These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 988 fasta sequence [ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGAAGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCTTGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAGCAAAGCTACAGATCTTGAGCATTCTTTGGCCGTGTCTCAAAAAGAGTGCATTCGCCTTCGTCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAAGCAAGTGGCATCAGAGGGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA-GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG-AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGACTCTTTTGAGTCTATCGATACTGTTGATCCTGATAAAAATTCATTGAAACGACTGGATGCTGTTAATTGTAAAGAAAATAATNTCGAAACTGCCCTACAG] [-] EMBL CD193718 [ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGAAGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGA ] [-] EMBL CD193649 [ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGAAGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGA ] [+] EMBL CD152532 [ CGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCTTGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAGCAAAGCTACAGATCTTGA ] [+] EMBL CD152531 [ CGACTTTTGGAGAGGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCTTGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAGCAAAGCTACAGATCTTGAGCATTCTTTGGCCGTGTCTCAAAAAGAGTGCATTCGCCTTCGTCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAA ] [-] EMBL CD147062 [ ATTCGCCTTCGTCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAAGCAAGTGGCATCAGAGGGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCT ] [+] EMBL CD182979 [ GGAGTCGAAGCAAGTGGCATCAGA GGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAGAAATCA ] [+] EMBL CD180949 [ GGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAGAGTTTTCGACCAGTTTTTATATTCTGACCATATTAACAGATAATAGACAAGCCCATGATAATCATAACAGAGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAT AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATA ] [+] EMBL CD192364 [ GATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAACCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGACTCTTTTGAGTCTATCGATACTGTTGATCCTGATAAAAATTCATTGAAACGACTGGATGCTGTTAATTGTAAAGAAAATAATNTCGAAACTGCCCTACAG] [+] EMBL CD192828 [ GATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAGTTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGATTCTTTTGAGTCTATTGATACTGTTGATCCTGANTAAAATTCATTGAAACGACTGGATGCTGTTAATTGTAAAGAAAATAATTTCGAAACTGCCCT ] [-] EMBL CD181310 [ AGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTG ] consensusID : consensus_10108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [AAGAGCAGCCAGTGTTGGTCCTTACCTGTCAGCGAGATTCACATCCTTTTCAGGACCGCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGTTTCGGAGTAGATGTCGTTGAACATGATACAACTCACGGCTGCATCATAGCTCAAGTTGCTTTGTATCATCCCAATGGAGCAGAAGCAAAACAAAGTAGCGTTGACTATGTCAGTAATAATGATGTTTTGACTGGTATCGAGACACTCCAT] [+] EMBL CD184748 [AAGAGCAGCCAGTGTTGGTCCTTACCTGTCAGCGAGATTCACATCCTTTTCAGGACCGCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGTTTCGGAGTAGATGTCGTTGAACATGATACAACTCACGGCTGCATCATAGCTCAAGTTGCTTTGTATCATCCCAATGGAGCAGAAGCAAAACAAAGTAGCGTTGACTATGTCAGTAATAATGATGTTTTGACTGGTATCGAGACACTCCAT] consensusID : consensus_10108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence [ATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCCGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATAGAACAAATAATAGACAAGCCCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGT] [-] EMBL CD157292 [ATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCCGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATAGAACAAATAATAGACAAGCCCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGT] [+] EMBL CD063244 [ GTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGA 60 consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 AGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGA 120 consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 TCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCT 180 consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 TGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAG 240 consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 CAAAGCTACAGATCTTGAGCATTCTTTGGCCGTGTCTCAAAAAGAGTGCATTCGCCTTCG 300 consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 TCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAA 360 consensus_10108#1 ------------------------------------------------------------ consensus_10108#2 -----------------------------------------------ATGTGAAGGTCGA 13 consensus_10108#0 GCAAGTGGCATCAGAGGGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGA 420 consensus_10108#1 ------------------------------AAGAGCAGCCAGTG-TTGGTCCTTACCTGT 29 consensus_10108#2 AACTGACCAACTTAAAGATGAAAAAGTGCCCGGAAAAGTTTTCGACCAGTTTTTATATTC 73 consensus_10108#0 AACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTC 480 ** ** * ** *** * consensus_10108#1 CAGCGAGATTCACATCCTTTTCAGGACCGCATAATTATACTAAATGAGATTATCAAAGTT 89 consensus_10108#2 TGACCATAGA-ACAAATAATAGACAAGCCCATAATTATACTAAATGAGATTATCAAAGTT 132 consensus_10108#0 TGACCATAGA-ACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACA 539 * * * *** * * * * *** ** ** *** * *** ** ** consensus_10108#1 GGACGTTCAGTGGCCCGCGCCAAACC--TACGAAAAACAATGCTATCTTTGACTGCAA-- 145 consensus_10108#2 GGACGTTCAGTGGCCCGCGCCAAACC--TACGAAAAACAATGCTATCTTTGACTGCAA-- 188 consensus_10108#0 TTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAGAATCATGATGATAAGT 599 * * *** * * * ****** * ** * *** ** consensus_10108#1 --AGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGT 203 consensus_10108#2 --AGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGT 246 consensus_10108#0 TAAATAATATCAACGGACGATTCGGT-ATGCAAAATAATTTCGATCTATTAAAGTCATCG 658 * * * **** ** * * ** * ** **** ** ** consensus_10108#1 GATACAAATAGTAGCAATGGAACTTTCGT-CAATAA--CACAA-GAATAGTAAAA---AA 256 consensus_10108#2 GATACAAATAGTAGCAATGGAACTTTCGT-CAATAA--CACAA-GAATAGTAAAA---AA 299 consensus_10108#0 GAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCAT 718 ** * *** * * ** * * * *** * *** * **** **** * consensus_10108#1 AAATGACGAAGATTT-TGCTGACCGT--GAGATATT-----TTCCGGTGATATAATTCGT 308 consensus_10108#2 AAATGACGAAGATTT-TGCTGACCGT--GAGATATT-----TTCCGGTGATATAATTCGT 351 consensus_10108#0 AATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAA 778 ** *** * ** * * * ** * ** **** ** * * * ** ** consensus_10108#1 TT---CGGAGTAGATGTCGTTGAAC--ATGATACAACTCACGGCTGCATCATAGCTCAAG 363 consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 TTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAA 838 consensus_10108#1 TTGCTTTGTATCATCCCAATGGAG-CAGAAGCAAAACAAAGTAGCGTTGACTATGTCAGT 422 consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 TCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGACTCTTTTGAG 898 consensus_10108#1 AATAATGATGTT-TTGACTGGTATCGAGACACTCCAT----------------------- 458 consensus_10108#2 ------------------------------------------------------------ consensus_10108#0 TCTATCGATACTGTTGATCCTGATAAAAATTCATTGAAACGACTGGATGCTGTTAATTGT 958 consensus_10108#1 ------------------------------ consensus_10108#2 ------------------------------ consensus_10108#0 AAAGAAAATAATNTCGAAACTGCCCTACAG 988 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||