAGTCTACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTGTGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTGGNGATATTCTTTTTACATAAATTGACGATTATGGTGGTATTACGATTNCGGANANTCNTNNCATTTCTCTCATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG]




>consensus_10048#0
CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCA
ACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGC
AGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCT
TACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATAC
CAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTC
TCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCAC
CCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTT
ATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGT
TGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTA
TTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCA
TTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACT
TTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACA
AAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATA
CGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTC
TACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCG
ATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTG
TGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTG
GNGATATTCTTTTTACATAAATTGACGATTATGGTGGTATTACGATTNCGGANANTCNTN
NCATTTCTCTCATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG

consensusID : consensus_10048#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 280
fasta sequence

                              [TTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTCGCTCCCTGTGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTATCTGTTTGGCGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCGGATAATTCTTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTGTAAGTATGGATAAAATATAAATCATCTTTGAACCCAGTAA]

[+] EMBL CD078605             [TTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTCGCTCCCTGTGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTATCTGTTTGGCGATATTCTTTTTACAATAAATTGACGATTATGGGGGTATTAACGATTTCGGATAATTCTTCATTTTCTCT                                                                                ]
[-] EMBL CD073069             [ TGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTTCATCTCTCGCTCCCTGTGTGTGTGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGTGTATGTTTATCTGTTTGGTAATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCGGATAATTCTTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTGTAAGTATGGATAAAATATAAATCATCT             ]
[-] EMBL CD077176             [                                                                                                                    TTTATCTGTTTGGGGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATCAACAATTTCGGATAATTCTTCATTTTCTCTTCAAATTTTTGTCAAATGTGTTAACGCTTTTGTGTGTGTGTAAGTATGGATAAAATATAAATCGTCTTTGAACCCAGTAA]




>consensus_10048#1
TTGTTGCGATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTC
GCTCCCTGTGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTA
TCTGTTTGGCGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCG
GATAATTCTTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTG
TAAGTATGGATAAAATATAAATCATCTTTGAACCCAGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10048#0      CGTGCTTCAGTCTCCTTCCTTTNTAATTCGTTAATTTCTTGTTTCTTATCTGATTTCTCA 60
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      ACATACCATGTTTTACAATTCAATGGGAAGGGAGCTACTTCGATTGAAATTTCTATGGGC 120
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      AGTGATGTTATATTGTTATCACTGTCTTTTTCATGTGTGTTTGGTTTTTGAATAATTTCT 180
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TACTGGATCATTACTACTCTGTGATGAGCACGGGAATTTTGAGCGATACAATTGTTATAC 240
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CAAAGTAAAATATACTAAACATATTAAAGAAACTGTTTCAAGGAAATGAAATTGCATTTC 300
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TCCCTCCCTCTACTGTTCATCGTCATCAACGCTAGACATCTAAAAACAATATCATATCAC 360
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CCGGTCCACATATTAGGCTCCTATTGTTATCCAATCTACATCACAGTGTTTAGTTCTTTT 420
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      ATCTCCGTCCTGTTCCCGCCCCCATTCTCCAACTCAAATCACACATGCTAACCTTGGTGT 480
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TGATTGTAGACACCAGCTAATTGTCAGTGATATATTCTTTGTCTCCTCTGCTATTGATTA 540
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TTTCATAAATGTTTACTTGCCATTTTGTTATATTCTTTCCAATAAGGGAATTTATTCCCA 600
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TTTCTACATTTATGTGTAACATCACTCAGTTTTTTTATTAAAGAAATACAAAATAAGACT 660
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TTTCAAGTCCATCATATTTACCGCCGCCACTCCTCTTACTCATCTACTTGTGTTAACACA 720
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      AAAAGGGAAAAAATTCTAATTCTCGAAAAAATATACAGGTAGGCAAAATGGTCTGGAATA 780
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      CGGCGTTTAGTACGTATTATTATTGTTCATTTTTGTTAACGTTATTTATCATCATCAGTC 840
consensus_10048#1      ------------------------------------------------------------
                                                                                   

consensus_10048#0      TACTTGTTCTTTTACCAAACACTCTACTCTTCTTGCCTTTTTTATTCACTAATTGTTGCG 900
consensus_10048#1      ----------------------------------------------------TTGTTGCG 8
                                                                           ********

consensus_10048#0      ATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGTCTGTTCTCCATCTCTCGCTCCCTG 960
consensus_10048#1      ATTCCGCGGTAGTTTTCCTCAAACTTTATTTGTTGGCTGTTCTTCATCTCTCGCTCCCTG 68
                       *********************************** ******* ****************

consensus_10048#0      TGTGTGTGTGTGTGTGCGTATGCATACTTTCGCGCACATTTGTGTATGTTTATCGGTGTG 1020
consensus_10048#1      TGTGTGGGTGTGTGTGCGTATGCGTACTTTCGCGCACATTTGGGTATGTTTATCTGTTTG 128
                       ****** **************** ****************** *********** ** **

consensus_10048#0      GNGATATTCTTTTTACA-TAAATTGACGATTATGGTGGTATTA-CGATTNCGGANANTCN 1078
consensus_10048#1      GCGATATTCTTTTTACAATAAATTGACGATTATGGTGGTATTAACGATTTCGGATAATTC 188
                       * *************** ************************* ***** **** * *  

consensus_10048#0      TNNCATTTCTCT-CATATTTTTGNCAAATGTNGTAATGCTTTTTGGTGACTG-------- 1129
consensus_10048#1      TTCATTTTCTCTTCATATTTTTGTCAAATGTGTTAATGCTTTTGTGTGTGTGTAAGTATG 248
                       *    ******* ********** *******  **********  ***  **        

consensus_10048#0      --------------------------------
consensus_10048#1      GATAAAATATAAATCATCTTTGAACCCAGTAA 280