These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1038 fasta sequence [TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATACATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAATATATCAGAATTG] [+] EMBL CD140861 [TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATACATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCC ] [+] EMBL CD140720 [TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATACATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATG ] [+] EMBL CD082151 [ aggaCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTTGGATCTGTTATCAGTCCAATATCTTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT AAAATAAAT ] [+] EMBL CD140083 [ atGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTCTCAACCAAGTTTGGCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAA ] [+] EMBL CD082881 [ TCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT AAAATAAATTCGTACGCTCTGTTACGCTTCCAAC AGCTACTTGA ] [+] EMBL CD179456 [ TTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGCGGGAAGAAATTCTCTGCCATACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTC ] [+] EMBL CD079554 [ GACAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTT AACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAATATATCAGAATT ] [-] EMBL CD073821 [ GAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAAAAAATCAGAATTG] [-] EMBL CD076466 [ GAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACACCCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATTTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAATATATCAGAATTG] [-] EMBL CD190083 [ TTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAAC ] [-] EMBL CD075767 [ GAACAAAATGATCCCGGTGTTGGGATTTCAAACATGTATTCGCCAACGACCCAGTCTTTTTAAAATAAAAATAAATTGGTACGTTTTGTTACGTTTCCACCAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATGGTATTGTTTCCAAACGAATTTTTATGCATTTTGGGGGTATCAGGCCCTGTGCCCATGTACATATAAATAATATGGTTTTTTTTCTTTTTTGTTCCCCCTAAATTTTGTCGATAAATATCGCAGGGTATTCCATTATATTTCATGAGCTTATACCCAAGTTTAAAAGTCATGAATATATCAGAATTG] consensusID : consensus_10098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [CGGCACGAGGCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCA] [+] EMBL CD084001 [CGGCACGAGGCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCA] consensusID : consensus_10098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [ACGGTCCATAATAGTGAGTCNCCTACTTTTGAATTTCTCTATGATTAATTGTGAAACAGTACTAACTGAACATTTGGCTTTTCAGCTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTCTACAAACGAATTTCTATGCATTTTG] [-] EMBL CD198353 [ACGGTCCATAATAGTGAGTCNCCTACTTTTGAATTTCTCTATGATTAATTGTGAAACAGTACTAACTGAACATTTGGCTTTTCAGCTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTCTACAAACGAATTTCTATGCATTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10098#0 TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATA 60 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 CATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAA 120 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 GTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGG 180 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 TTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAA 240 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 AGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCG 300 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 AAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGC 360 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 ATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGA 420 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 AGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGG 480 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 AATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTC 540 consensus_10098#1 ------------------------------------------------------------ consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 ACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCG-TGTAATATGCTATTT 599 consensus_10098#1 ----------------------------CGGCACGAGG-CCCCG-TGTAATATGCTATTT 30 consensus_10098#2 -------------------ACGGTCCATAATAGTGAGTCNCCTACTTTTGAATTTCTCTA 41 * ** * * ** * consensus_10098#0 CCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTT 659 consensus_10098#1 CCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTT 90 consensus_10098#2 TGATTAATTGTGAAACAGTACTAACTGAACATTTGGCTTTTCAG--CTTCAAAGGTGTTT 99 ** * * * *** *** ** * * * ************** consensus_10098#0 GCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAA 719 consensus_10098#1 GCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAA 150 consensus_10098#2 GCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAA 159 ************************************************************ consensus_10098#0 AATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT 779 consensus_10098#1 AATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT 210 consensus_10098#2 AATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT 219 ************************************************************ consensus_10098#0 AAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGT 839 consensus_10098#1 AAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGT 270 consensus_10098#2 AAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGT 279 ************************************************************ consensus_10098#0 GATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCAC 899 consensus_10098#1 GATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCAC 330 consensus_10098#2 GATTTTGTAAATCGTATTGTCTACAAACGAATTTCTATGCATTTTG-------------- 325 ******************** ************************* consensus_10098#0 TGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTG 959 consensus_10098#1 TGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTG 390 consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 TCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGT 1019 consensus_10098#1 TCGATAAATATCGCAGCGTATTACATTATATTTCA------------------------- 425 consensus_10098#2 ------------------------------------------------------------ consensus_10098#0 CATGAATATATCAGAATTG 1038 consensus_10098#1 ------------------- consensus_10098#2 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||