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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1115 fasta sequence
[GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCAACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAACCGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD080696 [GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCAACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGA ]
[-] EMBL CD146819 [ AGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGTACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGATTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAA ]
[-] EMBL CD129001 [ TTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACCTAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCGAATTGTACGAAATAAACAAG AACACGAAC ATTTTAGGTGA ]
[+] EMBL CD083791 [ AGAAATGCAAACAATTTTAGGTGATAAATAT ATATTGGTCTGTTTGATTGGAGAATGGGT AATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAA ]
[+] EMBL CD115133 [ AACAACAGCGGTAGTAATAATGCCAATAAGTCGAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGTTCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTACGTTCTCATACTGCGTGTAAACCAACAGATGTAAAGAATGCC ]
[+] EMBL CD142572 [ cgaGAGAGGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGGTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTACAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTA ]
[+] EMBL CD142523 [ cgaGAGAGGGTGTCCATTCCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAA ]
[+] EMBL CD141557 [ CCCAATAACAAATGACATTAAACCGGTTATTGTATGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAGTGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACACCNTTCAGCTATTGAGAAAAATCC ]
[-] EMBL AI976133 [ GGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATCATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGAGAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAACCGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTG ]
[-] EMBL AI395717 [ AATGATT AAACCTTTATTGTAACCGATGACGATATACGTCGACAAG AGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAATTGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTGTCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGTTATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCTTGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCTATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_10090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 452 fasta sequence
[TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAAACGAACAGATGTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCCCTCTTTGCCTCGT]
[-] EMBL CD115128 [TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTCTAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGTTCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAATGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAGACGAACAGATGTAAAGAATACCAATCAAGATACTCCTCATCAGTTATTTTGGAAAAGACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCGTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAGCTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGTCATCTTTGCCTCGT]
[-] EMBL CD115149 [ TGTAAACGATCAGATGTAAAGAATACCAATCAAGTAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGTTATTGATCCGGATACTGGCGAATCTCTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCCCTCCTTGCCTCct]
[-] EMBL CD115090 [ tgAACGGACAGATTTAAAGAATACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGCTATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGATATTTGTGGTTCATTTTGATGATGTAACTGTGATGTATAATCCTGTGAGTTTCTTAGTTATGAGGATAATAAGGGTAATATCATAATGAAAGGTAATTCTAGTCGCTCTTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10090#0 GGCCAANAATTTGGCACGAGGTCAGAATTCAATGTCTGGCCAACAACCACACCACCACCA 60
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ACAACAGGTTTGGCCGTCGTCTTTGCCAACAGGTTGGAGACGTGAAGAATGTATGCGACC 120
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TAATGGATTAGGCACTGGGAAATCAGATGTTTATTATATTAGTCCTCAAAATCAAATTGT 180
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ACGAAATAAACAAGAAATGCAAACAATTTTAGGTGATAAATATGATATTGGTCTGTTTGA 240
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TTGGAGAATGGGTAAATTTGCGGTGAGTAACAACAACATTAATAATAATGCCAATAAGTC 300
consensus_10090#1 ---------------------------TTCAGCCAGCTTTAATTTGAAGGCCAATAGGTC 33
* ** * ***** ** ******* ***
consensus_10090#0 GAAAAGGCTGGAAGAACCAACTGCAGACACGTCATCAGCATCGTCACCAACAGCTAAAGT 360
consensus_10090#1 TAAAAGGGTGTAAGACCCGACGGCAGACGAGTCATCAGCATGGTCGCCGACAGATAAGGT 93
****** ** **** ** ** ****** *********** *** ** **** *** **
consensus_10090#0 TCCGCGTGTAGATAATCAGTGCAGTTTACCAATGAGAAGGTGTCCATTCCCAATAACAAA 420
consensus_10090#1 TCGGCGTGTAGATAATCAGGGCAGTTTACCAATTAGAAGGTGTCCATTCCCAATAACAAA 153
** **************** ************* **************************
consensus_10090#0 TGACATTAAACCGGTTATTGTACGTTCTCATCCTGAGTGTAAACGAACAGATGTAAAGAA 480
consensus_10090#1 TGACATTATCTCGGTTATTGTACGTTCTCATCATGAGTGTAAACGAACAGATGTAAAGAA 213
******** ********************* ***************************
consensus_10090#0 TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC 540
consensus_10090#1 TACCAATCAAGAAACTCCTCATCAGTTATTTTGGGAAAAACGGTTAGCTGATCATGTGGC 273
************************************************************
consensus_10090#0 TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAG 600
consensus_10090#1 TATTGATCCGGATACTGGCGAATCTTTCAAACCCATTTCTTTGCCTAAAGGAATACAGAT 333
***********************************************************
consensus_10090#0 TGCTGGAGTACCAGGTTATCAACCTGCTCAGTTAGTCCATAGTTTAATTCATGCGTTATC 660
consensus_10090#1 ATTTGTGGT---------TCATTTTG------------ATGATGTAAC---TGTGATGT- 368
** ** *** ** ** * *** ** * * *
consensus_10090#0 ATCATCATCCTCTAAGATTTCTCCGATTATTGGTCAAGAGCAACAACCTTCAGCTATTGA 720
consensus_10090#1 ---ATAATCCTGTGAG-TTTCTTAGTTATGAGGATAATAAGGGTAATATC--ATAATGAA 422
** ***** * ** ***** * * ** ** * ** * ** *
consensus_10090#0 GAAAAATCCTTGTGTTGTTATTAATCATTTACAACCAATGATTAAAACATTTATTGTAAC 780
consensus_10090#1 AGGTAATTCTAGTCGCCCTCTTTGCCTCGT------------------------------ 452
*** ** ** * ** * *
consensus_10090#0 CGATGACGATATACGTCGACAAGAAGCTCGTGTCAAAGAACTGCGAAAAAAACTAGAAAT 840
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TGCAAGAAAAAAATTACATCCGCGATATGAAACTGAACGAGAAGGATGAACATATTTGTG 900
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TCTGTTTATCAGTTAGCAAACAGTTGTTTTTTTTTTGTTATTATTAATACCTCTCTTTGT 960
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TATTACCCGATTGTATAAACGGTTATAGTACTGTTCATTTCAGTATTGTTATGTTTTTCT 1020
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 TGTCAGGGTTCTATTTTCGTTTTAAGCCTTTTGTACAAAAAAATAATAAATGTATGTTCT 1080
consensus_10090#1 ------------------------------------------------------------
consensus_10090#0 ATGTGTGCATGTGCATAAAAAAAAAAAAAAAAAAA 1115
consensus_10090#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||