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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 645 fasta sequence
[AGCCANAATTTTGCACGAGGCACCAATCCGAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC-GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC--G-GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC-AAGTCGGTTTTTTCTATGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD080795 [AGCCANAATTTTGCACGAGGCACCAATCCGAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATACAAAGTCGGT ]
[+] EMBL AI975769 [ GAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTA ]
[+] EMBL CD165348 [ GAATTCGGTAGGGAGTTGCGTGTTTTTGGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGA ]
[+] EMBL CD185404 [ GGTCCTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATCTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC AAGTCGGT ]
[+] EMBL CD131578 [ TGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCCTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTC ]
[-] EMBL AI395054 [ tCCCAAACAAGGGCTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC AAGTCGGTTTTTTCTATGAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI740283 [ TACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGCGGAAAGTCGCTGTCTTCGTGTTTGGGCGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGGACTTATGGAGAAATTAGAAACCAGCGC G GCTGCGGATAAAAACCACTCTAAACATTAGCAATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAATGTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATAC AAGTCGGTT ]
[+] EMBL CD146399 [ GGGCGAACTTGATATACTTCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTT ]
[+] EMBL CD146398 [ GGGCGAACTTGATATACTTCTCATTAGCGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTT ]
[-] EMBL CD072455 [ ACAGCAAGGATGTTATATGCGACATCGC GAAAGTCGCTGTCTTCGTGTTTGAACGGGTTAAAAGCTGATATAGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGAAACCGTCTCCGGCGCTGCGGgctgtg ]
[+] EMBL CD112703 [ ATATGCGACAACGC GAAAGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATGAACTTATGGAGAAATTAGA ]
consensusID : consensus_10060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 249 fasta sequence
[TGCGCATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTATCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTA]
[+] EMBL CD185526 [TGCGCATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTATCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGGGTTGTTATGGTGTA]
[-] EMBL CD185297 [ GCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGCCACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGATAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTATCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10060#0 AGCCANAATTTTGCACGAGGCACCAATCCGAATTCGGTAGGGAGTTGCGTGTTTTTGGTC 60
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 CTTACTGCGTATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGC 120
consensus_10060#1 -----TGCGCATATCTCCAAACATGTCTTCAGGCATTAAACCCTCGGCAAAATGTGAGGC 55
**** **************************************************
consensus_10060#0 CACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGA 180
consensus_10060#1 CACGTATAAAGAGATGAAAATGAACCACTGTTACCGCTATGTCTTGTTTCAAATTATTGA 115
************************************************************
consensus_10060#0 TAATGAAATAAGTGTAATCAAAATTGCCCCCAGAG------------------------- 215
consensus_10060#1 TAATGAAATAAGTGTAATCAAAATTGCCCCCAGAGGTTGTTTTCAATTTAATTTAATTTA 175
***********************************
consensus_10060#0 ---------ATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGG 266
consensus_10060#1 TCCGCTTAGATGAAACTATGTCACAATTTAAAGATGAAGTTTCAAAGTACCAAAACAAGG 235
***************************************************
consensus_10060#0 GTTGTTATGGTGTAGTAGACTACGAATGTGAAGGTGGTAAAGGGGCGAACTTGATATACT 326
consensus_10060#1 GTTGTTATGGTGTA---------------------------------------------- 249
**************
consensus_10060#0 TCTCATTAGTGTCCGATTCTGCACCCCCCACAGCAAGGATGTTATATGCGACAACGCGAA 386
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 AGTCGCTGTCTTCGTGTTTGGACGGGTTAAAAGCTGATATTGAAGCTCACGACATCAATG 446
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 AACTTATGGAGAAATTAGAAACCAGCGCGGCTGCGGATAAAAACCACTCTAAACATTAGC 506
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 AATGTTATAAGACCATATTTTAAGTCTGATACAATGCTGTAAAGTAAAAAAGATTTTAAT 566
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 GTGTATACTGCTTGCTGACTTCACAAATCGTCCTAAAATACAAGTCGGTTTTTTCTATGA 626
consensus_10060#1 ------------------------------------------------------------
consensus_10060#0 AAAAAAAAAAAAAAAAAAA 645
consensus_10060#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||