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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 569 fasta sequence
[ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATT-ATTATC-ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCT-GATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATG-ATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATNNTGGAAGTTACGTAACACATGAAACCCANNATTTGATATNTTTCTATTTGGATGATCGAGCATTCCTTCTGTTTACNTCAGGATGAAAGGATGANTTTTTTTACAAAATGCAAATCATGAAGACAATTATTATGTAACATNGGCAACCTTTGATGTATCTATTTAATGTATTTGGCTTGNCTTCATNTATGGTCTTCACTTACTGNATTACATGATGNTAGNNNAAAAGAACGGGACCCTAATNGGATTNAAACAGGATATTC]
[+] EMBL SMAA17935 [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATT ATTATC ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCT GATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATG ATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGAT ]
[+] EMBL SMAA28832 [ATTACAAAATTATGAATTACCTAATTTAATAT AAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATTAATTATC ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCT GATATGAGTGAAG AATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGTATTTAGAAA ]
[+] EMBL SMAA28848 [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATT ATTATC ATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGGATATGAGTGAA ]
[+] EMBL AI395858 [ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATTTATTCTAAATTGCATATTAGTTGTTATTAATCAAA ]
[+] EMBL SM507 [ ATTATCAATTACAAAATGAGTGANCGTAAAGCAGTTATTAAAAATGCT GATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATG ATTNAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGANCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATNNTGGAAGTTACGTAACACATGAAACCCANNATTTGATATNTTTCTATTTGGATGATCGAGCATTCCTTCTGTTTACNTCAGGATGAAAGGATGANTTTTTTTACAAAATGCAAATCATGAAGACAATTATTATGTAACATNGGCAACCTTTGATGTATCTATTTAATGTATTTGGCTTGNCTTCATNTATGGTCTTCACTTACTGNATTACATGATGNTAGNNNAAAAGAACGGGACCCTAATNGGATTNAAACAGGATATTC]
consensusID : consensus_10100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 473 fasta sequence
[CACCAGNATTATCATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG-AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT-AGATAAACATGATTTAGAAAAAGATATA-GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAACTTATGAAGACAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTTCATTTACTGGATTACATTA-GATA-TAAAAAGAAAGGGAAACTAATTTTTTCTACCAGAATAACCCATTATTGTTAAAA]
[+] EMBL CD081180 [CACCAGNATTATCATTACAAAATGATTGAACGTAAAGCAGTCATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATCATTTAGAAAAAGATATANGCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATT ]
[-] EMBL CD075002 [ TTATCATTACAAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAACTTATGAAGGCAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTTCATTTCCTGGATTACATTA GATA TAAAAAGAAAGGGAAACTAATTTTTTCTACCAGAATAAC ]
[+] EMBL SM9221 [ AAAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAA ]
[+] EMBL SMU55992 [ GTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAAATTATGAAGACAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTTCATTTACTGGATTACATTATGTTAGTAAAAAGAAAGGGAAACTAATTGATTTAAACAGAATATACCATTATTGTTAAAA]
[+] EMBL AA952774 [ TATGAGTGAAGAAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATACTCCTAACTGGactt ]
[+] EMBL SMAA98643 [ TATGAGTGAAGAAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATCAGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATACTCCTAACTGGactt ]
[+] EMBL CD185375 [ AGTGAAG AAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTAT AGATAAACATGATTTAGAAAAAGATATA GCTGCTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGACGACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATGATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATGAACTTATGAAGACAATTATTATGTAACATTGCAAATTTTATGTATCTATTTAATGTATTTTGCTTTTCTTCATTTATGTCTCCATTTACTGGATTACATT ]
consensusID : consensus_10100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence
[AATGCTGATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGATCGAAATATCATCCTACATGGCATTAGAGTCCACTTATTAAAG]
[+] EMBL AI395865 [AATGCTGATATGAGTGAAGAAATGCAAGAGGATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTGCTAATATAAAAAAAGATTTTGATCGAAATATCATCCTACATGGCATTAGAGTCCACTTATTAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10100#1 ------------------------------------------------------------
consensus_10100#2 ------------------------------------------------------------
consensus_10100#0 ATTACAAAATTATGAATTACCTAATTTAATATAAAATAAAAACTATAAAATTGTACAATT 60
consensus_10100#1 -----------------------------------------CACCAGNATTATCATTACA 19
consensus_10100#2 ------------------------------------------------------------
consensus_10100#0 TATTCTAAATTGCATATTAGTTGTTATTAATCAAATTAAATTATTATTATTATCATTACA 120
consensus_10100#1 AAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAGAAATGCAAGAGG 79
consensus_10100#2 -----------------------------AATGCTGATATGAGTGAAGAAATGCAAGAGG 31
consensus_10100#0 AAATGAGTGAACGTAAAGCAGTTATTAAAAATGCTGATATGAGTGAAGAAATGCAAGAGG 180
*******************************
consensus_10100#1 ATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTG 139
consensus_10100#2 ATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTG 91
consensus_10100#0 ATGCAATACATATAGCTGCTGGTGCTATAGATAAACATGATTTAGAAAAAGATATAGCTG 240
************************************************************
consensus_10100#1 CTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGAC 199
consensus_10100#2 CTAATATAAAAAAAGATTTTGATCGAAA-TATCATCCTACATGGCATTAGA------GTC 144
consensus_10100#0 CTAATATAAAAAAAGATTTTGATCGAAAATATCATCCTACATGGCATTGTATAGTTGGAC 300
**************************** ******************* * * *
consensus_10100#1 GACATTTTGGAAGTTACGTAACACATGAAACCCATAATTTTATATATTTCTATTTGGATG 259
consensus_10100#2 CACTTATTAAAG------------------------------------------------ 156
consensus_10100#0 GACATNNTGGAAGTTACGTAACACATGAAACCCANNATTTGATATNTTTCTATTTGGATG 360
** * * *
consensus_10100#1 ATCGAGCATTCCTTCTTTTTAAATCAGGATGAAAGGATGATTTTTTTTACAAATG--AAC 317
consensus_10100#2 ------------------------------------------------------------
consensus_10100#0 ATCGAGCATTCCTTCTGTTTACNTCAGGATGAAAGGATGANTTTTTTTACAAAATGCAAA 420
consensus_10100#1 TTATGAAGACAATTATTATGTAACATTGCAAA--TTTTATGTATCTATTTAATGTATTTT 375
consensus_10100#2 ------------------------------------------------------------
consensus_10100#0 TCATGAAGACAATTATTATGTAACATNGGCAACCTTTGATGTATCTATTTAATGTATTTG 480
consensus_10100#1 GCTTTTCTTCATTTATG-TCTTCATTTACTGGATTACATTAGAT---ATAAAAAGAAAGG 431
consensus_10100#2 ------------------------------------------------------------
consensus_10100#0 GCTTGNCTTCATNTATGGTCTTCACTTACTGNATTACATGATGNTAGNNNAAAAGAACGG 540
consensus_10100#1 GAAACTAATTTT-TTCTACCAGAATAACCCATTATTGTTAAAA 473
consensus_10100#2 -------------------------------------------
consensus_10100#0 GACCCTAATNGGATTNAAACAGGATATTC-------------- 569
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||