These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10077#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1168 fasta sequence [ATTGGTCTAAGCATTTCCGGACGAAATAGTCCCGAATTACCTATTTCCACCCACTTCTTGAGACCAGGATGATAACTAAAAATTTCCATACTCGGTTCAGTATATGGATTATACGCTGGTTTGAATCTCAGTTGCGTAAGTCCCAACTTTGAAAAGAAAGTTCGAATTACACTTTTTAAATGGCCTAAGCTAAGACCAAAGTCAGCAACTAGACCTTCAACTTGATGGAATTCTGCCAAATGAGTGGCGCCCAGATTTTCATTTCGAAACACACGATCAATACTGTAATATTTAGCTGGAGTAAATGGATTCTTTTTAGATAATGCATGGAGCATACGGGCGCTCACTGCTGTTGTATGTGTACGCAACAAATTTTTCTCCGCTTCCTCCATTAGCCATGGTGACTGATAGCCTCGACTACCAAAAGCACCTTGACTATGCACAGTACGAACTTTATCAATGTAACAAGTTTCGACTGTTTTGTTAATATCTGAAATCTCAGGATCTGAAAGGAAAAATGTATCATGTGCATCTCGAGCAGGATGTTGTTGTGGTTGAAAAAGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC-TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTAAAA] [+] EMBL CD161510 [ATTGGTCTAAGCATTTCCGGACGAAATAGTCCCGAATTACCTATTTCCACCCACTTCTTGAGACCAGGATGATAACTAAAAATTTCCATACTCGGTTCAGTATATGGATTATACGCTGGTTTGAATCTCAGTTGCGTAAGTCCCAACTTTGAAAAGAAAGTTCGAATTACACTTTTTAAATGGCCTAAGCTAAGACCAAAGTCAGCAACTAGACCTTCAACTTGATGGAATTCTGCCAAATGAGTGGCGCCCAGATTTTCATTTCGAAACACACGATCAATACTGTAATATTTAGCTGGAGTAAATGGATTCTTTTTAGATAATGCATGGAGCATACGGGCGCTCACTGCTGTTGTATGTGTACGCAACAAATTTTTCTCCGCTTCCTCCATTAGCCATGGTGACTGATAGCCTCGACTACCAAAAGCACCTTGACTATGCACAGTACGAACTTTATCAATGTAACAAGTTTCGACTGTTTTGTTAATATCTGAAATCTCAGGATCTGAAAGGAAAAATGTATCATGTGCATCTCGAGCAGGATGTTGTTGTGGTTGAAAAAGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTG AAACCCCA ] [-] EMBL CD153147 [ TTGCTGTGG TGAAAAGGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACGGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTCATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ] [-] EMBL CD148671 [ AGACTATCGAAATTCCAAAAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGAATGAAGATGTACAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGCGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTAAAA] [-] EMBL CD153065 [ AAACTGCATTCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAGGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAAATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCGTCACCTTCTTCTGTTAACTGTA ] [+] EMBL CD195971 [ TCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGA ] [+] EMBL CD196031 [ TCAACATAATTGTTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGAGAAGCGACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCATGTAGGATGTGTGCTTTCATT ] [-] EMBL CD153317 [ GTTCGTAGGCATTTCTGAAAACGCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTG AAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGCGTAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ] [-] EMBL CD153141 [ CGTAGGCATTTCTGANAACNCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ] [-] EMBL CD153227 [ GCATTTCTGANAACNCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ] [-] EMBL CD148687 [ TTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACACGCAGAAGAGAATGAAGATGTACAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAAGCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACGTTTTCGTACCAAGTAGGATGCGTGCTTTAAGTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTAAAA] [-] EMBL CD153439 [ TGGAAAGCAACTCAGATGATAAATCCGTTTCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGCTTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGAGTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ] [-] EMBL CD152983 [ TTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGC TAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGTATCCCTGATTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAAATCTCATCACCTTCTTCTGTTAACTGTA ] consensusID : consensus_10077#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [CCAAGTAGGATGTGTGCTNTAATTCGGTAACCAGTTTTCGTTTNTCAATTGAGACTNTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGCTAATACCTATTTTAGCGCCTGGGAATATTTTCTAAAAAAAACACTTTGGTGTGGGTGCCCCTTTTGGGTAAGCGCGGTATACTCTGTATTCATGGCTGCCNCTCCTTTTAATTCATCACCTTCTTCTGTTAACTGTA] [-] EMBL CD153215 [CCAAGTAGGATGTGTGCTNTAATTCGGTAACCAGTTTTCGTTTNTCAATTGAGACTNTTCGTTATCTGGTAAGGGACGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACCAAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAAAGGGCTTTGCTAATACCTATTTTAGCGCCTGGGAATATTTTCTAAAAAAAACACTTTGGTGTGGGTGCCCCTTTTGGGTAAGCGCGGTATACTCTGTATTCATGGCTGCCNCTCCTTTTAATTCATCACCTTCTTCTGTTAACTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10077#0 ATTGGTCTAAGCATTTCCGGACGAAATAGTCCCGAATTACCTATTTCCACCCACTTCTTG 60 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 AGACCAGGATGATAACTAAAAATTTCCATACTCGGTTCAGTATATGGATTATACGCTGGT 120 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 TTGAATCTCAGTTGCGTAAGTCCCAACTTTGAAAAGAAAGTTCGAATTACACTTTTTAAA 180 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 TGGCCTAAGCTAAGACCAAAGTCAGCAACTAGACCTTCAACTTGATGGAATTCTGCCAAA 240 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 TGAGTGGCGCCCAGATTTTCATTTCGAAACACACGATCAATACTGTAATATTTAGCTGGA 300 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 GTAAATGGATTCTTTTTAGATAATGCATGGAGCATACGGGCGCTCACTGCTGTTGTATGT 360 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 GTACGCAACAAATTTTTCTCCGCTTCCTCCATTAGCCATGGTGACTGATAGCCTCGACTA 420 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 CCAAAAGCACCTTGACTATGCACAGTACGAACTTTATCAATGTAACAAGTTTCGACTGTT 480 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 TTGTTAATATCTGAAATCTCAGGATCTGAAAGGAAAAATGTATCATGTGCATCTCGAGCA 540 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 GGATGTTGTTGTGGTTGAAAAAGACTATCGAAATTCCAAAAACTGCATTCAACATAATTG 600 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 TTCGTAGGCATTTCTGAAAACCCCATATCACAAAGTATCCTACAGAATTCTGATCGTACA 660 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 CGCAGAAGAGGATGAAGATGTCCAGATGGTAAAGCGGCACCAAGAGAGTAAAAGTTATAA 720 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 GCCTTAAATTTAGCTGTTTGCCATTCTCCACTGGAAAGCAACTCAGATGATAAATCCGTT 780 consensus_10077#1 ------------------------------------------------------------ consensus_10077#0 TCTTCAGATTTTATATTTGTTGAAAATGATGGACCTTTTCGTACCAAGTAGGATGTGTGC 840 consensus_10077#1 -------------------------------------------CCAAGTAGGATGTGTGC 17 ***************** consensus_10077#0 TTTAATTCGGTAACCAGTTTTCGTTTTTTCAATTGAGACTTTTCGTTATCTGGTAAGGGA 900 consensus_10077#1 TNTAATTCGGTAACCAGTTTTCGTTTNT-CAATTGAGACTNTTCGTTATCTGGTAAGGGA 76 * ************************ * *********** ******************* consensus_10077#0 CGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACC 960 consensus_10077#1 CGTCTAGACTCTTTTACATCTGACAACAACTGTTGCACATCATCTTTGACTTCTGGGACC 136 ************************************************************ consensus_10077#0 AAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAA 1020 consensus_10077#1 AAACGATGCAAACAAGGTACACCAGCCTCATTTTTGGTGAGTGCTATCCACTTTGACGAA 196 ************************************************************ consensus_10077#0 AGGGCTTTGCTAATACCTATTTTAGCACCTGGAAATATTTTCAAAATATCACTTTGTGGT 1080 consensus_10077#1 AGGGCTTTGCTAATACCTATTTTAGCGCCTGGGAATATTTTCTAAAAAAAACACTTTGGT 256 ************************** ***** ********* *** * ** * **** consensus_10077#0 ATCCCTGA---TTCTGGGATAGCACGGTATACTCTGTATTCATGGCTGCCACTGTTTAAA 1137 consensus_10077#1 GTGGGTGCCCCTTTTGGGTAAGCGCGGTATACTCTGTATTCATGGCTGCCNCTCCTTTTA 316 * ** ** **** *** ************************** ** ** * consensus_10077#0 ATCTCATCACCTTCTTCTGTTAACTGTAAAA 1168 consensus_10077#1 AT-TCATCACCTTCTTCTGTTAACTGTA--- 343 ** ************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||