cluster # 10057

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Schistosoma mansoni
cluster # 10057 cluster # 10057 Sequences # 13 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10057#0 length = 741 sequences # 9
consensus_10057#1 length = 319 sequences # 1

consensus_10057#2 length = 234 sequences # 1
consensus_10057#3 length = 176 sequences # 1
consensus_10057#4 length = 172 sequences # 1

consensusID : consensus_10057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 741
fasta sequence

                              [CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT--ACAAAAGTTCATT-ACGGTCATGGGAGAAGACCT-AAAAAAC-AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG-AATTTGGCCTATTTAAAAAAAAAAAAAATA]

[+] EMBL CD077784             [CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATTCTTCATTTGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD078023             [                        CTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAAACACGT GTTGCAACATTAACTGACTGNTATGGACGAGTTCT                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD079378             [                             TGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT  ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTANAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAANATANACTCCAG AATT                          ]
[-] EMBL CD073655             [                                                                          TTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT  ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AATTT                         ]
[-] EMBL SMAA28916            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGTTTGAATATCTC GGACTAAAGATGATCTCTTTGACGSATGATACACAAAAGTCCATTCACGGTCATGGGAGAAGACCTAAAAAAACAAACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAAT AACCCCAGCAAT                           ]
[+] EMBL SMAA28940            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT  ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AATT                          ]
[+] EMBL SMAA28933            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT  ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCATTCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AATT                          ]
[+] EMBL SMAA28918            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AATATCTCGGGACTAAAGATGATCTCTTTGACGGATGAT  ACAAAAGTTCATT ACGGTCATGGGAGAAGACCT AAAAAAC AACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAG AAT                           ]
[-] EMBL AI394955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTATGACGCATGAT  ACAAAATTTCATT ACTGTCATGTGAGAAGACCT AAAAAAC AACTTAGGATCTAAAAGGAACATTTATATCAATCTTGACTTAATCATGGTAGTGTGAGTGTACATAAAATAAACTCCAG AATTTGGCCTATTTAAAAAAAAAAAAAATA]




>consensus_10057#0
CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTT
GTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACACTTCTAATTTGTT
CCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGA
CTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTT
GGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTA
CGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGA
CTGTAATGGACGAGTTCTGAATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCG
TAAAATGTCTACTGTTGCTTTTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAA
GCTTGGGATTGGGGCTGTGCGTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGT
GCTTTCAGGTTTGAATATCTCGGGACTAAAGATGATCTCTTTGACGGATGATACAAAAGT
TCATTACGGTCATGGGAGAAGACCTAAAAAACAACGTAGGATTTAAAAGGAACATTTATA
TCAATCTTGACCTAATCATGGTAGTGGGAGTGTACATAAAATAAACTCCAGAATTTGGCC
TATTTAAAAAAAAAAAAAATA

consensusID : consensus_10057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [GGCCAGAATTCGTCTCGAGGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAAC]

[+] EMBL CD077778             [GGCCAGAATTCGTCTCGAGGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATTTGCTCTCAAGAAGAAAC]




>consensus_10057#1
GGCCAGAATTCGTCTCGAGGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAA
ATAGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTG
GGCGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTC
TTTAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTAC
AGAGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCA
TTTGCTCTCAAGAAGAAAC

consensusID : consensus_10057#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGATGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAACAACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAGTGTCCATAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN]

[+] EMBL SM371                [ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGATGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAACAACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAGTGTCCATAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN]




>consensus_10057#2
ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGA
TGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAAC
AACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAG
TGTCCATAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN

consensusID : consensus_10057#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 176
fasta sequence

                              [TTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACATTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA]

[+] EMBL CD148169             [TTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACATTTCTAATTTGTTCCAGAATGTGTTTCGCTGGGCGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA]




>consensus_10057#3
TTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGC
TCTTTGAAGCTTTTAAAAATAGTTATGATATGCTCGAAGCACATTTCTAATTTGTTCCAG
AATGTGTTTCGCTGGGCGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA

consensusID : consensus_10057#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [TTATTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAAATGTGTTTCGCTGGGCGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA]

[+] EMBL CD097431             [TTATTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTGTGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAAATGTGTTTCGCTGGGCGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA]




