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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 809 fasta sequence
[CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTCGATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC-A-C-CCATA-TGTTGTTTTCTCA-TTTAAACCGAAACTAACAAACGAAATAGTGCA-TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA-TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT-CTAAATACACTAT]
[+] EMBL CD080170 [CCTCGNAGGCCAANAATTCGGCACGAGGATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTTTCTGCGTTGCTATGGGCGTCTATTATGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTTCTCGATTGTCATTGTCCTGTTATGGTTTATCGCCTCTTGTGCATGGGCCGATAATGTAAACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATANTGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCANTTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAA ]
[-] EMBL CD074360 [ AGTTTANAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACNTAATATGCATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT CTAAATACACTAT]
[+] EMBL CD063161 [ GCGTTTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAAAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCAT ]
[+] EMBL CD063173 [ GCGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAAAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCAT ]
[-] EMBL CD126256 [ CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTA TTCC A CACCATA TGTT ]
[-] EMBL CD063123 [ CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC ACC CCATA T ]
[-] EMBL CD063038 [ CGTCTCTGATATTTGGGTTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCCAA C CCATA TGTTGTTTT ]
[-] EMBL SMW738 [ ATGGTTCATATGGAAAGAAACTCCATGGTCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAAATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTACATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTTACTAAATACACTAT]
[+] EMBL AA791324 [ ATCATCTACATTATTTTGTGTGATGATAATGAGAAAAA NNACCTGTAAATCACTCATTTATCAGTTGTTATTTCC A C CCATA TGTTGTTTTCTCATTTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTT CATTCTTAAATTGTTCACGACTTATATCGATAATTGTGCTACAG ]
[-] EMBL SMW809 [ TTCC A C CCATA TGTTG TTTCTCA TTTAAACCGAAACTAACAAACGAAATAGTGCA TTTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGA TTATATCGATAATTGTGCTANAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCATTTTTTATCATATTATTCTTT CTAAATACACTAT]
consensusID : consensus_10099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 437 fasta sequence
[CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCTNCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGGTGTCTTAACTATGCTTT]
[+] EMBL CD080448 [CTCGAGGGCCANAATTCGGCACGAGGCGCGCGTTCCAGTTTTGTGTTGCACGATTTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTCATAGCATTCTGTGTCTTGCCAATANNGTGT CTNNTNCACCNNAGTGNAAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTNTATGTATNTGTTGGTGTCTTAACT ]
[+] EMBL CD121011 [ GCGCGTTCCAGTTTTGTGTTGCACGATTTAG TCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCT ]
[+] EMBL SMW818 [ TTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAACAAATACTTGGGAGATGATAGAATCGTCGTCTTCAGGATGGGAAGTTTTCAAAGAGCCCAAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGCAACAACGTGTGACTTCTCGACC AGTGTCAAGCTAAAGTATGTCTGTCAGGGTAACGGGTCATATACAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGTGCTTCCTCAATGCAATGCTGCGGAGAGTAAACACATGTATGGGAATTTCGCTGCAGCAGCACAGTTTTATGTATTTGTTGGTGTCTTAACTATGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10099#0 CCTCGNAGGCCAANAATTCGGCACGAGG-ATGTATGGGAATTTCGCTGCAGCAGCACAGT 59
consensus_10099#1 -CTCGAGGGCCANAA-TTCGGCACGAGGCGCGCGTTCCAGTTTTGT----GTTGCACGAT 54
**** ***** * ************ * * * *** * * **** *
consensus_10099#0 TTTATGTATTTGTTGGTGTCTT-AACTATGCTTT-TCTGCGTTGCTATGGGCGTCTATTA 117
consensus_10099#1 TTAGCTCTTGTTACAATCCTTTGAATTACCCTCTGCCCACACTTTCATCTAAAGAAGTAA 114
** * * * ** ** ** ** * * * * ** * *
consensus_10099#0 TGTCTATTTCCATGATCGTTACTTTGCTGACTCGCGCTTTAGTAAATACGAATTCATCTT 177
consensus_10099#1 CAAATACTTGGGAGATGATAGAATCGTCGTCTT-CAGGATGGGAAGTTTTCAAAGAGCCC 173
** ** *** * * * * ** * * * ** * * * *
consensus_10099#0 CTCGATTGTCATTGTCCTGTTATGGTT--TATCGCCTCTTGTGCATGGGCCGATAATGTA 235
consensus_10099#1 AAAGGTTTTATTAAAGTTATTGAAGTTCTTATAGCAATCTGTGCATTTGC-AACAACGTG 232
* ** * * * ** *** *** ** ******* ** * ** **
consensus_10099#0 AACCAGTTTAAAAAGTACACGTTAGTAAGCCGGATCTGCAATGAGGTGAAACCTAATATG 295
consensus_10099#1 TGACTTCTNCACCNNAGTGNAAAGCTAAAGTATGTCTGT--CAGGGTAACGGGTCATATA 290
* * * *** **** *** * * ****
consensus_10099#0 CATTGCGAAGCTACAGAACAAGCTACCTATGGGGGACTTAACGCGTCTCTGATATTTGGG 355
consensus_10099#1 CAAATTGGGGTGCCAAATTTACATACCCCTTCAATATTGACTCCATCGT---------GC 341
** * * ** * * **** * * * * * ** *
consensus_10099#0 TTTACTAATGTTGCTCTATGGGTAGCTGGTTTATGGTTCATATGGAAAGAAACTCCATGG 415
consensus_10099#1 TTCCTCAATGCAATGCTGCGGAGAGTAAA---------CACATGTATGGGAATTTCGCTG 392
** **** ** ** ** ** *** * * ** * * *
consensus_10099#0 TCTGGAAATAATTCTCTACTTGGACCAGAAAATATCGCTACTGCTGCCGATGGGTCTCAA 475
consensus_10099#1 CAGCAGCACAGTTNTATGTATNTGTTGGTGTCT-TAACTA-TGCTTT------------- 437
* * ** * * * * * * *** ****
consensus_10099#0 ATGTAGTGCGCACTCAAACAAGTCTTCATATACTGTTCTTTCAAGAATTAGATCAACTAC 535
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 ATTATTTTGTGTGATGATAATGAGAAAAATTCACCTGTAAATCACTCATTTATCAGTTGT 595
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TATTTCCACCCATATGTTGTTTTCTCATTTAAACCGAAACTAACAAACGAAATAGTGCAT 655
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TTTGTTTGTTTCATTATGATAAGATTACTGCTTCCATTCTTAAATTGTTCATGATTATAT 715
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 CGATAATTGTGCTACAGCACCAGTTTTTTTGAACTGAACATTTTCTTAGGTCAAATTTCA 775
consensus_10099#1 ------------------------------------------------------------
consensus_10099#0 TTTTTTATCATATTATTCTTTCTAAATACACTAT 809
consensus_10099#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||