These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 451 fasta sequence [TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC-TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC-AAACCATGTC-ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAA] [-] EMBL CD201185 [TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGT ] [+] EMBL AI976456 [ TTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTACAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAA] [+] EMBL BF936319 [ TTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCACAAAGAA ] [-] EMBL CD163016 [ ACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCGGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGGAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTC ] [+] EMBL CD126395 [ AGATGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCgggt ] [+] EMBL CD135960 [ GAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAA ] [+] EMBL CD193378 [ GAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAACGCAATGGCGTCAAAACCATGTCAATCGTT CCTTGCACATTGTTCGGTCATAAGACAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAA ] [-] EMBL CD140961 [ AAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAGCCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGT ] [-] EMBL CD126544 [ GCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTG ] [-] EMBL BG930580 [ TCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCCACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCATATTGTTCGGTCATAAGAAAAGCCATACAACAAATGCAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGTCCGCCTAGCATACCAAATTCTGAAAGAc ] [+] EMBL CD166198 [ gcgACAATATTGCCCGTGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTT ] consensusID : consensus_10115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 147 fasta sequence [CTACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAAATACATAAT] [+] EMBL CD079037 [CTACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAAATACATAA ] [-] EMBL CD073489 [ TACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAGATGTTTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTTTGAAAGAGGGTCATTAATACATCAAATACATAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10115#0 TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCA 60 consensus_10115#1 ------------------------------------------------------------ consensus_10115#0 AAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACG 120 consensus_10115#1 ------------------------------------------------------------ consensus_10115#0 TGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCCTGACTGGTTTTACGTTC 180 consensus_10115#1 ------------------------------------------------------------ consensus_10115#0 GATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCA 240 consensus_10115#1 ------------------------------------------------------------ consensus_10115#0 AAGCGTTCTCCAGAAAGAAGCGCAATGGCGTCAAACCATGTCATCGTTCCCTTGCACATT 300 consensus_10115#1 ------------------------------------------------------------ consensus_10115#0 GTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTG 360 consensus_10115#1 ------CTACATGATTAACTTTGTAGCTTAT-------TATTAACTCTTTGAAAATTTTA 47 * * ** * * * * * ** * * * * * * ** * consensus_10115#0 AAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACC 420 consensus_10115#1 CTTTCAGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACC 107 ****************************************************** consensus_10115#0 AAATTCTGAAAGAGCGTCATTAATACATCAA--------- 451 consensus_10115#1 AAATTCTGAAAGAGCGTCATTAATACATCAAATACATAAT 147 ******************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||