|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [GGGCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTAATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATAATATATAGGAATCACTCAGAAGAAAATTTACAAAATCTAAAAAACATGTTTCGTACGACCAACTGGGAATTATTTACAGATGACTCAATAGAAAACACAACGAATGTTATCACCTCTTATCTTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGATCGACTTACATCTCCACAACTAAAACGACTACGGAGGGTAAAAGAAAGGATGTACAA-GGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGATCAAATAAACCAAGAGATTAGACGTCTCAACTATGTGTTCACTCAAAAACTTCTATCTTGCAGAAGCTCTCCAAGTATGTGAAAACTCTTTAAAGAAATTACAGGGGACAAGCAGAATAGAAGCGATAACCAGCTAAATGTTTGTGACTTAAATAAGTCCTTTATTCGTCAGTCATCTGACATCATGCTCCCTATATCCAAGGGTTTGAAGAATAATTGTGTCCCCAGTTTCACTGAAAATGATGT] [+] EMBL CD159995 [GGGCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTAATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATAATATATAGGAATCACTCAGAAGAAAATTTACAAAATCTAAAAAACATGTTTCGTACGACCAACTGGGAATTATTTACAGATGACTCAATAGAAAACACAACGAATGTTATCACCTCTTATCTTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGATCGACTTACATCTCCACAACTAAAACGACTACGGAGGGTAAAAGAAAGGATGTACAA GGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGATCAAATAAACCAAGAGATTAGACGTCTCAACTATGTGTTCACTCAAAAACTTCTATCTTGCAGAAGCTCTC ] [+] EMBL CD113201 [ AAGGATGTACAAGGGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGACCAAATAAACCAAGAGATTAGACGTCTCAACTCTGTGTTTACTCAAAAACTCCTATCTTGTAAAAGCTCTCCAAGTATGTGAAAACTCTTTAAAGAAATTACAGGGGACAAGCAGAATAGAAGCGATAACCAGCTAAATGTTTGTGACTTAAATAAGTCCTTTATTCGTCAGTCATCTGACATCATGCTCCCTATATCCAAGGGTTTGAAGAATAATTGTGTCCCCAGTTTCACTGAAAATGATGT] consensusID : consensus_10124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [ATTTTAGCTTTAGGAAAATCGGTAACTCTCAGTCTGAATTGTGTTGAAACTATGTATTATTGACTGAAGTCTTAAAAGCACNAAAATTGTGTTGTTTAAGACATAATTAGTTGTTTACTGGGAGATGTTCAACACTTTACTACTGAAGTTCGTAAGTTAAATGGTCAAATAAACCAAGAGATTAGACGTCTCAACTCTGTGTTTACTCAAAAACTCCTATCTTGTAAAAGCTCTCCAAGTATGTGGAAACTCTTTAAAGAAATTACAGGGAACAGGAAGACTAGAAGCGATAACCAGCCAAATGTTTGTGACTTAAATAAGTCCTTTATACGTCAGTCATCTGACATAATGCTCCCTATACCAAGAGTCTGAAGAATAATTGAGTTTCCAGTTTCACTGAAAATGATGTCGGAAAATGCCCTCCAGTCTCCTTGATTTCATCCCCAATGTTTAGGACCCTAAATGGTATCCCCAAACCTTCCTTTTTAATAAAATGGCCTGATGTTCTATGTTATCCATTAACGAATATCTTTAACAGATCTTTCTCAACTAATGTCTTCCCG] [-] EMBL CD135769 [ATTTTAGCTTTAGGAAAATCGGTAACTCTCAGTCTGAATTGTGTTGAAACTATGTATTATTGACTGAAGTCTTAAAAGCACNAAAATTGTGTTGTTTAAGACATAATTAGTTGTTTACTGGGAGATGTTCAACACTTTACTACTGAAGTTCGTAAGTTAAATGGTCAAATAAACCAAGAGATTAGACGTCTCAACTCTGTGTTTACTCAAAAACTCCTATCTTGTAAAAGCTCTCCAAGTATGTGGAAACTCTTTAAAGAAATTACAGGGAACAGGAAGACTAGAAGCGATAACCAGCCAAATGTTTGTGACTTAAATAAGTCCTTTATACGTCAGTCATCTGACATAATGCTCCCTATACCAAGAGTCTGAAGAATAATTGAGTTTCCAGTTTCACTGAAAATGATGTCGGAAAATGCCCTCCAGTCTCCTTGATTTCATCCCCAATGTTTAGGACCCTAAATGGTATCCCCAAACCTTCCTTTTTAATAAAATGGCCTGATGTTCTATGTTATCCATTAACGAATATCTTTAACAGATCTTTCTCAACTAATGTCTTCCCG] consensusID : consensus_10124#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 531 fasta sequence [ATCTTGTGCGTACTTAGTTGGGGGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCACTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCTATGAGCATCAGGAGAGATTATGTGTTTTTTTAGATGACCTGGACATTGTTAGAAGTAATGTAAATATAAATTTTGTATTGGGTGAGCAGTCGAGATCTACATTATTANGCTGGCTACTGTAGGTGG] [+] EMBL CD155930 [ATCTTGTGCGTACTTAGTTGGGAGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCGCTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCCTATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGGTGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCT ] [-] EMBL CD156332 [ TCTTGTGCGTACTTAGTTGGGGGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCGCTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCACCCGCACTGTGTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCCTATTTATATCTACAAGCGAGATGCAAGGTAGTGACGGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCTA ] [+] EMBL CD159228 [ AGTTGGGGGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCATTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAGCCGCACTGTCTAAATACCGCTCACAACGTGTGATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGAC ] [+] EMBL CD121093 [ GTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCATTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAGCCGCACTGTCTAAATACCGCTCACAACGTGTGATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGAC ] [+] EMBL CD121722 [ GTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCATTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAGCCGCACTGTCTAAATACCGCTCGCAACGTGTGATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGAC ] [+] EMBL CD194797 [ GGCTTATGTGCACTCTGTTGGCCACTACACAGGATGACCGATTGTGGATTTACTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAATGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCTTATTGATATCTACAAGCGAGATGC ] [-] EMBL CD156321 [ gCTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCCTATTTATATCTACAAGCGAGATGCAAGGTAGTGACGGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCTA ] [+] EMBL CD195037 [ GGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGTGTGGGCTGTCAAATGATGTCAGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCGTGTCCAAGTACATGGTGCACGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCGCATTATTCGCGTGAGTTGTGGATTTAGATCTTTTGCACGTGCTATGAGCATCAGGAGAGATTATGTGTTTTTTTAGATGACCTGGACATTGTTAGAAGTAATGTAAATATAAATTTTGTATTGGGTGAGCAGTCGAGATCTACATTATTANGCTGGCTACTGTAGGTGG] consensusID : consensus_10124#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 346 fasta sequence [ACGGCTCACGGAACTTTGTATTTTTATATTATATTTTGTACAGTTGTTAGTGGAATTCATCAATGGGAATGAATTTCGTTTAATAGATGTTTCATTTTTTGGACTTGAATGATTATTATTTGATAACTTGGATGAACAATTAGTTTCATTGCAACTATGTGGTAAATGAGATTCACATGCTAGAAAACACCACTGATGTGATCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGAACTGAAAATGTTTAGTGTAGTGAAAAGTGTTAATTACATCTTCTC] [+] EMBL CD167215 [ACGGCTCACGGAACTTTGTATTTTTATATTATATTTTGTACAGTTGTTAGTGGAATTCATCAATGGGAATGAATTTCGTTTAATAGATGTTTCATTTTTTGGACTTGAATGATTATTATTTGATAACTTGGATGAACAATTAGTTTCATTGCAACTATGTGGTAAATGAGATTCACATGCTAGAAAACACCACTGATGTGATCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGAACTGAAAATGTTTAGTGTAGTGAAAAGTGTTAATTACATCTTCTC] [-] EMBL CD167391 [ atTTATATTTTGTACAGTTGTTAGTGGAATTCAACAATGGGAATGAATTTCGTTTAATAGATGTTTCATTTTTTGGACTTGAATGATTATTATTTGATAACTTGGATGAACAATTAGTTTCATTGCAACTATGTGGTAAATGAGATTCACATGCTAGAAAACACCACTGATGTGATCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGAACTGAAAATGTTTAGTGTAGTGAAAAGTGTTAATTACATCTTCc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10124#0 GGGCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACA 60
consensus_10124#1 ------------------------------------------------------------
consensus_10124#3 ------------------------------------------------------------
consensus_10124#2 ------------------------------------------------------------
consensus_10124#0 ACGTGTAATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATT 120
consensus_10124#1 ------------------------------------------------------------
consensus_10124#3 ------------------------------------------------------------
consensus_10124#2 --ATCTTGTGCGTACTTAGTTGGGGGATAA-GGTATATGTTTGGGTGAGTAGTCGAGATC 57
consensus_10124#0 TATAATATATAGGAATCACTCAGAAGAAAATTTACAAAATCTAAAAAACATGTTTCGTAC 180
consensus_10124#1 ------------------------------------------------------------
consensus_10124#3 ------------------------------------------------------------
consensus_10124#2 TACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCACTACACAG 117
