cluster # 10115

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Schistosoma mansoni
cluster # 10115 cluster # 10115 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10115#0 length = 451 sequences # 11

consensus_10115#1 length = 147 sequences # 2

consensusID : consensus_10115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 451
fasta sequence

                              [TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC-TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC-AAACCATGTC-ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAA]

[-] EMBL CD201185             [TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGT                                                                                                                                                                                                                                                                            ]
[+] EMBL AI976456             [   TTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTACAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAA]
[+] EMBL BF936319             [   TTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCACAAAGAA                                                                                                                                                                                                  ]
[-] EMBL CD163016             [                                                      ACATCAAAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCGGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGGAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTC                                                                         ]
[+] EMBL CD126395             [                                                                                 AGATGACCGGGAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCgggt                                                                                                                                           ]
[+] EMBL CD135960             [                                                                                           GAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAA                                                                                                ]
[+] EMBL CD193378             [                                                                                           GAAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAACGCAATGGCGTCAAAACCATGTCAATCGTT CCTTGCACATTGTTCGGTCATAAGACAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAA                                                                                                ]
[-] EMBL CD140961             [                                                                                            AAGGTAAGGCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAGCCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTGTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGT                                                                                            ]
[-] EMBL CD126544             [                                                                                                    GCTACCCGATTGGACGGACGTGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCACATTG                                                                                                                                                      ]
[-] EMBL BG930580             [                                                                                                                           TCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCC TGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCCACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTTGCATATTGTTCGGTCATAAGAAAAGCCATACAACAAATGCAGGCACTTGGAATGTGTCAGAAGCGTGAAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGTCCGCCTAGCATACCAAATTCTGAAAGAc                 ]
[+] EMBL CD166198             [                                                                                                                                                    gcgACAATATTGCCCGTGACTGGTTTTACGTTCGATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCAAAGCGTTCTCCAGAAAGAAGCGCAATGGCGTC AAACCATGTC ATCGTTCCCTT                                                                                                                                                              ]




>consensus_10115#0
TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCA
AAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACG
TGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCCTGACTGGTTTTACGTTC
GATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCA
AAGCGTTCTCCAGAAAGAAGCGCAATGGCGTCAAACCATGTCATCGTTCCCTTGCACATT
GTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTG
AAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACC
AAATTCTGAAAGAGCGTCATTAATACATCAA

consensusID : consensus_10115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 147
fasta sequence

                              [CTACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAAATACATAAT]

[+] EMBL CD079037             [CTACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGAGCGTCATTAATACATCAAATACATAA ]
[-] EMBL CD073489             [ TACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAGATGTTTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTTTGAAAGAGGGTCATTAATACATCAAATACATAAT]




>consensus_10115#1
CTACATGATTAACTTTGTAGCTTATTATTAACTCTTTGAAAATTTTACTTTCAGTGGAAG
ATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACCAAATTCTGAAAGA
GCGTCATTAATACATCAAATACATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10115#0      TAGTTGCTGGTAGCATGGCTCCTGTCTCCGTGAAAGACGTAGATGGACACCTTTACATCA 60
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      AAGCACTGGCGCAGTTTCTCAAGAAGACCGGGAAGGTAAGGCTACCCGATTGGACGGACG 120
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      TGGTCAAACTATCATCAGCCAACCAGTTAGCACCATATAACCCTGACTGGTTTTACGTTC 180
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GATGTGCCGCTATACTCCGGCATTTGTACATCAGGCCTACTGGCTTGACTGGTTTAAGCA 240
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      AAGCGTTCTCCAGAAAGAAGCGCAATGGCGTCAAACCATGTCATCGTTCCCTTGCACATT 300
consensus_10115#1      ------------------------------------------------------------
                                                                                   

consensus_10115#0      GTTCGGTCATAAGAAAAGCCATACAACAAATGGAGGCACTTGGAATGTGTCAGAAGCGTG 360
consensus_10115#1      ------CTACATGATTAACTTTGTAGCTTAT-------TATTAACTCTTTGAAAATTTTA 47
                               * * **  * *  *  * *  **         *  * * * * * **   * 

consensus_10115#0      AAAATGGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACC 420
consensus_10115#1      CTTTCAGTGGAAGATGTCTTACATCAACTGGAAGACGTGATTTAGACCGCCTAGCATACC 107
                             ******************************************************

consensus_10115#0      AAATTCTGAAAGAGCGTCATTAATACATCAA--------- 451
consensus_10115#1      AAATTCTGAAAGAGCGTCATTAATACATCAAATACATAAT 147
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