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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[AACCTCGGTCCCGTGAATCCGGGCGAGGGACATTGTCAGCCGGTCAGTTTTACTGGGGCGGTATCCTCCCAAAGAGTAACGGAGGAGCGCGAAGGTGGGTTCAGCACGGTCGGTAACCGTGTGTCGAGTGCATTGGCATAAACCCGCCTAACTGTGAGACCCACAAGTCGAGCAGATGCGAAAGCAGGCCAAGTGATCCGGCGGTAGAATGTGGAATTGCCGTCGCTCAACGGATAAAAGGTACCTTAGGGATAACAGGCTGATTTCATCCAAGAGTTCATATCGACGATGAAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGAAGGTCCCAAGGGTCCGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGAACGTCGCGAGACAGTTCGGTCCTCTATCCTCTGTGGGCGCAGGAAAATTGCGGGGTTCGGTTCCTAGTACGAGAGGACCGGAATCGACGCACCTCTGGTGCACCGGTTGTTCTGTCAAGAGCATGGCCGGGTAGCTATGTGCGGAAGGGATAAGCGCTGAAAGCATCTA]
[+] EMBL CD088879 [AACCTCGGTCCCGTGAATCCGGGCGAGGGACATTGTCAGCCGGTCAGTTTTACTGGGGCGGTATCCTCCCAAAGAGTAACGGAGGAGCGCGAAGGTGGGTTCAGCACGGTCGGTAACCGTGTGTCGAGTGCATTGGCATAAACCCGCCTAACTGTGAGACCCACAAGTCGAGCAGATGCGAAAGCAGGCCAAGTGATCCGGCGGTAGAATGTGGAATTGCCGTCGCTCAACGGATAAAAGGTACCTTAGGGATAACAGGCTGATTTCATCCAAGAGTTCATATCGACGATGAAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGAAGGTCCCAAGGGTCCGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGAACGTCGCGAGACAGTTCGGTCCTCTATCCTCTGTGGGCGCAGGAAAATTGCGGGGTTCGGTTCCTAGTACGAGAGGACCGGAATCGACGCACCTCTGGTGCACCGGTTGTTCTGTCAAGAGCATGGCCGGGTAGCTATGTGCGGAAGGGATAAGCGCTGAAAGCATCTA]
consensusID : consensus_10063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[AGCTTAGCATTGAGTTCTGGTACTGGATGTGTAGGATAGGTGGGAGACTGAGATATGGTGTCGCTAGGCATCATGGAGTCGACGTTGAAATACCACCCTTCTTGTACTGGAATTCTAACCTAAATAGGGACATTGCTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGGATAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTAGAGTGCAATAGCAAAAGGGTGCTTGACTGTGAGACAAACAAGTCGATCAGGTACGAAAGTAGGATATAGTGATCCGGTGGTATAGTATGGAATAGCCATCGCTCAAAGGATAAAAGGTACTCTGGGGATAACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGG]
[-] EMBL CD087512 [AGCTTAGCATTGAGTTCTGGTACTGGATGTGTAGGATAGGTGGGAGACTGAGATATGGTGTCGCTAGGCATCATGGAGTCGACGTTGAAATACCACCCTTCTTGTACTGGAATTCTAACCTAAATAGGGACATTGCTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGGATAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTAGAGTGCAATAGCAAAAGGGTGCTTGACTGTGAGACAAACAAGTCGATCAGGTACGAAAGTAGGATATAGTGATCCGGTGGTATAGTATGGAATAGCCATCGCTCAAAGGATAAAAGGTACTCTGGGGATAACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGG]
consensusID : consensus_10063#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[TTGACTGGGGTGGTCGCGTCCCAAAGAGTAACGGAGGCTTCCAAAGGTACGTTCAACACGCTTAGTAACCGTGTGTAGAGTGCATTGGCATAAACGTGCTTGACTGTAAGGCAAACAAGCCGAGCAGGGACGAAAGTCGGGCAAAATNATCGGGGGGGGCCGTANGGAAGGGCGGTCGCTCATAGGATAAAAGGTACGCTGGACAACAGGCTGATCTCCCCCAAGAGCTCACACCGACGGGGAGGTTTGGCACATAAGAATAGGCTCGTCACATCCTGGGGGTGGAGAAGGTCCCAAAGGTTGAGCTGTTCGCTCATTAAAGTGGCACGCGAGGTGGGTTCAGAACGTCGCAAGACAGTTCGGTCCCTG]
[-] EMBL CD087728 [TTGACTGGGGTGGTCGCGTCCCAAAGAGTAACGGAGGCTTCCAAAGGTACGTTCAACACGCTTAGTAACCGTGTGTAGAGTGCATTGGCATAAACGTGCTTGACTGTAAGGCAAACAAGCCGAGCAGGGACGAAAGTCGGGCAAAATNATCGGGGGGGGCCGTANGGAAGGGCGGTCGCTCATAGGATAAAAGGTACGCTGGACAACAGGCTGATCTCCCCCAAGAGCTCACACCGACGGGGAGGTTTGGCACATAAGAATAGGCTCGTCACATCCTGGGGGTGGAGAAGGTCCCAAAGGTTGAGCTGTTCGCTCATTAAAGTGGCACGCGAGGTGGGTTCAGAACGTCGCAAGACAGTTCGGTCCCTG]
consensusID : consensus_10063#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 362 fasta sequence
[GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTGGTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAGCTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAAGGAT]
[+] EMBL CD087377 [GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTACGATACGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGG TATTTGGATTCTAAC ]
[+] EMBL CD087465 [GACCCCGTGTACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTANGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAAC ]
[+] EMBL CD087449 [GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGACCCGGTGTCTCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAAC ]
[-] EMBL CD087381 [ ACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGAg ]
[-] EMBL CD087408 [ ACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAGGTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATACCACCCTTTGGTTATTTGGATTCTAACT ]
