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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 959 fasta sequence
[ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA-AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT]
[+] EMBL CD169555 [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAAT ]
[+] EMBL CD169634 [ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCAAAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCACCATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAAT ]
[+] EMBL CD159622 [ ATATAAAGAACAATTAGACTGCTATAAAGAGACGACTGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACAATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATCTCTAAATCCGTCAATAAAGCTCACTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAAATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTC ]
[+] EMBL CD140334 [ TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGAT ]
[+] EMBL CD140443 [ TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATACATCAAACAGAAAGTCTAATACAA ]
[+] EMBL CD140467 [ TTGGGTGTTACTCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATCTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCCAACAGAAAGTCTAATACAAAAC ]
[+] EMBL CD140418 [ TTGGGTGTTAATCAATCACGATTGACCGCTCCAACATTTCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAATCTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAGTACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTTGGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCCAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACA ]
[-] EMBL CD196895 [ ATCAATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAGATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATACATATTCTACTGTATCCTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ]
[-] EMBL CD196349 [ ATTGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTC CTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ]
[-] EMBL CD196664 [ CCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAATTCAAATATTAAAAGAAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTGACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ]
[-] EMBL CD196534 [ TCAGTTAAATTTACCGAATCTAATTCAAATATTAAAA AAATCGACCAAGATCCATGTGTTTTGCCTGTGGATATATCAAACAGAAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTACTACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCAAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCCCAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA ]
[+] EMBL CD196436 [ ATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTACATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT]
consensusID : consensus_10051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence
[AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAAGAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTATTACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA]
[-] EMBL CD196513 [AAAAATAATGATAGAGACAATAAAACATCTGCAATACGACAACAACAAGAAGAACATGAAGAAACCATTTGAACAAAAATGAATCGGATCATCATGAATAAAGACAAAGTTCAAGCCTATTACTACTACCCTAACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCTAAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCAGAAATCAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGATAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTATGACAGTTGTTGTAAAACCAAGAAGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10051#0 ATTAAAACAAAATCAGGTTTATTCTTTAGAACAACTGCAATATCATGAAGAACTGATTCA 60
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 AAAACAGTTTACCCAGTTAAATAAATATAAAGAACAATTAGACTGCTATAAAGAGACGAC 120
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 TGCGAGTCTGGAAAGTTACATTTTGGAATTACAAGTTAAGTTAACACTTATTCATGAACA 180
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 ATATGACCAAGAGTTAAAGCGTTTGGGTGTTAATCAATCACGATTGACCGCTCCAACATT 240
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 TCGTAATATTCCAAATCGATTTCAACAAATACATGATATCAATGAAAAACCTTCAAAAAT 300
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 CTCATCATTTCTAAATCCGTCAATAAAGCTCATTCATAATGCTGCTTGCGCTAGTGCTAG 360
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 TACCAGCTATCAAATGCCATCAATCTTATCAGTAGACCAAGGTGTTGATGCATTAAGCTT 420
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 GGAGGATTCTTCAAATCCTGACGTAGATAGCAACAATAATCACTCAACATCAACATCAAT 480
consensus_10051#1 ------------------------------------------------------------
consensus_10051#0 TGTTGAGCATATTCCCAGTGAATCGAAACGATATCGTTCAGTTAAATTTACCGAATCTAA 540
consensus_10051#1 --------------------AAAAATAATGATAGAGA-CAATAAAACATCTGCAATACGA 39
** ** **** * ** * *** * *** *
consensus_10051#0 TTCAAATATTAAAAAAATCGACCAAGATTCATGTGTTTTGCCTGTGGATATATCAAACAG 600
consensus_10051#1 C---AACAACAAGAAGAACATGAAGAAACCAT---------TTGAACAAAAATGAATCGG 87
** * ** ** * * * * *** ** * * ** ** * *
consensus_10051#0 AAAGTCTAATACAAAACGTCTACCTTTACCCATAAGAGCACGTTCTAATTCTCCAACTAC 660
consensus_10051#1 ATCATC--ATGAATAAAGACAAAGTTCA--------AGC-----CTATTACTACTACCCT 132
* ** ** * ** * * * ** * *** *** * ** * **
consensus_10051#0 TACTACTACTACTACTAATAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCA 720
consensus_10051#1 AACTACTACTACTAATAGTAGTAGTAGTTATCCTAGTTCAATAAGTGAATCATCTCAGCT 192
************* ** *****************************************
consensus_10051#0 AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA 780
consensus_10051#1 AAAATATATTAAATCAAAGAGTCCATTAAAATCAAATAGTTCCGGTCAAACATTTCATCA 252
************************************************************
consensus_10051#0 GAAATCAAAAATGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA 840
consensus_10051#1 GAAATCAAAA-TGCTTGTTAGCGTTCAAGAAATACCGTCTGAACGTTTCATCCTGCCGGA 311
********** *************************************************
consensus_10051#0 TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT 900
consensus_10051#1 TAATTCATATTCTACTGTATCTTTTCCTAATAATAGTTCACCAAAAACTCTCGACAGTAT 371
************************************************************
consensus_10051#0 GACAGTTGTTGTAAAACCAAGAAGTCATAGCTTATTCTCTTGTGACGTCCCGCATATAT 959
consensus_10051#1 GACAGTTGTTGTAAAACCAAGAAGTCA-------------------------------- 398
***************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||