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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1101 fasta sequence
[ACTACTAACTCAG-AAGGGATGTGTTTGAAGCAGTTCGTCGCACAACAAGATTTAATAAGTTCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTATCAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAGCATTCCCGCAATATGCAGCGTACTGTGCCTCTGGAATCGCAACAATCTCATCTAGTTATTCAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTTCCGAAGGGTCCTTGAATCAGCTAGTCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGT-GTACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCT-GCCTGAGTTATCAGTTAGTGATATTG-AAACGCAACTTGGACCTTCAACTGGTTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG-CTGTTTTTAGCAATGAGTTGAGTACTACACCTCCACCTTCCGAAATATCTATTCAACGCATGGCACAACAACGGCAAAATGTAGTTCACCCTAATCCTGATTCAGTTCGTCAGTCCTATTCTCAGCGTCCTGTAGATCACTGCAGGGAATATCAACCAAGCAACCAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCTTCCCTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACAACATATCGATCCT-CAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTTGTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGTCAGTCCAGTTCTCCTATTGTTTTGCAAAGTCCAGTCCCCCAATCAACACAACAACATCTTTCAGTAGTTAATAGTCATGGAAAATTCATTTCACAACCTCTTCAACCCAAATCTCCTAACCCAATGACTCCTCCACCCCCA]
[+] EMBL CD110823 [ACTACTAACTCAG AAGGGATGTGTTTGAAGCAGTTCGTCGCACAACAAGATTTAATAAGTTCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTATCAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAGCATTCCCGCAATATGCAGCGTACTGTGCCTCTGAAATCGCAACAATCTCATCTAGTTATTCAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTACCGAAGGGTCCTTGAATCAGCTAGTCGATACCGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGT GTACCTGGACCTCATCCACGACATTGTGTAAA ]
[-] EMBL CD178425 [ ACTCAGNAAGGGATGTGTTT AAGCAGTTCGTCGCACAACAAGATTTAATAAGTTCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTATCAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAGCATTCCCGCAATATGCAGCGTACTGTGCCTCTGGAATCGCAACAATCTCATCTAGTTATTCAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTTCCGAAGGGTCCTTGAATCAGCTAGTCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGT GTACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTGt ]
[+] EMBL CD179082 [ CTCAG AAGGGATGTGTTTGAAGCAGTTCGTCGCACAACAAGATTTAATAAGTTCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTATCAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAGCATTCCCGCAATATGCAGCGTACTGTGCCTCTGGAATCGCAACAATCTCATCTAGTTATTCAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTTCCGAAGGGTCCTTGAATCAGCTAGTCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGT GTACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGGTATCT GCCTGAGTTATCAGTTAGTGATATTGAAAACGC ACTTGGACCTTTCACTGGTTTTG ACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATGCCTGTTTTTAGCAATGAGTTGAGTACT ]
[+] EMBL CD178830 [ CTCAG AAGGGATGTGTTTGAAGCAGTTCGTCGCACAACAAGATTTAATAAGTTCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTATCAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAGCATTCCCGCAATATGCAGCGTACTGTGCCTCTGGAATCGCAACAATCTCATCTAGTTATTCAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTTCCGAAGGGTCCTTGAATCAGCTAGTCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGT GTACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTGGGTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG CTGGTTTTAGCCATGAGTTGAGTAC ]
[-] EMBL CD178591 [ TCAG AAGGGATGTG TTGAAGCAGTTCGTCGCACAACAAGATTTAATAAGTTCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTATCAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAGCATTCCCGCAATATGCAGCGTACTGTGCCTCTGGAATCGCAACAATCTCATCTAGTTATTCAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTTCCGAAGGGTCCTTGAATCAGCTAGTCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGT GTACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTGGTTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG CTGTTTTTAGCAATGAGTTGAGTACT ]
[-] EMBL CD147668 [ CCACAATCAGTCCATGATTCTTCCGAAGGGTCCTTGAATCAGCTAGCCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCTTATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGTCGCACGTGGACCTCATTCACGACATTGTGTAAACACGCTCACAGGTAATCTAGCCTGAGTTATCAGTTAGTGATATTG AA ]
[-] EMBL CD180415 [ GTCATGATCTTGGATCCTCACAAAGT GTACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTGGTTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG CTGTTTTTAGCAATGAGTTGAGTACTACACCTCCACCTTCCGAAATATCTATTCAACGCATGGCACAACAACGGCAAAATGTAGTTCACCCTAATCCTGATTCAGTTCGTCAGTCCTATTCTCAGCGTCCTGTAGATCACTGCAGGGAATATCAACCAAGCAACCAGTCAATCAATGTTCAACAACATCAG ]
[+] EMBL CD096716 [ TACCTGGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTAGTTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG CTGTTTTTAGCAATGAGTTGAGTACTACACCTCCACCTTCCGAAATATCTATTCAACGCATGGCACAACAACGGCAAAATGTAGTTCACCCTAATCCTGATTCAGTTCGTCAGTCCTACTCTCAGCGTCCTGT ]
[+] EMBL CD112821 [ TACCTGGAGCTCATCCACGAGATTGTGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTGGTTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG CTGTTTTTAGCAATGAGTTGAGTACTACACCTCCACCTTCCGAAATATCTATTCAACGCATGGCACAACAACGGCAAAATGTAGTTCACCCTAATCCTGATTCAGTTCGTCAGTCCTATTCTCAGCGTCCTGTAGATCACTGCAGGGAATATCAACCAAGCAACCAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCGTCCC ]