consensus_10124#0 GACCAACTGGGAATTATTTACAGATGACTCAATAGAAAACACAACGAATGTTATCACCTC 240
consensus_10124#1 -------------------------------ATTTTAG-CTTTAGGAAAATCGGTAACTC 28
consensus_10124#3 -----------------------------------ACGGCTCACGGAACTTTGT--ATTT 23
consensus_10124#2 GATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTC 177
* * *
consensus_10124#0 TTATCTTAAATTCTGTT--TTGATATTTGCTGTCCT-ACCGAAACCTTCTTTTTAAGTTT 297
consensus_10124#1 TCAGTCTGAATT--GTG--TTGAAACTA--TGTATT-ATTGA---------CTGAAGTCT 72
consensus_10124#3 TTATATTATATTTTGTA--CAGTTGTTAGTGGAATTCATCAATGGGAATGAATTTCGTTT 81
consensus_10124#2 ACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCTT 237
* * * ** * * * *
consensus_10124#0 TGATCGACTTACATCTCCACAACTAA--AACGACTACGGAGGGTAAAAGAAAGGATGTAC 355
consensus_10124#1 TAAAAGCACNAAAATTGTGTTGTTTA--AGACATAATTAGTTGTTTACTGGGAGATGTTC 130
consensus_10124#3 AATAGATGTTTCATTTTTTGGACTTG--AATGATTATTATTTGATAACTT--GGATGAAC 137
consensus_10124#2 ATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCATGCCCAAGTACATGGTGCAT 297
* * * * * **
consensus_10124#0 AAGGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGATCAAATAAACCAAGAGATT-AG 414
consensus_10124#1 AAC----ACTTTACTACTGAAGTTCGTAAGTTAAATGGTCAAATAAACCAAGAGATT-AG 185
consensus_10124#3 AAT-----TAGTTTCATTGCAACT-ATGTGGTAAATG-------AGATTCACATGCT-AG 183
consensus_10124#2 GTCTAGTGTAGCTGTAGGAAGATC--AGAGTATGATG--CAGACTGATCAGTGTGTTTAG 353
* * *** * * **
consensus_10124#0 ACGTCTCAAC-T-ATGTGT-TCACTCAAAAACTTCTATCTTGCAGAAGC-TCTCCAAGTA 470
consensus_10124#1 ACGTCTCAAC-T-CTGTGT-TTACTCAAAAACTCCTATCTTGTAAAAGC-TCTCCAAGTA 241
consensus_10124#3 AAAACACCAC-TGATGTGA-TCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCC 241
consensus_10124#2 AAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGT-GCTATGAGCA 412
* * ** * * * * * * * * *
consensus_10124#0 TGTGAAAACTCTTTAAAGAAATTACAGGGGACAAGCAGAATAGAAGCGATAACCAGCTAA 530
consensus_10124#1 TGTGGAAACTCTTTAAAGAAATTACAGGGAACAGGAAGACTAGAAGCGATAACCAGCCAA 301
consensus_10124#3 TACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGA 301
consensus_10124#2 TCAGGAGAGATTATGT-GTTTTTTTAGATGACCTGGACATTGTTAGAAGTAATG---TAA 468
* * * * * ** * ** * * * ** *
consensus_10124#0 ATGTTTGTGACTTAAATAAGTCCTTTATTCGTCAGTCATCTGACATCATGCTCCCTATAT 590
consensus_10124#1 ATGTTTGTGACTTAAATAAGTCCTTTATACGTCAGTCATCTGACATAATGCTCCCTATA- 360
consensus_10124#3 ACTGAAAATGTTTAGTGTAGTGAA--AAGTGTTAATTACATCTTCTC------------- 346
consensus_10124#2 ATATAAAT--TTTGTATTGGGTGAGCAGTCGAGATCTACAT--TATTANGCTGGCTACTG 524
* ** * * * * * * *
consensus_10124#0 CCAAGGGTTTGAAGAATAATTGTGTCCCCAGTTTCACTGAAAATGATGT----------- 639
consensus_10124#1 CCAAGAGTCTGAAGAATAATTGAGTTTCCAGTTTCACTGAAAATGATGTCGGAAAATGCC 420
consensus_10124#3 ------------------------------------------------------------
consensus_10124#2 TAGGTGG----------------------------------------------------- 531
consensus_10124#0 ------------------------------------------------------------
consensus_10124#1 CTCCAGTCTCCTTGATTTCATCCCCAATGTTTAGGACCCTAAATGGTATCCCCAAACCTT 480
consensus_10124#3 ------------------------------------------------------------
consensus_10124#2 ------------------------------------------------------------
consensus_10124#0 ------------------------------------------------------------
consensus_10124#1 CCTTTTTAATAAAATGGCCTGATGTTCTATGTTATCCATTAACGAATATCTTTAACAGAT 540
consensus_10124#3 ------------------------------------------------------------
consensus_10124#2 ------------------------------------------------------------
consensus_10124#0 -----------------------
consensus_10124#1 CTTTCTCAACTAATGTCTTCCCG 563
consensus_10124#3 -----------------------
consensus_10124#2 -----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||