[+] EMBL CD086812 [ AAATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTGGTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAGCTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAAGGAT]
[-] EMBL CD086788 [ AATACCACCCTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTGGTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAGCTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAAGGAT]
consensusID : consensus_10063#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence
[GCGGTAACGCTAGTTATCGTGGAGCCGACGTTGAAATACCACCCTTCCGTTACTTGTTATCTAACTTGCCTCGGGCAAAGACAGTGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCACGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAACAAGTCGAGCAGGAACGAAAGTTGGATATAGAGATCCGGTGCTTCTGTATGGAATGGGCATCGATCAGAGGATAAAAG]
[+] EMBL CD088225 [GCGGTAACGCTAGTTATCGTGGAGCCGACGTTGAAATACCACCCTTCCGTTACTTGTTATCTAACTTGCCTCGGGCAAAGACAGTGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCACGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAACAAGTCGAGCAGGAACGAAAGTTGGATATAGAGATCCGGTGCTTCTGTATGGAATGGGCATCGATCAGAGGATAAAAG]
consensusID : consensus_10063#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence
[AGTGGGAATCTCGTTAATCCACTTCACTGCCTCGTCATCGAATTATAGCTTGCCTTGAGCGGATACAGGGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCGGGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAAC]
[+] EMBL CD088226 [AGTGGGAATCTCGTTAATCCACTTCACTGCCTCGTCATCGAATTATAGCTTGCCTTGAGCGGATACAGGGCATGATGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCGGGCTTGGTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAAC]
consensusID : consensus_10063#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence
[TTGAAATACTACCCTTTGTTTACTTGGAGCCTAACTTCTACGGAAGGACATTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTA]
[+] EMBL CD123928 [TTGAAATACTACCCTTTGTTTACTTGGAGCCTAACTTCTACGGAAGGACATTGCGTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTGGTAACCGTGCGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10063#3 GACCCCGTGAACCTTTACTATAGCTTAACGTTGAATTCGGGTAACTGATGTGTAGGATAG 60
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 ------------------------------------------------------------
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 ---------------------AGCTTAGCATTGAGTTCTGGTACTGGATGTGTAGGATAG 39
consensus_10063#0 ------------------------------------------------------------
consensus_10063#2 ------------------------------------------------------------
consensus_10063#3 GTGGGAGGCTGTGAGCCGGTGTCGCTAGGCATCGGGGAGCCAACGTTGAAATAC--CACC 118
consensus_10063#6 ---------------------------------------------TTGAAATAC--TACC 13
consensus_10063#4 ---------------GCGGTAACGCTAGTTATCGTGGAGCCGACGTTGAAATAC--CACC 43
consensus_10063#5 --------------------------------AGTGGGAATCTCGTTAATCCACTTCACT 28
consensus_10063#1 GTGGGAGACTGAGATATGGTGTCGCTAGGCATCATGGAGTCGACGTTGAAATAC--CACC 97
consensus_10063#0 ------------------------------------------------------------
consensus_10063#2 ------------------------------------------------------------
consensus_10063#3 CTTTGGTTATTTGGATTCTAACTTGCCTGTGGCGAGGACACCGTTTGGTGGGTAGTTTGA 178
consensus_10063#6 CTTTGTTTACTTGGAGCCTAACTT--CTACGG-AAGGACATTGCGTGGTGGGTAGTTTGA 70
consensus_10063#4 CTTCCGTTACTTGTTATCTAACTTGCCTCGGGCAAAGACAGTGCATGATGGGTAGTTTGA 103
consensus_10063#5 GCCTCGTCA-TCGAATTATAGCTTGCCTTGAGCGGATACAGGGCATGATGGGTAGTTTGA 87
consensus_10063#1 CTTCTTGTACTGGAATTCTAACCT-----AAATAGGGACATTGCTTGGTGGGTAGTTTGA 152
consensus_10063#0 --------AACCTCGGTCCCGTGAATCCGGGCGAGGGACATTGTCAGCCGGTCAGTTTTA 52
consensus_10063#2 --------------------------------------------------------TTGA 4
** *
consensus_10063#3 CTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCCAAAGGTGACCTCAGCACGCTTG 238
consensus_10063#6 CTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTG 130
consensus_10063#4 CTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCACGCTTG 163
consensus_10063#5 CTGGGGTGGTCGCCTCCAAAAAAGTAACGGAGGCTTTCAAAGGTACCCTCCGCGGGCTTG 147
consensus_10063#1 CTGGGGTGGTCGCCTCCAAAAGGATAACGGAGGCTTTCAAAGGTACCCTCAGCACGCTTG 212
consensus_10063#0 CTGGGGCGGTATCCTCCCAAAGAGTAACGGAGGAGCGCGAAGGTGGGTTCAGCACGGTCG 112
