cluster # 10105

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Schistosoma mansoni
cluster # 10105 cluster # 10105 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10105#0 length = 703 sequences # 12

consensus_10105#1 length = 446 sequences # 1

consensusID : consensus_10105#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 703
fasta sequence

                              [TGGATGCTGAAGGTTGAAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGTAAGAAAATCATTACCCCAAGCTGTCCGAAGGCGTAAACATAACTTTCAGAAACGACTTGCAGCAATCAAAAAGACCAACTTGAATTTCAGATTTCATGAAGCTAATATATCATAAAAATTTCTAAATCCAATAGAAAAAACTTATTTCCAAATGATGTTTACTGTGCAATTTTGACACTAATTATTATAAAAAGGCCCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]

[+] EMBL CD113444             [TGGATGCTGAAGGTTGAAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGTAAGAAAATCATTACCCCAAGCTGTCCGAAGGCGTAAACATAACTTTCAGAAACGACTTGCAGCAATCAAAAAGACCAACTTGAATTTCAGATTTCATGAAGCTAATATATCATAAAAATTTCTAAATCCAATAGAAAAAACTTATTTCCAA                                                                                                             ]
[+] EMBL CD159184             [TGGATGCTGAAGGTTGAAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGTAAGAAA                                                                                                                                                                                                                                                              ]
[+] EMBL CD197976             [             TTGAAGCGCGACGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD141802             [              TGAAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGTAAGAACATCATTAC                                                                                                                                                                                                                                                      ]
[+] EMBL CD189323             [                AAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATCTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCACCAAAATAATAAAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD161054             [                  GCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACA                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD133419             [                   CGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTCCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAG                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD161404             [                          GCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACC                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD161281             [                          GCCGGACTTTACGTTACTTTATGAAAGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACC                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD128404             [                                                                                      TCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAACTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGTAAGAAAATCATTACCCC AGCTGTCCGAAGGCGTAAACATAACTTTCAGAAACGACTTG                                                                                                                                                                                                         ]
[-] EMBL AI977512             [                                                                                                                                                                                                                                                               AACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACATGAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGTAAGAAAATCATTACCCCAAGCTGTCCGAAGGCGTAAACATAACTTTCAGAAACGACTTGCAGCAATCAAAAAGACCAACTTGAATTTCAGATTTCATGAAGCTAATATATCATAAAAATTTCTAAATCCAATAGAAAAAACTTATTTCCAAATGATGTTTACTGTGCAATTTTGACACTAATTATTATAAAAAGGCCCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL CD128252             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TACCCCAAGCTGTCCGAAGGCGTAAACATAACTTTCAGAAACGACTTGCAGCAATCAAAAAGACCAACTTGAATTTCAGATTTCAT                                                                                                                                                                   ]




>consensus_10105#0
TGGATGCTGAAGGTTGAAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACA
AACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTG
CGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAG
ACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTA
TCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTGAAATCTTGCCA
GACAATAAAAGACTGTTTCGAACAAGCAAATACCTACGAAGTTCAACTCGTGCATCACAT
GAAGAAAATCAAACCATGGCGACAATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGA
AAGGATTTTACTAATAGTTCAGTAAGAAAATCATTACCCCAAGCTGTCCGAAGGCGTAAA
CATAACTTTCAGAAACGACTTGCAGCAATCAAAAAGACCAACTTGAATTTCAGATTTCAT
GAAGCTAATATATCATAAAAATTTCTAAATCCAATAGAAAAAACTTATTTCCAAATGATG
TTTACTGTGCAATTTTGACACTAATTATTATAAAAAGGCCCTTTGAAAAAAAAAAAAAAA
AAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA

consensusID : consensus_10105#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [AGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGGTTTGTTTCTTTCTTGCTATCAAACATTTGAATAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTAAGTTATTTACACACTTAGGTTTATTTGGACACTGAAGTATCCAGTTCCGATGGTGTCCTCATATATGAGTTCTCTGATTACTTTCATGAATTATCAGAGTTATGCCAAACGAAGCCAAATTTTTGGTTACAAATAAGGATGTCAAAGATACTTTGCATGATTACCCACGGGTC]

