These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 729 fasta sequence [CACTTTGAGTTTGGTAATCACTGACCATGGTATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTTCATTGATCACTGTGATCGTATTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACATCTCACATTCAAAAAAAAAAAACAAAACAAAAGAA] [+] EMBL CD183508 [CACTTTGAGTTTGGTAATCACTGACCATGGTATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGAT ] [+] EMBL CD079553 [ ACTGACCATGGTATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACCTTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTTCATTGATCACTGTGATCGTATTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACA ] [-] EMBL CD073820 [ TGGTATTGTTGCCTAATAGACNTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACCTTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTTCATTGATCACTGTGATCGTATTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCAATATAAACAACAT ] [+] EMBL AF121199 [ TATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCAGCTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGTCAACATGGGATCAAGGTTAATCAAAAGTAGACTTTACATCGTTCTTCATTGATCACCGTGATCGTATTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACA ] [+] EMBL CD080062 [ GACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAA CATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTCCATTGATCACTGTGTTCGTGTTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACA ] [-] EMBL AI395300 [ aaTGTCCAGTGATCGCCTGTTCAACAGGTTCTCAATACAGT ATCTTGCGTGGG CCATTTGGATCGTAAATCGGGTGGATTGCGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGGGATTTCCAACGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTCCATTGATCACTGTGTTCGTGTTATGTGACTAGACATCTGTATGCTGCTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACATCTCACATTCAAAAAAAAAAAACAAAACAAAAGAA] [-] EMBL SMAA25729 [ CACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGTCAACATGGGATCAAGGTTAATCAAAAGTAGACTTTACATCGTTCTTCATTGATCACCGTGATCGTATTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACAT ] consensusID : consensus_10106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence [GAGCCAGAATTCGGCACGAGGTTACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTCCATTGATCACTGTGTTCGTGTTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACAT] [+] EMBL CD079293 [GAGCCAGAATTCGGCACGAGGTTACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTCCATTGATCACTGTGTTCGTGTTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACA ] [-] EMBL CD073574 [ tcACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTGGATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCATATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGAATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAACATTACGACTACTGGACGCGTTCCAATTTGTGGAGAAGCATGGTGAAGTGTGTCCGGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCTCCATTGATCACTGTGTTCGTGTTATGTGACTAGACATCTGTATGCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTCCATATAAACAACAT] consensusID : consensus_10106#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 287 fasta sequence [TCGGTCCGAGGCTGACCATGGTATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCA-CCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCG] [+] EMBL CD077955 [TCGGTCCGAGGCTGACCATGGTATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCA CCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCG] [-] EMBL CD181992 [ GGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCCGAAATCATCG ] consensusID : consensus_10106#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [GAAACATTACGACTACTGGACGCGTCCAATTTGTGGAGAGCATGGTGAATGTGTCGGTGACTGGAACGTGGCCAACATGGATAAGGTTATCAAATTAGCTTACADCGTCTCCATTGACACGTGTCCTGTATGTGACTAACACTGTATGCTGTGTACACATGAACTGGATGTAAATATTCATATACACACTTCATCAAAAAAAAAAACTCAGGGCCGTACCA] [-] EMBL SMAA28893 [GAAACATTACGACTACTGGACGCGTCCAATTTGTGGAGAGCATGGTGAATGTGTCGGTGACTGGAACGTGGCCAACATGGATAAGGTTATCAAATTAGCTTACADCGTCTCCATTGACACGTGTCCTGTATGTGACTAACACTGTATGCTGTGTACACATGAACTGGATGTAAATATTCATATACACACTTCATCAAAAAAAAAAACTCAGGGCCGTACCA] consensusID : consensus_10106#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [CAATCTTAAGAAAAAACATTACGACTACTGGACCCGTTCCAATTTTGTGGAGGAACATGGTGGAATTGTGTCCGGTGAACTGGAAACGTGGCNAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCCCCATTGAACACTGTGTCCGTGTTATNTGACTAGACATCTGTATG] [-] EMBL SMAA28892 [CAATCTTAAGAAAAAACATTACGACTACTGGACCCGTTCCAATTTTGTGGAGGAACATGGTGGAATTGTGTCCGGTGAACTGGAAACGTGGCNAACATGGGATAAAGGTTAATCAAAAGTAGACTTTACATCGTTCCCCATTGAACACTGTGTCCGTGTTATNTGACTAGACATCTGTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 ------------------------------------------------------------ consensus_10106#0 CACTTTGAGTTTGGTAATCACTGACCATGGTATTGTTGCCTAATAGACCTGCACCAGAAT 60 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 ------------------------------------------------------------ consensus_10106#0 TCAAAGGACAGGCTGTGATTAATGGTGAATTCAAAGAGATCTGTTTGAAGGATTATCGAG 120 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 ---------------GAGCCAGAATTCGGCACGAGGTTACATTCGTGTGTCCCACCGAAA 45 consensus_10106#0 GAAAATATGTTGTATTATTCTTCTATCCATCTGATTTCACATTCGTGTGTCCCACCGAAA 180 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 TCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCT 105 consensus_10106#0 TCATCGCGTTCAGTGATCAGGTGGAGGAGTTTAACAGTCGAAATTGTCAAGTGATCGCCT 240 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 GTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTG 165 consensus_10106#0 GTTCTACAGATTCTCAATACAGTCATCTTGCATGGGACAATTTGGATCGTAAATCGGGTG 300 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 GATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCAT 225 consensus_10106#0 GATTGGGTCATATGAAAATTCCTCTGTTGGCTGACCGTAAACAGGAGATTTCCAAAGCAT 360 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 ------------------------------------------------------------ consensus_10106#4 ------------------------------------------------------------ consensus_10106#1 ATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGA 285 consensus_10106#0 ATGGTGTATTCGATGAAGAGGATGGTAATGCATTCAGAGGTTTATTCATCATTGATCCGA 420 consensus_10106#2 ------------------------------------------------------------ consensus_10106#3 --------------------------------------------------------GAAA 4 consensus_10106#4 --------------------------------------------CAATCTTAAGAAAAAA 16 consensus_10106#1 ATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAA 345 consensus_10106#0 ATGGAATTCTACGTCAAATCACGATCAATGACAAGCCAGTTGGACGATCTGTAGATGAAA 480 consensus_10106#2 ---------------------------------------TCGGTCCGAGGCTGACCATGG 21 consensus_10106#3 CATTAC-GACTACTGGACGCGTCC---AATTTGTGGAG-AG--CATGGTGAA---TGTGT 54 consensus_10106#4 CATTAC-GACTACTGGACCCGTTCCA-ATTTTGTGGAGGAA--CATGGTGGAAT-TGTGT 71 consensus_10106#1 CATTAC-GACTACTGGACGCGTTCC--AATTTGTGGAGAAG--CATGGTGAAG--TGTGT 398 consensus_10106#0 CATTAC-GACTACTGGACGCGTTCC--AATTTGTGGAGAAG--CATGGTGAAG--TGTGT 533 consensus_10106#2 TATTGTTGCCTAATAGACCTGCACCAGAATTCAAAGGACAGGCTGTGATTAATGGTGAAT 81 *** * *** * *** * * * ** * * ** * * ** * consensus_10106#3 C---GGTGA-CTGGAA-CGTGGCCAACATGGA--TAAGGTTATC--AAATTAG--CTTAC 103 consensus_10106#4 CC--GGTGAACTGGAAACGTGGCNAACATGGGATAAAGGTTAATCAAAAGTAGACTTTAC 129 consensus_10106#1 CC--GGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTAC 456 consensus_10106#0 CC--GGTGAACTGGAAACGTGGCCAACATGGGATAAAGGTTAATCAAAAGTAGACTTTAC 591 consensus_10106#2 TCAAAGAGATCTGTTTGAAGGATTATCGAGGAAAATATGTTGTATTATTCTTCTATCCAT 141 * ** *** * * * ** * *** * * * consensus_10106#3 ADCGT-CTCCATTGA-------CAC-G---TGTCC-TGT-ATGTGACTA-ACA-CTGTAT 147 consensus_10106#4 ATCGTTCCCCATTGAA------CACTG---TGTCCGTGTTATNTGACTAGACATCTGTAT 180 consensus_10106#1 ATCGTTCTCCATTGAT------CACTG---TGTTCGTGTTATGTGACTAGACATCTGTAT 507 consensus_10106#0 ATCGTTCTTCATTGAT------CACTG---TGATCGTATTATGTGACTAGACATCTGTAT 642 consensus_10106#2 CTGATTTCACATTCGTGTGTCCCACCGAAATCATCGCGTTCAGTGATCAGGTGGAGGAGT 201 * **** *** * * * * *** * * * consensus_10106#3 GCTGT-GTACACATGAACTGGATGTAAATATTCATATACACACTTCATCAAAAAAAAAAA 206 consensus_10106#4 G----------------------------------------------------------- 181 consensus_10106#1 GCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTC-CATATAAACAACAT------ 560 consensus_10106#0 GCTGTTGTACACATGAATCTGTAGTGTGAAATTATTTTC-CATATAAACAACATCTCACA 701 consensus_10106#2 TTAACAGTCGAAATTGTCAAGTGATCGCCTGTTCTACAGATTCTCAATACAGTCATCTTG 261 consensus_10106#3 CTCAGGGCCGTACCA------------- 221 consensus_10106#4 ---------------------------- consensus_10106#1 ---------------------------- consensus_10106#0 TTCAAAAAAAAAAAACAAAACAAAAGAA 729 consensus_10106#2 CATGGGACAATTTGGATCGTAAATCG-- 287 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||