These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 939 fasta sequence [AATCTTGGTTGTGAAAACATGTAAGTCATGCGGTTATGATAAATAAGTATCAAATTAGATTATATATATATATATATATATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCCACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTA---AGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGACATGTCCATGTTTCGTATTGAAATATTCCCACTACGTTTTGAAATAGCGC] [+] EMBL CD072878 [AATCTTGGTTGTGAAAACATGTAAGTCATGCGGTTATGATAAATAAGTATCAAATTAGATTATATATATATATATATATATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCCACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGGGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTT ] [+] EMBL CD072990 [AATCTTGGTTGTGAAAACATGTAAGTCATGCGGTTATGATAAATAAGTATCAAATTAGATTATATATATATATATATATATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCCACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATG ] [+] EMBL CD076652 [ ATATATATATATATATATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTACTAACAAACAATCCCAATAGCGTAGTGAATAAAATTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCCACAAAGACAGCAAAA ] [+] EMBL CD074908 [ ATATATATATATATATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCCACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTACTTAGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGAT ] [+] EMBL CD076443 [ TTGATTACTCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCCACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGT AAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGC ] [-] EMBL CD083078 [ AGCAAGGGGAATCAATATGGCCAGTACNCCGGCCACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTA AGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATT ] [-] EMBL CD082858 [ ACAGCCANAGCTATCTTTNTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTA AGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGA TTATTGACTGAAnt ] [-] EMBL CD078320 [ CTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGGGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTA AGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGACATGTCCATGTTTCGTATTGAA ] [-] EMBL CD078522 [ TATGATCCGCTATCATCAGACCGGTAAATACCACCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTA AGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGACATGTCCATGTTTCGT ] [-] EMBL CD084368 [ CCGTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTACTTAGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGAC ] [-] EMBL CD083824 [ AAATGATTAATGCACTGNTATGTTCACTTAAGTCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTA AGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGACATGTCCATGTTTCGTATTGAAATATTCCC ] [-] EMBL CD081086 [ ttatGGTCTTTAT ACCAT CTAT GG ACC AAATCGAAAGCAACACGAATGCAATAGCCCATGCTCCGACTTTTACTAGAACACACGCATTGATGACAGAGTATCCTTGAGCTACAGAAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCTTTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGAAAATTGTTACACATTCATTCGTTTTAAAATTTTTACTTAGTACGGATAGGATTAGTGTAACAGTGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTTTGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACAATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGACATGTCCATGTTTCGTATTGAAATATTCCGACTACGTTTTGAAATAGCGC] consensusID : consensus_10104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [ATATATATATATCTATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGCTGAAAAAAGAATGTAAAACGAAAGATTATAATTGATCTGATTAATGTAAAACATGTAAAGTACGGAAGTAGAAACAAACGACTAAGTAATAAGCTTATTAAAACAACCTTCGACCAAAGTTATAAGACGTCTATTTCAAAAGGAATGAATTACCATCCTTTAGATTTTTCGATGCTTGAAAATTTTTATACCCGGTTGATTTCCTTTTTTTTAAACCCTTCGGATTTTATGGGAAAAAACCTTTCCCACCCAAATAATACCCAAAGTTTNNGGGGGCCCCCTCTGG] [+] EMBL