[-] EMBL CD189718             [AGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAGGTTTGTTTCTTTCTTGCTATCAAACATTTGAATAGACTGGTAAGTGGAAAGACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGCAATTCAACAAAATAATAAAGTGTAAGTTATTTACACACTTAGGTTTATTTGGACACTGAAGTATCCAGTTCCGATGGTGTCCTCATATATGAGTTCTCTGATTACTTTCATGAATTATCAGAGTTATGCCAAACGAAGCCAAATTTTTGGTTACAAATAAGGATGTCAAAGATACTTTGCATGATTACCCACGGGTC]




>consensus_10105#1
AGCATGACAAACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCA
TCTGAATTGCGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAG
TCTAGGAAGGTTTGTTTCTTTCTTGCTATCAAACATTTGAATAGACTGGTAAGTGGAAAG
ACAGTGCTTTTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACA
ACTTGCTGCAATTCAACAAAATAATAAAGTGTAAGTTATTTACACACTTAGGTTTATTTG
GACACTGAAGTATCCAGTTCCGATGGTGTCCTCATATATGAGTTCTCTGATTACTTTCAT
GAATTATCAGAGTTATGCCAAACGAAGCCAAATTTTTGGTTACAAATAAGGATGTCAAAG
ATACTTTGCATGATTACCCACGGGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10105#0      TGGATGCTGAAGGTTGAAGCGCGAGGGCCGGACTTTACGTTACTTTATGAAAGCATGACA 60
consensus_10105#1      ---------------------------------------------------AGCATGACA 9
                                                                          *********

consensus_10105#0      AACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTG 120
consensus_10105#1      AACAATCTCGTTGTACTGCATATAACTCGCTTACCCAAATATTTTGGACCATCTGAATTG 69
                       ************************************************************

consensus_10105#0      CGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAG 180
consensus_10105#1      CGAAAATACATTGAGCAATTTGGAAAAGTTCATGATCTCCATATACCAAAGTCTAGGAAG 129
                       ************************************************************

consensus_10105#0      -----------------------------------ACTGGTAAGTGGAAAGACAGTGCTT 205
consensus_10105#1      GTTTGTTTCTTTCTTGCTATCAAACATTTGAATAGACTGGTAAGTGGAAAGACAGTGCTT 189
                                                          *************************

consensus_10105#0      TTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGC 265
consensus_10105#1      TTGTCCGAATGTCGAATGAAGTCGCTCCTCTCGTATCCTCGACATTAAACAACTTGCTGC 249
                       ************************************************************

consensus_10105#0      AATTCAACAAAATAATAAAGTGTGAAATCTTGCCAGACAATAAAAGACTGTTTCGAACAA 325
consensus_10105#1      AATTCAACAAAATAATAAAGTGTAAGTTATTTACACAC----TTAGGTTTATTTGGACAC 305
                       *********************** *  * **  ** **      **  *  ** * *** 

consensus_10105#0      GCAAATACCTACGAAGTTCAACTCGTG-CATCACATGAAGAAAATCAAACCATGGCGAC- 383
consensus_10105#1      TGAAGTATCCA----GTTCCGATGGTGTCCTCATATATGAGTTCTCTGATTACTTTCATG 361
                         ** ** * *    ****   * *** * *** **        **  *  *     *  

consensus_10105#0      AATAAAACGTGTTACAGCCCTGAACGCCCTCAAGGGAAAGGATTTTACTAATAGTTCAGT 443
consensus_10105#1      AATTATCAGAGTTATG---CCAAACGAAGCCAAATTTTTGG---TTACAAATAAGGATGT 415
                       *** *   * ****     *  ****    ***      **   **** ****     **

consensus_10105#0      AAGAAAATCATTACCCCAAGCTGTCCGAAGGCGTAAACATAACTTTCAGAAACGACTTGC 503
consensus_10105#1      CAAAGATACTTTGCATGA--TTACCCACGGGTC--------------------------- 446
                        * * *  * ** *   *   *  **   **                             

consensus_10105#0      AGCAATCAAAAAGACCAACTTGAATTTCAGATTTCATGAAGCTAATATATCATAAAAATT 563
consensus_10105#1      ------------------------------------------------------------
                                                                                   

consensus_10105#0      TCTAAATCCAATAGAAAAAACTTATTTCCAAATGATGTTTACTGTGCAATTTTGACACTA 623
consensus_10105#1      ------------------------------------------------------------
                                                                                   

consensus_10105#0      ATTATTATAAAAAGGCCCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAG 683
consensus_10105#1      ------------------------------------------------------------
                                                                                   

consensus_10105#0      CTGCATTACCGTACTGCGTA 703
consensus_10105#1      --------------------