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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1523 fasta sequence
[GCAGGTGGTAAATCAGGAAAGTAGATAATGATAATAATAAAGGGAAGAATAAAGGCGTAAACAAAAGAAAAGGAAGTTTTGTAGCTCATAAAACACAAGAAAATTACTACTTTTTACATACAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTGATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTACGTGGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGTCGAGGTTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGTTGAAAAGAAGAACGTTTGACTGGATAATCTTTAANACAANTTGTTTGTATTGACGTCGACAGTGGAGGCAACGGACAATTAGGTGGACTTGCAGTAGTTAGTGGCATTGTATGTTCAGGTGTAGAAAGTGTATGCGAATGACGTTTACAACCACCTGTCATAGTTGATAATAATTTATTTGGGTCGCCGCTACTGCTACTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT-TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGT-TGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTG-ATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC-AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTNTCAACTAGCANATTATCATCTAGACGAGAAGTGACCTGGATAGATCCTGAGTTCATTGCACTNGTGGNAGTGGNAT]
[+] EMBL CD067390 [GCAGGTGGTAAATCAGGAAAGTAGATAATGATAATAATAAAGGGAAGAATAAAGGCGTAAACAAAAGAAAAGGAAGTTTTGTAGCTCATAAAACACAAGAAAATTACTACTTTTTACATACAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTGATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTACGTGGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGACAAGGTTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGT ]
[+] EMBL CD144315 [ AAGAAAATTACTACTTTTTACATACAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTGATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTAGGTGGGTAGTTTTTGACCGTGATTAACAGGATGTTGTTGAATACTTGATGGTGGTGGTCGAGGTTCCGGACCATAATATCGTTCAAC ATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGNTGAAAAGAAGAACGTTTGACTGGATAATCTTTAANACAANTTGTTTGTATTGAC ]
[-] EMBL CD196807 [ TGGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGTCGAGGTTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTCTTTTTCTTCAACTACTGCTGGTTGAAAAGAAGAACGTTTGACTGGATAATCTTTAAAACAATTTGTTGTTATTGACGTCGACAGTGGAGGCAACGGACAATTAGGTGGACTTGCAGTAGTTAGTGGCATTGTATGTTCAGGTGTAGAAAGTGTATGCGAATGACGTTTACAACCACCTGTCATAGTTGATAATAATTTATTTGGGTCGCCGCTACTGCTACTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTC ]
[+] EMBL CD188355 [ ACTGCTACTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAG ]
[-] EMBL CD148275 [ CTATTACTACTACAATTCCATATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTG ]
[-] EMBL CD188263 [ CGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCCATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGT TGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGA ]
[-] EMBL CD179908 [ TTTGGATGTAATCG TTGTTGTNNGTCGCATCTTCAGACAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGATACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTTATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACA ]
[+] EMBL CD096479 [ GGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACTTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGT TGGATTTGAAAAATCATGTGAGTTTAACGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTG ATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTNTCAACTAGCANATTATCATCTAGACGAGAAGTGACCTGGATAGATCCTGAGTTCATTGCACTNGTGGNAGTGGNAT]
[+] EMBL CD096417 [ GGAGTACTAGGATTCAAGTGCATTAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTGTAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGT TGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTG ATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGANACATTTGGTGGGATATTCTCAACTAG ]
[-] EMBL CD145213 [ CTAAGACAACAATCGGAACGTTTTTGTAAGCGTTCCAACTGGCGTCGTTTAACAGAATTAACACCACCTGATTGAGAAGATGGTGTTCCATAGGTAGCACTCTTTAATTTAGCATTAGATTCTTTACTCCCAACTGATGGAATGGATGAATCGACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATACCTGTTGTTGTCTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTCTGTGCATGTTTGCTGAATAGGAGCATTCAATATGTCCAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCTAGATATGTAACTCT ]
consensusID : consensus_10070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 555 fasta sequence
[CAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAAC-TAGCA-AATTATCATCTAGACGAGAAGTGACCTGATTAGATCCCTGATTTCCCACCCTTGCCCAGGGTGACCG]
[-] EMBL CD167821 [CAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAAC TAGCA AATTATCATCTAGACGAGAAGTGACCTGATTAGATCCCTGATTTCCCACCCTTGCCCAGGGTGACCG]
[-] EMBL CD067091 [ ACAGAATTAAAACAAACTGATTGAGAAGATGGTGTTCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGATGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAAC TAGCA AATTATCATCTAGACGAGAAGTGAC ]
