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Schistosoma mansoni
cluster # 10051 cluster # 10051       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10051#0 length = 959 sequences # 12  
consensus_10051#1 length = 398 sequences # 1  

consensusID : consensus_10051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 959
fasta sequence
                              [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA-AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT]

[+] EMBL CD169555             [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAAT                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD169634             [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCACCATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAAT                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD159622             [                                                                                    ATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATCTCTAAATCCGTCAATAAAGCTCACTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAAATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD140334             [                                                                                                                                                                                                          TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGAT                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD140443             [                                                                                                                                                                                                          TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATACATCAAACAGAAAGTCTAATACAA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD140467             [                                                                                                                                                                                                          TTGGGTGTTACTCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATCTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCCAACAGAAAGTCTAATACAAAAC                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD140418             [                                                                                                                                                                                                          TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACA                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD196895             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAGATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATACATATTCTACTGTATCCTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA                                ]
[-] EMBL CD196349             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTC      CTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA                                ]
[-] EMBL CD196664             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAAGAAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTGACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA                                ]
[-] EMBL CD196534             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCCCAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA                                ]
[+] EMBL CD196436             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTACATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT]


>consensus_10051#0 ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCA AAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGAC TGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACA ATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATT TCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAAT CTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAG TACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTT GGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAAT TGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAA TTCAAATATTAAAAAAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAG AAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTAC TACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCA AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA GAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT GACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT



consensusID : consensus_10051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence
                              [AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAAGAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTATTACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA]

[-] EMBL CD196513             [AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAAGAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTATTACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA]


>consensus_10051#1 AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAA GAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTAT TACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGA ATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCA AACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTC ATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACT CTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10051#0      ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCA 60
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      AAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGAC 120
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      TGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACA 180
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      ATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATT 240
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      TCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAAT 300
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      CTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAG 360
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      TACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTT 420
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      GGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAAT 480
consensus_10051#1      ------------------------------------------------------------
                                                                                   

consensus_10051#0      TGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAA 540
consensus_10051#1      --------------------AAAAATAATGATAGAGA-CAATAAAACATCTGCAATACGA 39
                                           **    ** ****  *  ** * ***  *    ***   *

consensus_10051#0      TTCAAATATTAAAAAAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAG 600
consensus_10051#1      C---AACAACAAGAAGAACATGAAGAAACCAT---------TTGAACAAAAATGAATCGG 87
                           ** *  ** ** * *    *  *  ***          **   * * ** ** * *

consensus_10051#0      AAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTAC 660
consensus_10051#1      ATCATC--ATGAATAAAGACAAAGTTCA--------AGC-----CTATTACTACTACCCT 132
                       *   **  **  * ** * * *  ** *        ***     *** * ** * **   

consensus_10051#0      TACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCA 720
consensus_10051#1      AACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCT 192
                        ************* ** ***************************************** 

consensus_10051#0      AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA 780
consensus_10051#1      AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA 252
                       ************************************************************

consensus_10051#0      GAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA 840
consensus_10051#1      GAAATCAAAA-TGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA 311
                       ********** *************************************************

consensus_10051#0      TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT 900
consensus_10051#1      TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT 371
                       ************************************************************

consensus_10051#0      GACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT 959
consensus_10051#1      GACAGTTGTTGTAAAACCAAGAAGTCA-------------------------------- 398
                       ***************************                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)