[-] EMBL CD178174 [ CATCCACGACATTGGGTAAACACGCTTACAGGTAATCT GCCTGAGTTATCAGTTAGTGATATTG AAACGCAACTTGGACCTTCAACTGGTTTTGAACTTAGTGAACCTAACTTAGCTGACGACAGTCCAAAATCAATTATACCAAATG CTGTTTTTAGCAATGAGTTGAGTACTACACCTCCACCTTCCGAAATATCTATTCAACGCATGGCACAACAACGGCAAAATGTAGTTCACCCTAATCCTGATTCAGTTCGTCAGTCCTATTCTCAGCGTCCTGTAGATCACTGCAGGGAATATCAACCAAGCAGCCAGTCAATTAATGTTCAACAACATCAGATTCCTCGCTCTTCCCTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACAACATATCGATCCT CAGAGTGGTCGAGTACAGATAAGG ]
[-] EMBL CD178893 [ TAGTTCACCCTAATCCTGATTCAGTTCGTCAGTCCTATTCTCAGCGTCCTGTAGATCACTGCAGGGAATATCAACCAAGCAACCAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCTTCCCTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACAACATATCGATCCT CAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTTGTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGTCAGTCCAGTTCTCCTATTGTTTTGCAAAGTCCAGTCCCCCAATCAACACAACAACATCTTTCAGTAGTTAATAGTCATGGAAAATTCATTTCACAACCTCTTCAACCCAAATCTCCTAACCCAATGACTCCTCCACCCCCA]
[-] EMBL CD162224 [ TCCTCAAAGTCAGGTTCGACCTATGCAACAACAACATATCGATCCTNCAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTTGTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGTCAGTCCAGTTCTCCTATTGTTTTGCAAAGagagg ]
consensusID : consensus_10095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence
[ACGTCAGTCCAGTTCTCCTATTGTTTTGCAAAGTCCAGTTCCCCAATCAACACAACAACATCTTTCAGTAGTTAATAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCTTCCCTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACGACATATCGATCCTCAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTTGTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGTCAGT]
[-] EMBL CD090277 [ACGTCAGTCCAGTTCTCCTATTGTTTTGCAAAGTCCAGTTCCCCAATCAACACAACAACATCTTTCAGTAGTTAATAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCTTCCCTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACGACATATCGATCCTCAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTTGTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGTCAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10095#0 ACTACTAACTCAGAAGGGATGTGTTTGAAGCAGTTCGTCGCACAACAAGATTTAATAAGT 60
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 TCGCCTTTCGACAATCAAAGTCAACCAGCTCATCTTGGTTCTGCTACCAAACCTCATTAT 120
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 CAGAAGTCACCATATTTAGGTCATTCATCCACAACTTATCTCCAAATTGTTGAAGACCAG 180
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 CATTCCCGCAATATGCAGCGTACTGTGCCTCTGGAATCGCAACAATCTCATCTAGTTATT 240
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 CAGGATCAACAAACCCATAAAACTGGACCACAATCAGTCCATGATTCTTCCGAAGGGTCC 300
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 TTGAATCAGCTAGTCGATACTGTTGATGTATGTCCTCCGAACAATACAATCTTAAATGCT 360
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 TATGATATGCCGCCTCGAGATACTAGTGGTCATGATCTTGGATCCTCACAAAGTGTACCT 420
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 GGACCTCATCCACGACATTGTGTAAACACGCTTACAGGTAATCTGCCTGAGTTATCAGTT 480
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 AGTGATATTGAAACGCAACTTGGACCTTCAACTGGTTTTGAACTTAGTGAACCTAACTTA 540
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 GCTGACGACAGTCCAAAATCAATTATACCAAATGCTGTTTTTAGCAATGAGTTGAGTACT 600
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 ACACCTCCACCTTCCGAAATATCTATTCAACGCATGGCACAACAACGGCAAAATGTAGTT 660
consensus_10095#1 --------------------------------------------------------ACGT 4
* *
consensus_10095#0 CACCCTAATCCTGATTCAGTTCGTCAGTCCTATTCTCAGCGTCCTGTAGATCACTGCAGG 720
consensus_10095#1 CAGTCCAGTTCTCCTATTGTTT-----TGCAAAGTCCAGTTCCCCAATCAACACAACAAC 59
** * * * ** * *** * * * *** ** * *** **
consensus_10095#0 GAATATCAACCAAGCAACCAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCTTCC 780
consensus_10095#1 ATCTTTCAGT--AGTTAATAGTCAATCAATGTTCAACAACATCAGATTCCTCGCTCTTCC 117
* *** ** * *****************************************
consensus_10095#0 CTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACAACATATCGAT 840
consensus_10095#1 CTTGTGACAGTCCCGATTCCTCAAAGTCAGGTTCGACCTATGCAACAACGACATATCGAT 177
************************************************* **********
consensus_10095#0 CCTCAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTT 900
consensus_10095#1 CCTCAGAGTGGTCGAGTACAGATAAGGAGTTCACAACCTTCATACTTTTATGCTCATGTT 237
************************************************************
consensus_10095#0 GTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGT 960
consensus_10095#1 GTTCCTGTTCCTGGACGTGTTTTGACTCAACCTCAAAAGCAACATCAGCAACTTCAACGT 297
************************************************************
consensus_10095#0 CAGTCCAGTTCTCCTATTGTTTTGCAAAGTCCAGTCCCCCAATCAACACAACAACATCTT 1020
consensus_10095#1 CAGT-------------------------------------------------------- 301
****
consensus_10095#0 TCAGTAGTTAATAGTCATGGAAAATTCATTTCACAACCTCTTCAACCCAAATCTCCTAAC 1080
consensus_10095#1 ------------------------------------------------------------
consensus_10095#0 CCAATGACTCCTCCACCCCCA 1101
consensus_10095#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||