These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 569 fasta sequence [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATT-ATTATC-ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCT-GATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATG-ATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATNNTGGAAGTTACGTAACACATGAAACCCANNATTTGATATNTTTCTATTTGGATGATCGAGCATTCCTTCTGTTTACNTCAGGATGAAAGGATGANTTTTTTTACAAAATGCAAATCATGAAGACAATTATTATGTAACATNGGCAACCTTTGATGTATCTATTTAATGTATTTGGCTTGNCTTCATNTATGGTCTTCACTTACTGNATTACATGATGNTAGNNNAAAAGAACGGGACCCTAATNGGATTNAAACAGGATATTC] [+] EMBL SMAA17935 [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATT ATTATC ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCT GATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATG ATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGAT ] [+] EMBL SMAA28832 [ATTACAAAATTATGAATTACCTAATTTAATAT AAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATTAATTATC ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCT GATATGAGTGAAG AATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGTATTTAGAAA ] [+] EMBL SMAA28848 [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATT ATTATC ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGGATATGAGTGAA ] [+] EMBL AI395858 [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAA ] [+] EMBL SM507 [ ATTATCAATTACAAAATGAGTGANCGTAAAGCAGTTATTAAAAATGCT GATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATG ATTNAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGANCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATNNTGGAAGTTACGTAACACATGAAACCCANNATTTGATATNTTTCTATTTGGATGATCGAGCATTCCTTCTGTTTACNTCAGGATGAAAGGATGANTTTTTTTACAAAATGCAAATCATGAAGACAATTATTATGTAACATNGGCAACCTTTGATGTATCTATTTAATGTATTTGGCTTGNCTTCATNTATGGTCTTCACTTACTGNATTACATGATGNTAGNNNAAAAGAACGGGACCCTAATNGGATTNAAACAGGATATTC] consensusID : consensus_10100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 473 fasta sequence [CACCAGNATTATCATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG-AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT-AGATAAACATGATTTAGAAAAAGATATA-GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAACTTATGAAGACAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTTCATTTACTGGATTACATTA-GATA-TAAAAAGAAAGGGAAACTAATTTTTTCTACCAGAATAACCCATTATTGTTAAAA] [+] EMBL CD081180 [CACCAGNATTATCATTACAAAATGATTGAACGTAAAGCAGTCATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATCATTTAGAAAAAGATATANGCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATT ] [-] EMBL CD075002 [ TTATCATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAACTTATGAAGGCAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTTCATTTCCTGGATTACATTA GATA TAAAAAGAAAGGGAAACTAATTTTTTCTACCAGAATAAC ] [+] EMBL SM9221 [ AAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAA ] [+] EMBL SMU55992 [ GTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAAATTATGAAGACAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTTCATTTACTGGATTACATTATGTTAGTAAAAAGAAAGGGAAACTAATTGATTTAAACAGAATATACCATTATTGTTAAAA] [+] EMBL AA952774 [ TATGAGTGAAGAAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATACTCCTAACTGGactt ] [+] EMBL SMAA98643 [ TATGAGTGAAGAAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATCAGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATACTCCTAACTGGactt ] [+] EMBL CD185375 [ AGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAACTTATGAAGACAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTCCATTTACTGGATTACATT ] consensusID : consensus_10100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [AATGCTGATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGATCGAAATATCATCCTACATGGCATTAGAGTCCACTTATTAAAG] [+] EMBL AI395865 [AATGCTGATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGATCGAAATATCATCCTACATGGCATTAGAGTCCACTTATTAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10100#1 ------------------------------------------------------------ consensus_10100#2 ------------------------------------------------------------ consensus_10100#0 ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATT 60 consensus_10100#1 -----------------------------------------CACCAGNATTATCATTACA 19 consensus_10100#2 ------------------------------------------------------------ consensus_10100#0 TATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATTATTATCATTACA 120 consensus_10100#1 AAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAGAAATGCAAGAGG 79 consensus_10100#2 -----------------------------AATGCTGATATGAGTGAAGAAATGCAAGAGG 31 consensus_10100#0 AAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAGAAATGCAAGAGG 180 ******************************* consensus_10100#1 ATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTG 139 consensus_10100#2 ATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTG 91 consensus_10100#0 ATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTG 240 ************************************************************ consensus_10100#1 CTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGAC 199 consensus_10100#2 CTAATATAAAAAAAGATTTTGATCGAAA-TATCATCCTACATGGCATTAGA------GTC 144 consensus_10100#0 CTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGAC 300 **************************** ******************* * * * consensus_10100#1 GACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATG 259 consensus_10100#2 CACTTATTAAAG------------------------------------------------ 156 consensus_10100#0 GACATNNTGGAAGTTACGTAACACATGAAACCCANNATTTGATATNTTTCTATTTGGATG 360 ** * * * consensus_10100#1 ATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATG--AAC 317 consensus_10100#2 ------------------------------------------------------------ consensus_10100#0 ATCGAGCATTCCTTCTGTTTACNTCAGGATGAAAGGATGANTTTTTTTACAAAATGCAAA 420 consensus_10100#1 TTATGAAGACAATTATTATGTAACATTGCAAA--TTTTATGTATCTATTTAATGTATTTT 375 consensus_10100#2 ------------------------------------------------------------ consensus_10100#0 TCATGAAGACAATTATTATGTAACATNGGCAACCTTTGATGTATCTATTTAATGTATTTG 480 consensus_10100#1 GCTTTTCTTCATTTATG-TCTTCATTTACTGGATTACATTAGAT---ATAAAAAGAAAGG 431 consensus_10100#2 ------------------------------------------------------------ consensus_10100#0 GCTTGNCTTCATNTATGGTCTTCACTTACTGNATTACATGATGNTAGNNNAAAAGAACGG 540 consensus_10100#1 GAAACTAATTTT-TTCTACCAGAATAACCCATTATTGTTAAAA 473 consensus_10100#2 ------------------------------------------- consensus_10100#0 GACCCTAATNGGATTNAAACAGGATATTC-------------- 569 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||