>consensus_10057#4
TTATTCGCGCAAGATATAAATGTCTTGCTGAAGGACACTTGCCTGTCGATCGCGCAGTTG
TGCTCTTTGAAGCTTTTAAAAATAGTAGGTTATGATATGCTCGAAGCACACTTCTAAATG
TGTTTCGCTGGGCGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10057#3      --------------------------TTCGCGCAAGATATAAAT---GTCTTGCTGAAGG 31
consensus_10057#4      -----------------------TTATTCGCGCAAGATATAAAT---GTCTTGCTGAAGG 34
consensus_10057#1      -----------------------------------GGCCAGAAT----TCGTCTCGAGG- 20
consensus_10057#0      -------------------------CGCGGCCAAAAATTCGGTTCGAGGCTTGCTGAAGG 35
consensus_10057#2      ATGGGTTAGGGTCATGTTGGCTGCCTGTGCTTTCAGGTTTGAATATCTCGGNANTAAAGA 60
                                                                  *            * * 

consensus_10057#3      ACACTTGCCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 80
consensus_10057#4      ACACTTGCCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 83
consensus_10057#1      -------CCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 62
consensus_10057#0      ACACTTGCCTGTCG-ATCGCGCAG-------TTGTGCTCTTTG---AAGCTTTTAAAAAT 84
consensus_10057#2      TGANCTCTCAGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAAGACCTAAAAAAC 120
                               * * ** **    **        **  * ** * *   ***   * ***** 

consensus_10057#3      AGT----TATGATATGCTCGAAGCACATTTCTAATTTGTTCCAGAATGTGTTTCGCTGGG 136
consensus_10057#4      AGTAGGTTATGATATGCTCGAAGCACACTTCTAA-----------ATGTGTTTCGCTGGG 132
consensus_10057#1      AGTAGGTTATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGG 122
consensus_10057#0      AGT----TATGATATGCTCGAAGCACACTTCTAATTTGTTCCAGAATGTGTTTCGCTGGG 140
consensus_10057#2      AACGTTGGATTTTAAAAGGAACATTTATATCANTCTTGCNCCTAANCATGGTAGGGGGAG 180
                       *       **  **      *     *  **                 ** *  *  * *

consensus_10057#3      CGTCCAGTCAGGTGGCTTTCAATAGTACAAATATACCAGA-------------------- 176
consensus_10057#4      CGTCCAGTCGGGTGGTTTTCAATAGTACAAATATACCAGA-------------------- 172
consensus_10057#1      CGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTT 182
consensus_10057#0      CGTCCAGTCAGGTGGTTTTCAATAGTACAAATATACCAGACTTGAAAGCGCCAAGGTCTT 200
consensus_10057#2      TGTCCA-TAANATAANCTCCAGANTTTGNCCTTTTTTANNCCNNNANCCACCCCN----- 234
                        ***** *    *    * **    *     * *   *                      

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      TAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAG 242
consensus_10057#0      TAAGTGCTGTTGCCGAGAAAACCGCACAACCAATTATTTTGGGCCATCATGTAGTTACAG 260
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      AGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATT 302
consensus_10057#0      AGGAATGTTTGACTTCATTAGTGGAAGATAAACAATATTACGAAACCCCCATCCTTCATT 320
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      TGCTCTCAAGAAGAAAC------------------------------------------- 319
consensus_10057#0      TGCTCTCAAGAAGAAACAACGTGGTTGCAACATTAACTGACTGTAATGGACGAGTTCTGA 380
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      ------------------------------------------------------------
consensus_10057#0      ATGGCACTAGTTGTGGTGCCGAAGGTTTCCGGAACGCTCGTAAAATGTCTACTGTTGCTT 440
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      ------------------------------------------------------------
consensus_10057#0      TTCAAACTGTGGGTATCTCCATAGGACTGAAGGCGAAAAAGCTTGGGATTGGGGCTGTGC 500
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      ------------------------------------------------------------
consensus_10057#0      GTGTTGTATTTAATGGGTTAGGGTCATGTAGGCTGCCTGTGCTTTCAGGTTTGAATATCT 560
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      ------------------------------------------------------------
consensus_10057#0      CGGGACTAAAGATGATCTCTTTGACGGATGATACAAAAGTTCATTACGGTCATGGGAGAA 620
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      ------------------------------------------------------------
consensus_10057#0      GACCTAAAAAACAACGTAGGATTTAAAAGGAACATTTATATCAATCTTGACCTAATCATG 680
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      ------------------------------------------------------------
consensus_10057#4      ------------------------------------------------------------
consensus_10057#1      ------------------------------------------------------------
consensus_10057#0      GTAGTGGGAGTGTACATAAAATAAACTCCAGAATTTGGCCTATTTAAAAAAAAAAAAAAT 740
consensus_10057#2      ------------------------------------------------------------
                                                                                   

consensus_10057#3      -
consensus_10057#4      -
consensus_10057#1      -
consensus_10057#0      A 741
consensus_10057#2      -