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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1380 fasta sequence
[CCAGGCCAAAAATTCGGCACGAGGGTGAATAAAGTTGAAGATGTAATGTCTCTTATTAATGGACATGAAAATTTTAAGAAAACTCTTCCAGCTGCACAAAAAGAATTGAATGATATAATTACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGCTGATTTCATGCGTATTATGAAAACTGTTGATCCACATTGTACTGGTTATGTGACGTTTGATGCGTTCATGCAATTTATGTCACAACAAACAATGGGAGCTGATACAGTTGAACAAATGGTCAATTCATTTAGAACTTTAGCAGGTGATACACCATACATTACAACAGAACAATTGAAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAATGGACCAGGTGTCGCAAATGGTGGCGCTTTGGATTATACCTCATTTGCAGCAAGTCTATACGGTGAATCTGAATTGTAAGAAAATTAGCTGGACCATATATTAGCACAGAGAGATATGTCATTTTTATGTTAAAACAAACATATTTTATGAGTCCGTAGAGTTTGTATTTTCATCATTCGAATATAGATAGATTTAGTTATATATAAATATAAGTATACATTTGCATAAAACACCAAAGTAGTCTAATTCTAAAACAGAAATGTGTTAGAAATCCCCTTTTTGGAGTTGTGAAATAACTTGCATGATTTTGATGAAGTTAACGTTCAGTACATGCACTCGATTTAAAAAAATAAAAACCCA]
[+] EMBL CD079472 [CCAGGCCAAAAATTCGGCACGAGGGTGAATAAAGTTGAAGATGTAATGTCTCTTATTAATGGACATGAAAATTTTAAGAAAACTCTTCCAGCTGCACAAAAAGAATTGAATGATATAATTACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTA ]
[+] EMBL AA559633 [ AGAAAACTCTNCCAGCTGCACAAAAAGAATTGAATGATATAATNACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTGTCATCAGAATTATTAAAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTACNCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCNATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACNTAATCTAGAAACA ]
[+] EMBL CD089970 [ TACTCATTGATTAGTGGAAGAGACGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGC ]
[-] EMBL CD090010 [ ACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACACCAAGAAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTCTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGCT ]
[-] EMBL CD196032 [ AAAATGATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATNTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGA ]
[-] EMBL CD059513 [ ATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGGATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATTGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGA ]
[+] EMBL CD139870 [ AACAAATCAAAAATTATCACTAGAAGATCAACTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGAT ]
[+] EMBL CD139904 [ AACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAAC AATTGAGG ATGTCGTAGATGTTTTA ]
[+] EMBL CD140013 [ AACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATTGAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTA ]
[+] EMBL CD139913 [ AACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATAT AAACGCGGTCAAAATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGgt ]
[-] EMBL CD073742 [ TTAGATCCGTTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGTGAAGCTGATTTCATGCGTATTATGAAAACTGTTGATCCACATTGTACTGGTTATGTGACGTTTGATGCGTTCATGCAATTTATGTCACAACAAACAATGGGAGCTGATACAGTTGAACAAATGGTCAATTCATTTAGAACTTTAGCAGGTGATACACCATACATTACAACAGAACAATTGAAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAATGGACCAGGTGTCGCAAATGGTGGCGCTTTGGATTATACCTCATTTGCAGCAAGTCTATACGGTGAATCTGAATTGTAAGAAAATTAGCTGGACCATATATTAGCACAGAGAGATATGTCATTTTTATGTTAAAACAAACATATTTTATGAGTCCGTAGAGTTTGTATTTTCATCATTCGAATATAGATAGATTTAGTTATATATAAATATAAGTATACATTTGCATAAAACACCAAAGTAGTCTAATTCTAAAACAGAAATGTGTTAGAAATCCCCTTTTTGGAGTTGTGAAATAACTTGCATGATTTTGATGAAGTTAACGTTCAGTACATGCACTCGATTTAAAAAAATAAAAACCCA]
[-] EMBL CD139174 [ CATTACAACAGAACAATTGAAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAATGGACCAGGTGTCGCAAATGGTGGCGCTTTGG ]
consensusID : consensus_10081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence
[GTTATCCCAACACAGAGCAGTGAAAAAACTGATTCAATCGCATATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGG]
[+] EMBL CD126678 [GTTATCCCAACACAGAGCAGTGAAAAAACTGATTCAATCGCATATTTATCATCAGAATTATTAAAAAATCCATACACAATGATTGATGCTCTACATTACAAAGTAGATGGGATGCAATGTACTCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAATGATAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACATAATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTACAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTAGAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATATACAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10081#0 CCAGGCCAAAAATTCGGCACGAGGGTGAATAAAGTTGAAGATGTAATGTCTCTTATTAAT 60