CD077217 [ATATATATATATCTATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTGATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTAGTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTGCCAAATGTAAGCTGTCCAAAACCAATAGCAAGCTGAAAAAAGAATGTAAAACGAAAGATTATAATTGATCTGATTAATGTAAAACATGTAAAGTACGGAAGTAGAAACAAACGACTAAGTAATAAGCTTATTAAAACAACCTTCGACCAAAGTTATAAGACGTCTATTTCAAAAGGAATGAATTACCATCCTTTAGATTTTTCGATGCTTGAAAATTTTTATACCCGGTTGATTTCCTTTTTTTTAAACCCTTCGGATTTTATGGGAAAAAACCTTTCCCACCCAAATAATACCCAAAGTTTNNGGGGGCCCCCTCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10104#0 AATCTTGGTTGTGAAAACATGTAAGTCATGCGGTTATGATAAATAAGTATCAAATTAGAT 60 consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 TATATATATATATATATATATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTG 120 consensus_10104#1 -----ATATATATATATCTATATATGCTTTTAACGATACATTCACAGAAGTTTATTTTTG 55 ************ ****************************************** consensus_10104#0 ATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTA 180 consensus_10104#1 ATTAATCCCTCAATGAAATGAACTTCTACACTGCTAGTAACAAAAAATCCCAATAGCGTA 115 ************************************************************ consensus_10104#0 GTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTG 240 consensus_10104#1 GTGAATAAAGTTAATGCTGCTATACAGTAATCCGGATTGAAAGTATAGCTGAGATTTGTG 175 ************************************************************ consensus_10104#0 CCAAATGTAAGCTGTCCAAAACCAATAGCAAGGGGAATCAATATGGCCAGTACCCCGGCC 300 consensus_10104#1 CCAAATGTAAGCTGTCCAAAACCAATAGCAAGCTGAAAAAAGAA----TGTAAAACGA-- 229 ******************************** *** ** * *** ** consensus_10104#0 ACAAAGACAGCCAAAGCTATCTTTTTATGATCCGCTATCATCAGACCGGTAAATACCACC 360 consensus_10104#1 AAGATTATAATTGATCTGATTAATGTAAAACATGTAAAGTACGGA--AGTAGAAACAAAC 287 * * * * * ** * ** * * * * ** *** * ** * * consensus_10104#0 GTAGTTATGAAAAGTTCAGCAGCACAGTAAATGATTAATGCACTTGTATGTTCACTTAAG 420 consensus_10104#1 GACTAAGTAATAAGCTTATTAAAACAACCTTCGACCAAAGTTATAAGACGTCTATTTCAA 347 * * * *** * * * *** ** ** * * * ** * ** * consensus_10104#0 TCGGTCTTTATAACCATACCTATCGGAACCAAAATCGAAAGCAACACGAATGCAATAGCC 480 consensus_10104#1 AAGGAATGAATTACCAT--CCTTTAGATTT----TTCGATGCTTGAAAATTTTTATACCC 401 ** * ** ***** * * ** * * ** * * * *** ** consensus_10104#0 CAT-GCTCCGACTTTTACTAGAACACACGCATTG-ATGACAGAGTATCCTTGAGCTACAG 538 consensus_10104#1 GGTTGATTTCCTTTTTTTTAAACCCTTCGGATTTTATGGGAAAAAACCTTTC--CCACCC 459 * * * **** ** * * ** *** *** * * * * ** * ** consensus_10104#0 AAATACACGCTCCGTATAAAATTAACATTATTATATTCAGGGGATATGTTTCTCTCATCT 598 consensus_10104#1 AAATA-ATACCC-----AAAGTTTNNGGGGGCCCCCTCTGG------------------- 494 ***** * * * *** ** ** ** consensus_10104#0 TTCGTAAAATAACCAACATCATTCCTAGAAAAGTACCAATGATGGTGAATGCGACTGTGA 658 consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 AAATTGTTACACATTCATTCGTTTTAAAATTTTTAAGTACGGATAGGATTAGTGTAACAG 718 consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 TGATTGATACAACTGATAGCGCGCTAGTAAGTATCAATACCATCGCAGTATATGATGGTT 778 consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 TGGGTTGTCGGACATTCCACTGAAATATATGCTTTATTCTGAAGCCCATATTGCGGCACA 838 consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 ATATCAATGGTGCTTATTGACGATCTTAATTTAGATTTATTGACTGAATGACATGTCCAT 898 consensus_10104#1 ------------------------------------------------------------ consensus_10104#0 GTTTCGTATTGAAATATTCCCACTACGTTTTGAAATAGCGC 939 consensus_10104#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||