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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10093#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 662 fasta sequence
[ATCGGCACGAGGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTG-GNGTTGGAGAGTTCA]
[+] EMBL CD083424 [ATCGGCACGAGGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGC ]
[+] EMBL CD154628 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTGNNNGTTGGAGAGTTCA]
[+] EMBL CD154651 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTCATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTG GNGCTGGAGAG ]
[+] EMBL CD116065 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTCTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCA ]
[+] EMBL CD154341 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCGTCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAA ]
[+] EMBL CD154485 [ ATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGATCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGCTCCATTACCTAGTAA ]
[+] EMBL CD154365 [ GTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCCGTCCAGCCGATTATGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAACTGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAACCCTGCTATTAAGTCATCACCATCAGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATTGGCTAAACTTTG GGGTTGGAGAG ]
consensusID : consensus_10093#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[GACATCACATCTGAATTGCACTTCACAAAGCCTAGACGTATGCCCAATATAGCTCGTCCAGACCAACTACTTATTTAGGTTAAAGCAGCATCGCTGAATCCTGTCGATTCTATGACTTGTCTCATGGTATATAGGTTAATTAATATGCTGGTGCATCTCGATTCACGGTCGACTATTACTATCGAAGAATATAGGTGTGTATTTGGCATTACCGTGATGCCACGACAGCAGAAAATGTTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCAATTACGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCA]
[-] EMBL CD096127 [GACATCACATCTGAATTGCACTTCACAAAGCCTAGACGTATGCCCAATATAGCTCGTCCAGACCAACTACTTATTTAGGTTAAAGCAGCATCGCTGAATCCTGTCGATTCTATGACTTGTCTCATGGTATATAGGTTAATTAATATGCTGGTGCATCTCGATTCACGGTCGACTATTACTATCGAAGAATATAGGTGTGTATTTGGCATTACCGTGATGCCACGACAGCAGAAAATGTTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCTAACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCTCAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCAATTACGTCGCTCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCA]
consensusID : consensus_10093#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 451 fasta sequence
[TATTCATGAAGATACCGTTTGTTCGATATGTTACTCGCTTGCAGAAAACCTGCAGAGTAAAATTATGCAACTGGTGTGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATC]
[-] EMBL CD062327 [TATTCATGAAGATACCGTTTGTTCGATATGTTACTCGCTTGCAGAAAACCTGCAGAGTAAAATTATGCAACTGGTGAGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATC]
[-] EMBL CD122875 [ TGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACTAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGT ]
[-] EMBL CD122813 [ tgttAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTATTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATATGAATTACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTATATGGTTATGGTTCTTCTAGCTTTCATTCAGTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACCTGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGT ]
[+] EMBL CD191475 [ ACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTT ]
[+] EMBL CD077975 [ AGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTAAGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTGCTTGTCTATGGTTATGGTTCTTCTAGCTTTCATTCATTACGTCGCTTTACATCAAAATATGGTTGTTTTGGCTTACCTGATGCCACGACAGCAGAAAATGCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10093#0 ------------------------------------------------------------
consensus_10093#1 ------------------------------------------------------------
consensus_10093#2 TATTCATGAAGATACCGTTTGTTCGATATGTTACTCGCTTGCAGAAAACCTGCAGAGTAA 60
consensus_10093#0 ------------------------------------------------------------
consensus_10093#1 ------------------------------------------------------------
consensus_10093#2 AATTATGCAACTGGTGTGGAAATACATAGTATAATATGAAGCCAAAACTTCCAAAAACTA 120
consensus_10093#0 --ATCGGCACGAGGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAAT 58
consensus_10093#1 --------------------------------------------GACATCACATCTGAAT 16
consensus_10093#2 TTTCAGCATGGCAGCTGATGAGCTTTTTACCACCTGGTGCAGTAGACATCACATCTGAAT 180
****************
consensus_10093#0 TACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTA 118
consensus_10093#1 TGCACTTCACAAAGCCTAGACGTATGCCCAATATAGCTCGTCCAGACCAACTACTTATTT 76
consensus_10093#2 TACACTTCACAAAGACTAGACGTATGCCCAATATAACTCGTCCAGACCAACTACTTATTA 240
* ************ ******************** ***********************
consensus_10093#0 AGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTG-CTTGTCT-ATGGT-TATGGTT 175
consensus_10093#1 AGGTTAAAGCAGCATCGCTGAATCCTGTCGATTCTATGACTTGTCTCATGGTATATAGGT 136
consensus_10093#2 AGGTTAAAGCAGCATCGTTGAATCCTGTCGATTCTTTG-CTTGTCT-ATGGT-TATGGTT 297
***************** ***************** ** ******* ***** *** * *
consensus_10093#0 CTTCTAGCTTTC------------ATTCATTA-CGTCGCTTTACATCAAA--ATATGGTT 220
consensus_10093#1 TAATTAATATGCTGGTGCATCTCGATTCACGGTCGACTATTACTATCGAAGAATATAGGT 196
consensus_10093#2 CTTCTAGCTTTC------------ATTCATTA-CGTCGCTTTACATCAAA--ATATGGTT 342
** * * ***** ** * ** *** ** **** * *
consensus_10093#0 GT---TTTGGC-TTACC-TGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACC 275
consensus_10093#1 GTGTATTTGGCATTACCGTGATGCCACGACAGCAGAAAATGTTGACTTTCCTTTTACACC 256
consensus_10093#2 GT---TTTGGC-TTACC-TGATGCCACGACAGCAGAAAATGCTGACTTTCCTTTTACACC 397
** ****** ***** *********************** ******************
consensus_10093#0 TGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCT 335
consensus_10093#1 TGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATCCAACCT 316
consensus_10093#2 TGGTCGTGATTTTTCTGGTCAAATAGTTGACATCGGTTCAAAAGTTGCTTTATC------ 451
******************************************************
consensus_10093#0 AACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCT 395
consensus_10093#1 AACTAAGGGAAATAAACTTATTATTGGTACAAATGTGGCCGGTGCTACATGGCCTTTTCT 376
consensus_10093#2 ------------------------------------------------------------
consensus_10093#0 CAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCGATTATGTCGC 455
consensus_10093#1 CAGTTCTACTGGATCTGGTTCATTAGCCGAATATATTGTCTGTCCAGCCAATTACGTCGC 436
consensus_10093#2 ------------------------------------------------------------
consensus_10093#0 TCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCATTAGGATATGCTGGTTTAAC 515
consensus_10093#1 TCCATTACCTAGTAATGTTTCCTTCATATCTGCAGCTGCA-------------------- 476
consensus_10093#2 ------------------------------------------------------------
consensus_10093#0 TGCATGGTCAGCTTTAGTTGATGCTGGTGGAATCAATCCTGCTATTAAGTCATCACCATC 575
consensus_10093#1 ------------------------------------------------------------
consensus_10093#2 ------------------------------------------------------------
consensus_10093#0 AGCTTATTCAATTCTTATAACTGGCGCCACTGGTGGTGTTGGCATGATTGCTGCACAATT 635
consensus_10093#1 ------------------------------------------------------------
consensus_10093#2 ------------------------------------------------------------
consensus_10093#0 GGCTAAACTTTGGNGTTGGAGAGTTCA 662
consensus_10093#1 ---------------------------
consensus_10093#2 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||