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 GGACATGAAAATTTTAAGAAAACTCTTCCAGCTGCACAAAAAGAATTGAATGATATAATT 120
consensus_10081#1 ------------------------------------------------------GTTATC 6
* **
consensus_10081#0 ACAGAGGCAGAGCAAGTGAAAAAACTGATTCAATCGCATAATTTATCATCAGAATTATTA 180
consensus_10081#1 CCA-ACACAGAGCA-GTGAAAAAACTGATTCAATCGCATA-TTTATCATCAGAATTATTA 63
** * ******* ************************* *******************
consensus_10081#0 AAAAATCCATACACAATGATTGATTGCTCTACATTACAAAGTAGATGGGATGCAATGTAC 240
consensus_10081#1 AAAAATCCATACACAATGATTGAT-GCTCTACATTACAAAGTAGATGGGATGCAATGTAC 122
************************ ***********************************
consensus_10081#0 TCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAAT 300
consensus_10081#1 TCATTGATTAGTGGAAGAGATGATGCATTACATCAAGAACTTGTTAAACAACAAGAAAAT 182
************************************************************
consensus_10081#0 GATAAAGTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACAT 360
consensus_10081#1 GATAA-GTCAATACTCAATTCGCTCAATTAGCCAATCGTTTTGGACCATATTTAGAACAT 241
***** ******************************************************
consensus_10081#0 AATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTA 420
consensus_10081#1 AATCTAGAAACAGTACATTCTATTGTAACAAATCAAAAATTATCACTAGAAGATCAATTA 301
************************************************************
consensus_10081#0 CAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTA 480
consensus_10081#1 CAACGTTTAAATAAAGTTGAAGAAGATTTAGAAGGATGGAAACCAACAATAACTGAATTA 361
************************************************************
consensus_10081#0 GAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATAT 540
consensus_10081#1 GAAAAACTTCATCAAAAACAACAAGAATTTCTGATTACACATAATCCTCATACACGATAT 421
************************************************************
consensus_10081#0 ACAATGGAAACTTTACGTGTTGGATGGGAACAATTGAAAACTAATATAAAACGCGGTCAA 600
consensus_10081#1 ACAATGG----------------------------------------------------- 428
*******
consensus_10081#0 AATGAAATCGAAAATCGTATAACAGCTAATGATTATCGTGGTGTTACGGAACAACAAATT 660
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 GAGGAATGTCGTAGATGTTTTAATCATTTTGATAAACATAGAACACGTCGATTAGATCCG 720
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 TTAGATTTTAGAGCTTGTCTTGTATCACTTGGCTTTACCATACCAAATAGTTCTCAAGGT 780
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 GAAGCTGATTTCATGCGTATTATGAAAACTGTTGATCCACATTGTACTGGTTATGTGACG 840
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 TTTGATGCGTTCATGCAATTTATGTCACAACAAACAATGGGAGCTGATACAGTTGAACAA 900
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 ATGGTCAATTCATTTAGAACTTTAGCAGGTGATACACCATACATTACAACAGAACAATTG 960
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 AAACGTGAATTGGAACCTGAACTGGCTGACTATTGTATTAATCGTATGAAAGCATACAAT 1020
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 GGACCAGGTGTCGCAAATGGTGGCGCTTTGGATTATACCTCATTTGCAGCAAGTCTATAC 1080
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 GGTGAATCTGAATTGTAAGAAAATTAGCTGGACCATATATTAGCACAGAGAGATATGTCA 1140
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 TTTTTATGTTAAAACAAACATATTTTATGAGTCCGTAGAGTTTGTATTTTCATCATTCGA 1200
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 ATATAGATAGATTTAGTTATATATAAATATAAGTATACATTTGCATAAAACACCAAAGTA 1260
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 GTCTAATTCTAAAACAGAAATGTGTTAGAAATCCCCTTTTTGGAGTTGTGAAATAACTTG 1320
consensus_10081#1 ------------------------------------------------------------
consensus_10081#0 CATGATTTTGATGAAGTTAACGTTCAGTACATGCACTCGATTTAAAAAAATAAAAACCCA 1380
consensus_10081#1 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||