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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10055#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 542 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAACAATCGAATTTCAAATGATCACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGCGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT-GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG-GGGTGGTATTCCTGCTGCAGCCCCAA-AT-AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC-CAGCCATTTTTGGT-AATATTCC-TTTACATTATCTTTGTGGTTTCTACC--ACCGCAATGTGTC-TTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACCTTACAGGTATCGATAAGTCAAAACCTCCGTG]
[+] EMBL AI395181 [TTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAACAATCGAATTTCAAATGATCACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGCGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGG ATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGGCTTGTTCTTCTCAGCCATTTTTTGTGAATATTCCTTTTACACTACCCTTGTGGGTTCTACCAAACGGCACTGTGTCTTTTCTCACAGATGGAGAATCATGAGTTTAGTAGGTATCACAGTAGTCAC ATAGTACTTCGG ATACTGGACCTTACAGGTATCGATAAGTCAAAACCTCCGTG]
[+] EMBL CD114452 [ TCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTG ]
[+] EMBL CD194787 [ GTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTG ]
[+] EMBL CD133529 [ CGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCACAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCGTACTTTACCTTACAGGTATCG ]
[-] EMBL CD133274 [ GGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAGCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGCGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATTTAATAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTG ]
[+] EMBL CD194771 [ TCTGGGTGGAATGATCATGCCCTGAGGAGGAACTAATGGGAGGGGTGGCCTGAAACCAATTAGGAACACCGATCATAAGATGATAGCGAGGGGGGTAACCAATCCCAGGAGGGTGGTATTCCTGCTGCAGCCCCGA AT ACTGGTGGTGGCATTTTACCTTGCTTGTATGCTACAAATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAA ]
[-] EMBL CD062919 [ GGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACTCCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAAGAT AGTGGTGGTGGCATTTTACCatag ]
[-] EMBL CD062915 [ GGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACCCCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCGCAGG GGGTGGTATTCCTGGTGCAGCCCCAA ATGAGTGG ]
[+] EMBL CD095094 [ GAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAA ]
[+] EMBL CD194614 [ ATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTT GGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGG GGGTGGTATTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAA ]
[+] EMBL CD097588 [ TTCCTGCTGCAGCCCCAA AT AGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTC CAGCCATTTTTGGT AATATTCC TTTACATTATCTTTGTGGTTTCTACC ACCGCAATGTGTC TTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACCTTACAGGTATC ]
consensusID : consensus_10055#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[TTTCCCAAGAAAAAAACCTTCGAAAAACAACGATTTCAAAGAACCCCTATTTTTTTTTTATGGCCTACTAAAACGATCATTTTTGATCATGTCACGCGGTGTACATATATTTCGGGGTACTCAACTCCTGGTGAGGCCACCGGATTTCCGTCTGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGTCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTAATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACTTACAGGTATCGAATAAGTTCAAAACATGCGCAACAGACTTCAAAAT]
[-] EMBL AW146509 [TTTCCCAAGAAAAAAACCTTCGAAAAACAACGATTTCAAAGAACCCCTATTTTTTTTTTATGGCCTACTAAAACGATCATTTTTGATCATGTCACGCGGTGTACATATATTTCGGGGTACTCAACTCCTGGTGAGGCCACCGGATTTCCGTCTGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGTCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTAATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGGAGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACTTACAGGTATCGAATAAGTTCAAAACATGCGCAACAGACTTCAAAAT]
consensusID : consensus_10055#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[TTTTCAGAATAATTACAGAAAGAATTCTTTGAAGAATGCAAATAAGAGAAAACGCAACACTTCTATAATTGTGTGGCGACATTTACACGTTTTACCAAGAAAAATAACGCTTTCGAAAAACAATTGAATTTCAAATGATTACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGTGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTTGGATCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGAAATATTCCTTTACATT]
[+] EMBL CD132893 [TTTTCAGAATAATTACAGAAAGAATTCTTTGAAGAATGCAAATAAGAGAAAACGCAACACTTCTATAATTGTGTGGCGACATTTACACGTTTTACCAAGAAAAATAACGCTTTCGAAAAACAATTGAATTTCAAATGATTACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCATTATTTAATCATGTCACTGTGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTGAGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAGGGGTGGTCTGAAACCAGTTGGATCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAGCCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTTGTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGAAATATTCCTTTACATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10055#0 ------------------------------------------------------------
consensus_10055#1 ------------------------------------------------------------
consensus_10055#2 TTTTCAGAATAATTACAGAAAGAATTCTTTGAAGAATGCAAATAAGAGAAAACGCAACAC 60
consensus_10055#0 -------------------------TTTTTTTTTTTTTTTTTTTTT---TTTTCGAAAAA 32
consensus_10055#1 ------------------------------TTTCCCAAGAAAAAAA---CCTTCGAAAAA 27
consensus_10055#2 TTCTATAATTGTGTGGCGACATTTACACGTTTTACCAAGAAAAATAACGCTTTCGAAAAA 120
*** *********
consensus_10055#0 CAATCGAATTTCAAATGATCACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCAT 92
consensus_10055#1 CAAC--GATTTCAAA-GAACCCCTATTTTTTTTTTATGG---CCTACTAAAA-CGATCAT 80
consensus_10055#2 CAATTGAATTTCAAATGATTACATAGTTTTTGTTTATAGTGACATACTAAAAACGATCAT 180
*** ******** ** * ** ***** ***** * * ******** *******
consensus_10055#0 TATTTAATCATGTCACTGCGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTG 152
consensus_10055#1 T-TTTGATCATGTCAC-GCGGTG-TACA-TATATTTCGGGG-TACT-CAACTCCTGGT-G 133
consensus_10055#2 TATTTAATCATGTCACTGTGGTGGTACAGTGTATGTCGGGGGTACTGCAACTCCTGGTTG 240
* *** ********** * **** **** * *** ****** **** *********** *
consensus_10055#0 AGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAG 212
consensus_10055#1 AGGCCACCGGATTTCCG-TCTGG-TGGAATGATCATGCCCTGTGGAGGAACTAATGGGAG 191
consensus_10055#2 AGGCCACGGGATTTGCGGTCTGGGTGGAATGATCATGCCCTGTGGAGGAACTAATGGGAG 300
******* ****** ** ***** ************************************
consensus_10055#0 GGGTGGTCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAG 272
consensus_10055#1 GGGTG-TCTGAAACCAGTTGGAACACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAG 250
consensus_10055#2 GGGTGGTCTGAAACCAGTTGGATCACCGATCATAGGAGGATAGCGAGGGGGGTAACCAAG 360
***** **************** *************************************
consensus_10055#0 CCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTT 332
consensus_10055#1 CCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTT 310
consensus_10055#2 CCCAGGGGGTGGTATTCCTGCTGCAGCCCCAAATAGTGGTGGTGGCATTTTACCTTGCTT 420
************************************************************
consensus_10055#0 GTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTA 392
consensus_10055#1 GTATGCTTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGTA 370
consensus_10055#2 GTATGCCTCAGATGTGTGATCTACTAATCTTTGGACTTGTTCTTCCAGCCATTTTTGGAA 480
****** *************************************************** *
consensus_10055#0 ATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGG 452
consensus_10055#1 ATATTCCTTTACATTATCTTTGTGGTTTCTACCACCGCAATGTGTCTTTCTCACAGATGG 430
consensus_10055#2 ATATTCCTTTACATT--------------------------------------------- 495
***************
consensus_10055#0 AGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGACCT 512
consensus_10055#1 AGAATCATGAGTTAAGTAGGTATCACAGTAGTCACAATAGTACTTCGGCATACTTGAC-T 489
consensus_10055#2 ------------------------------------------------------------
consensus_10055#0 TACAGGTATCGA-TAAGT-CAAAACCTCCGTG-------------- 542
consensus_10055#1 TACAGGTATCGAATAAGTTCAAAACATGCGCAACAGACTTCAAAAT 535
consensus_10055#2 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||