These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 733 fasta sequence [AGGAGGGTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC-AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG-AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG---TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCATCTTCAGACTGCCAACAGTACTATCTAAATAAAATTGATTTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCATATCACCATGATC] [+] EMBL CD178870 [AGGAGGGTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCA ] [+] EMBL CD178595 [ GTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTtc ] [+] EMBL CD179115 [ AGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAG ] [+] EMBL CD178470 [ AGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAG ] [+] EMBL CD178118 [ AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAG ] [+] EMBL CD179153 [ AGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTGTACTACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACC ] [+] EMBL CD179185 [ AGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAGGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCANATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTANTACTACTACTAGTACTTCTACTACTAAGACCAT ] [-] EMBL CD178444 [ AGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCATCTgc ] [-] EMBL CD178358 [ tcATTCAGAATCTTCCACTTTTGAANATCGTCAAACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCNGCNACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCCAAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGAAACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCATCTca ] [+] EMBL CD196346 [ AAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCAGATTCAGACTGCCAACAGTACTATCTAAATAAAATTGATTTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCATATCACCATGAT ] [+] EMBL CD181692 [ agaAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCAGATTCAGACTGCCAACAGTACTATCTAAATAAAATTGATTTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCATATCACCATGATC] consensusID : consensus_10068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence [AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCATTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAACTTGATAATGGTGGTGTAAGATTTGTAAAAAGACGGCCAGTTAATTGTAAT] [-] EMBL CD178517 [AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCATTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAACTTGATAATGGTGGTGTAAGATTTGTAAAAAGACGGCCAGTTAATTGTAAT] [-] EMBL CD125853 [ CCGTGTGCAAAATGTTACAACAGGCCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGGATAac ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10068#0 AGGAGGGTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAG 60 consensus_10068#1 ------------AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAG 48 ************************************************ consensus_10068#0 ACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAG 120 consensus_10068#1 ACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAG 108 ************************************************************ consensus_10068#0 ATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTC 180 consensus_10068#1 ATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTC 168 ************************************************************ consensus_10068#0 TCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAAT 240 consensus_10068#1 TCATTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAAT 228 ** ********************************************************* consensus_10068#0 CTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGA 300 consensus_10068#1 CTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGA 288 ************************************************************ consensus_10068#0 AAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTT 360 consensus_10068#1 AAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTT 348 ************************************************************ consensus_10068#0 CAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAA 420 consensus_10068#1 CAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAA 408 ************************************************************ consensus_10068#0 TAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAAC 480 consensus_10068#1 TAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAAC 468 ************************************************************ consensus_10068#0 TTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTAT 540 consensus_10068#1 TTGATAATGGTGGTGTAAGATTTGTAAAAAGACGGCCAGTTAATTGTAAT---------- 518 ********************* ** ******** *** consensus_10068#0 CTGTACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTAC 600 consensus_10068#1 ------------------------------------------------------------ consensus_10068#0 TAAGACCATTGGTACCTTCCATCTTCAGACTGCCAACAGTACTATCTAAATAAAATTGAT 660 consensus_10068#1 ------------------------------------------------------------ consensus_10068#0 TTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCA 720 consensus_10068#1 ------------------------------------------------------------ consensus_10068#0 TATCACCATGATC 733 consensus_10068#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||