[-] EMBL CD167829 [ TAGATTCTTTATTCCCAGCTGATGGAATGGATGAAACAACAGAGGGAGGTTTTAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGTTGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATGATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTGAATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACGTCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCCAGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGGGATATTTTCAACGTAGCATAATTATCATCTAGACGAGAAGTGACCTGATTAGATCCGTGATTTCCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10070#0 GCAGGTGGTAAATCAGGAAAGTAGATAATGATAATAATAAAGGGAAGAATAAAGGCGTAA 60
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 ACAAAAGAAAAGGAAGTTTTGTAGCTCATAAAACACAAGAAAATTACTACTTTTTACATA 120
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 CAGGTGGTTAGTGTATAAACGAATATGTTCATGTGTATGAAAAAAAGAACATATCAAGTG 180
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 ATTGAAATATACACCATAGATATCGTTGAACCTGTACATATTACATTAATGAAATTACGT 240
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 GGGTAGTTTTTGACCGTGATTAACAGGACGTTGTTGAATACTTGATGGTGGTGGTCGAGG 300
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TTCCGGACCATAATATCGTTCAACAATATAATATCGTATTTCAACCTCTGGATAGTTTTC 360
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TTTTTCTTCAACTACTGCTGGTTGAAAAGAAGAACGTTTGACTGGATAATCTTTAANACA 420
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 ANTTGTTTGTATTGACGTCGACAGTGGAGGCAACGGACAATTAGGTGGACTTGCAGTAGT 480
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TAGTGGCATTGTATGTTCAGGTGTAGAAAGTGTATGCGAATGACGTTTACAACCACCTGT 540
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 CATAGTTGATAATAATTTATTTGGGTCGCCGCTACTGCTACTATTACTACTACAATTCCA 600
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TATACGTTCAGGAGCGGTAAATACTAAATGTCCAATATCATTCACATCAACATCATTCCC 660
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 ATTAATGTTGAACTGACTTAGATTTTGGATGTAATCGTTTGTTGTTGTCGCATCTTCAGA 720
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 CAGATCAATGTCCATTAGTGAAGATGAATCAAGATCGGATAATGAATGTGGTTCAGTAGA 780
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TACAACAGGATAGTTTCTAAAGTTAGACTTATTATTATTAGTTTGAGATGTGTTTAATTT 840
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 ATTCTGAATTTGGGGTATGGAACCGTGTACAGTTCCAGGAGTACTAGGATTCAAGTGCAT 900
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TAAACCAGTCGATGAGCGTAAGCCAGCTGGGGGACTAAGAAACCAATCGGAACGTTTTTG 960
consensus_10070#1 ------------------------------------------------------------
consensus_10070#0 TAAGCGTTCCAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGT 1020
consensus_10070#1 ---------CAACTGACGTCGTTTAACAGAATTAAAACAAACTGATTGAGAAGATGGTGT 51
***************************************************
consensus_10070#0 TCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGA 1080
consensus_10070#1 TCCATAGGTTGCACTCTTTAATTTAGCATTAGATTCTTTATTCCCAACTGATGGAATGGA 111
************************************************************
consensus_10070#0 TGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGT 1140
consensus_10070#1 TGAAACAACAGAGGGAGGTTTGAAATTCTTGGATGAATTATCTGAATTCATAACTGTTGT 171
************************************************************
consensus_10070#0 TGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATG 1200
consensus_10070#1 TGTTGGATTTGAAAAATCATGTGAGTTTAATGGATCTAAATTGACTACTGGAGTGGTATG 231
************************************************************
consensus_10070#0 ATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTG 1260
consensus_10070#1 ATGAGAGGTTTTTCCAATAGGTGTCGTAGTAACACATGTACGTTTTTCTGATGTTTGCTG 291
************************************************************
consensus_10070#0 AATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACG 1320
consensus_10070#1 AATAGGAGCATTTAATATGTCAAATCTCCCAGTATCTATTTCAAAAGGTCGATTTTCACG 351
************************************************************
consensus_10070#0 TCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC 1380
consensus_10070#1 TCTTAGAAGAGTAGGTGTTAGCGTAGAGCTTGCCTCTGTATATAAAATGGTCCCATCTCC 411
************************************************************
consensus_10070#0 AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGG 1440
consensus_10070#1 AGATATGTAACTCTCACTCTGTGTGGAACTGATATTCTGAATATATGAAACATTTGGTGG 471
************************************************************
consensus_10070#0 GATATTNTCAACTAGCANATTATCATCTAGACGAGAAGTGACCTGGATAGATCCTGAGTT 1500
consensus_10070#1 GATATTTTCAACTAGCAAATTATCATCTAGACGAGAAGTGACCTGATTAGATCCCTGATT 531
****** ********** *************************** ******* **
consensus_10070#0 CATTGCACTNGTGGNAGTGGNAT- 1523
consensus_10070#1 TCCCACCCTTGCCCAGGGTGACCG 555
* ** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||