consensus_10063#2 CTGGGGTGGTCGCGTCCCAAAGAGTAACGGAGGCTTCCAAAGGTACGTTCAACACGCTTA 64
****** *** * *** *** ********* * ***** ** * * *
consensus_10063#3 GTAACCGTGCGTTGAGTGCAATAGCATAAGGTCGCTTGACAGTGAGACATACAAGTCGAG 298
consensus_10063#6 GTAACCGTGCGTA----------------------------------------------- 143
consensus_10063#4 GTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAACAAGTCGAG 223
consensus_10063#5 GTAACCGTGCATAGAGCGCAATAGTATAAGGGTGCTTGACTGTGAGACAAAC-------- 199
consensus_10063#1 GTAACCGTGCGTAGAGTGCAATAGCAAAAGGGTGCTTGACTGTGAGACAAACAAGTCGAT 272
consensus_10063#0 GTAACCGTGTGTCGAGTGCATTGGCATAAACCCGCCTAACTGTGAGACCCACAAGTCGAG 172
consensus_10063#2 GTAACCGTGTGTAGAGTGCATTGGCATAAACGTGCTTGACTGTAAGGCAAACAAGCCGAG 124
********* *
consensus_10063#3 CTGGATGGAAACATGGGTATAGTGATCCGGCGGTTCTGTATGGAAGGGCCGTCGCTCAAA 358
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 CAGGAACGAAAGTTGGATATAGAGATCCGGTGCTTCTGTATGGAATGGGCATCGATCAGA 283
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 CAGGTACGAAAGTAGGATATAGTGATCCGGTGGTATAGTATGGAATAGCCATCGCTCAAA 332
consensus_10063#0 CAGATGCGAAAG-CAGGCCAAGTGATCCGGCGGTAGAATGTGGAATTGCCGTCGCTCAAC 231
consensus_10063#2 CAGGGACGAAAGTCGGGCAAAATNATCGGGGGGGGCCGTANGGAAGGGCGGTCGCTCATA 184
consensus_10063#3 GGAT-------------------------------------------------------- 362
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 GGATAAAAG--------------------------------------------------- 292
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 GGATAAAAGGTACTCTGGGGATAACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGG 392
consensus_10063#0 GGATAAAAGGTACCTTAGGGATAACAGGCTGATTTCATCCAAGAGTTCATATCGACGATG 291
consensus_10063#2 GGATAAAAGGTACGCT--GGACAACAGGCTGATCTCCCCCAAGAGCTCACACCGACGGGG 242
consensus_10063#3 ------------------------------------------------------------
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 ------------------------------------------------------------
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 AGGTTTGGCACCTCGATGTCGGCTCGTCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTT 452
consensus_10063#0 AAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGAAGGTCCCAAGGGTC 351
consensus_10063#2 AGGTTTGGCACATAAGAATAGGCTCGTCACATCCTGGGGGTGGAGAAGGTCCCAAAGGTT 302
consensus_10063#3 ------------------------------------------------------------
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 ------------------------------------------------------------
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 CGGCTGTTCGCCGATTAAAGTGGCACGCGAGCTGGGTTCAGAACGTCGTGAGACAGTTCG 512
consensus_10063#0 CGGCTGTTCGCCGGTTAAAGCGGCACGCGAGCTGGGTTCAGAACGTCGCGAGACAGTTCG 411
consensus_10063#2 GAGCTGTTCGCTCATTAAAGTGGCACGCGAGGTGGGTTCAGAACGTCGCAAGACAGTTCG 362
consensus_10063#3 ------------------------------------------------------------
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 ------------------------------------------------------------
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 G----------------------------------------------------------- 513
consensus_10063#0 GTCCTCTATCCTCTGTGGGCGCAGGAAAATTGCGGGGTTCGGTTCCTAGTACGAGAGGAC 471
consensus_10063#2 GTCCCTG----------------------------------------------------- 369
consensus_10063#3 ------------------------------------------------------------
consensus_10063#6 ------------------------------------------------------------
consensus_10063#4 ------------------------------------------------------------
consensus_10063#5 ------------------------------------------------------------
consensus_10063#1 ------------------------------------------------------------
consensus_10063#0 CGGAATCGACGCACCTCTGGTGCACCGGTTGTTCTGTCAAGAGCATGGCCGGGTAGCTAT 531
consensus_10063#2 ------------------------------------------------------------
consensus_10063#3 -------------------------------
consensus_10063#6 -------------------------------
consensus_10063#4 -------------------------------
consensus_10063#5 -------------------------------
consensus_10063#1 -------------------------------
consensus_10063#0 GTGCGGAAGGGATAAGCGCTGAAAGCATCTA 562
consensus_10063#2 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||