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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 733 fasta sequence
[AGGAGGGTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC-AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG-AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG---TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCATCTTCAGACTGCCAACAGTACTATCTAAATAAAATTGATTTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCATATCACCATGATC]
[+] EMBL CD178870 [AGGAGGGTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCA ]
[+] EMBL CD178595 [ GTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTtc ]
[+] EMBL CD179115 [ AGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAG ]
[+] EMBL CD178470 [ AGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAG ]
[+] EMBL CD178118 [ AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAG ]
[+] EMBL CD179153 [ AGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTGTACTACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACC ]
[+] EMBL CD179185 [ AGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAGGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCANATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTANTACTACTACTAGTACTTCTACTACTAAGACCAT ]
[-] EMBL CD178444 [ AGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCATCTgc ]
[-] EMBL CD178358 [ tcATTCAGAATCTTCCACTTTTGAANATCGTCAAACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCNGCNACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCCAAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGAAACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCATCTca ]
[+] EMBL CD196346 [ AAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCC AAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCAGATTCAGACTGCCAACAGTACTATCTAAATAAAATTGATTTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCATATCACCATGAT ]
[+] EMBL CD181692 [ agaAGCTGATATTAATAAG AAAAAACTTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTATCTG TACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTACTAAGACCATTGGTACCTTCCAGATTCAGACTGCCAACAGTACTATCTAAATAAAATTGATTTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCATATCACCATGATC]
consensusID : consensus_10068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence
[AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCATTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAACTTGATAATGGTGGTGTAAGATTTGTAAAAAGACGGCCAGTTAATTGTAAT]
[-] EMBL CD178517 [AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAGACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTCTCATTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAATCTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGAAAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTTCAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAATAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAACTTGATAATGGTGGTGTAAGATTTGTAAAAAGACGGCCAGTTAATTGTAAT]
[-] EMBL CD125853 [ CCGTGTGCAAAATGTTACAACAGGCCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAGATAAATGAAATGAGATTATACAAGGATAac ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10068#0 AGGAGGGTGAGAAGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAG 60
consensus_10068#1 ------------AGAAGAAGAAGACATACTGAAGTAACCGTCTGCAAAATGTTACAACAG 48
************************************************
consensus_10068#0 ACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAG 120
consensus_10068#1 ACCACACATATATAATGATAGTTCTGCTTGGATTATAACACATAACGAATAGTATCGGAG 108
************************************************************
consensus_10068#0 ATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTC 180
consensus_10068#1 ATAAATGAAATGAGATTATACAAGAATAGTATCCAGATACTGTGTATAGTTCCCGAGTTC 168
************************************************************
consensus_10068#0 TCTTTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAAT 240
consensus_10068#1 TCATTGGAAGTAACACATACATTGACACTATGACAATAATGATGATGTTTTATTCAGAAT 228
** *********************************************************
consensus_10068#0 CTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGA 300
consensus_10068#1 CTTCCACTTTTGAATATCGTCATACACACACAGGCACACAAATAGAAAGAGAGAAAGGGA 288
************************************************************
consensus_10068#0 AAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTT 360
consensus_10068#1 AAGAAAAGACAGTTAAACTAGTCCATAGTGACTAGTTCATTTAAACACGATTTGTTGTTT 348
************************************************************
consensus_10068#0 CAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAA 420
consensus_10068#1 CAGCACATTTCATTTGTTTTCTATCTGCTACAGCTTTTTCACATAAACGTACAAAATAAA 408
************************************************************
consensus_10068#0 TAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAAC 480
consensus_10068#1 TAAGTACTGCCAAAAAACTTAATAAATAAATAAAATCAGCTGATATTAATAAGAAAAAAC 468
************************************************************
consensus_10068#0 TTGATAATGGTGGTGTAAGATACAAGGCAAATTCACCAGTTAAACCTAAACGATCATTAT 540
consensus_10068#1 TTGATAATGGTGGTGTAAGATTTGTAAAAAGACGGCCAGTTAATTGTAAT---------- 518
********************* ** ******** ***
consensus_10068#0 CTGTACTACTACTACTACTACTACTAATACTACTAATACTACTACTAGTACTTCTACTAC 600
consensus_10068#1 ------------------------------------------------------------
consensus_10068#0 TAAGACCATTGGTACCTTCCATCTTCAGACTGCCAACAGTACTATCTAAATAAAATTGAT 660
consensus_10068#1 ------------------------------------------------------------
consensus_10068#0 TTGAATATTGATCATTTGTTTCTATGAGACCATTTGATAGAAGAACTTTGGTTAAAATCA 720
consensus_10068#1 ------------------------------------------------------------
consensus_10068#0 TATCACCATGATC 733
consensus_10068#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||