These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 565 fasta sequence [TAATCATTATGAATAAAAGGAATGACAATCAATTGAAGGACATGAAATATATATATATTAATAAGCAGATACAAACAAGTAAGCTTACACAAAAATCATTTCATACCAAGCATATATGGTATATATATGTATACTCCTTATGCTTTGAAGGACTTTACAATCCAGAAAATAGGTAATTACTATCATTGAAGAAGGAGTAGTAGTCGTAGTAGCAGTAGTAGGAGGAGTAGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAGT] [+] EMBL CD153513 [TAATCATTATGAATAAAAGGGATGACAATCAATTGAAGGACGTGAAATATATATATATTAATAAGCAGATACAAACAAGTAAGCTTACACAAAAATCATTTCATACCAAGCATATATGGTATATATATGTATACTCCTTATGCTTTGAAGGACTTTACAATCCAGAAAATAGGTAATTACTATCATTGAAGAAGGAGTAGTAGTCGTAGTAGCAGTAGTAGGAGGAGTAGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATT ] [+] EMBL CD153556 [TAATCATTATGAATAAAAGGAATGACAATCAATTGAAGGACATGAAATATATATATATTAATAAGCAGATACAAACAAGTAAGCTTACACAAAAATCATTTCATACCAAGCATATATGGTATATATATGTATACTCCTTATGCTTTGAAGGACTTTACAATCCAGAAAATAGGTAATTACTATCATTGAAGAAGGAGTAGTAGTCGTAGTAGCAGTAGTAGGAGGAGTAGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAACCGGACACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTA ] [+] EMBL CD153538 [TAATCATTATGAATAAAAGGAATGACAATCAATTGAAGGACATGAA ATATATATATTAATAAGCAGATACAAACAAGTAAGCTTACACAAAAATCATTTCATACCAAGCATATATGGTATATATATGTATACTCCTTATGCTTTGAAGGACTTTACAATCCAGAAAATAGGTAATTACTATCATTGAAGAAGGAGTAGTAGTCGTAGTAGCAGTAGTAGGAGGAGTAGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAAC ] [+] EMBL CD153491 [TAATCATTATGAATAAAAGGAATGACAATCAATTGAAGGACATGAAATATATATATATTAATAAGCAGATACAAACAAGTAAGCTTACACAAAAATCATTTCATACCAAGCATATATGGTATATATATGTATACTCCTTATGCTTTGAAGGACTTTACAATCCAGAAAATAGGTAATTACTATCATTGAAGAAGGAGTAGTAGTCGTAGTAGCAGTAGTAGGAGGAGTAGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCGCATTACAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGC ] [+] EMBL CD153540 [TAATCATTATGAATAAAAGGAATGACAATCAATTGAAGGACATGAAATATATATATATTAATAAGCAGATACAAACAAGTAAGCTTACACAAAAATCATTTCATACCAAGCATATATGGTATATATATGTATACTCCTTATGCTTTGAAGGACTTTACAATCCAGAAAATAGGTAATTACTATCATTGAAGAAGGAGTAGTAGTCGTAGTAGCAGTAGTAGGAGGAGTAGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTA ] [+] EMBL CD195271 [ AGTAGTAGGAGGAGGAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGGAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAG ] [-] EMBL CD144723 [ GAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTCAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTGGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAGT] [-] EMBL CD144810 [ GAGTACTAGTAGCTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAGT] [-] EMBL CD144825 [ GAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACCTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAGT] [-] EMBL CD144756 [ GAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAGT] [-] EMBL CD144806 [ GAGTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAGT] [+] EMBL CD088359 [ GTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTTAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCGAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAG ] [+] EMBL CD088324 [ GTACTAGTAGTTAGTTAGTTATGCATTCAAATCAAATTTAGCGTCATGTGTTCATTTGCCAATCACATTAAAACAGGTTAGAAGGAACACGAGGTTATTGAAGAGAAGGAAAAAGGAAACGAAACCGAATACAATCGCATAAACACTTTGTATAACACATGGTCTATTTCCTTTCAAAAGTGAGAATAACAATCACTTAACAAAACATATAGACAGAACGGTAGTTATTGGAAGCGCTTGTTCACTTTTTCATATAGTAGACATTACAGATCAAAAAGACTTATTCTTATTGCTTTCTTTTTATACTAGGAGACGATTAG ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||