These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [GGGCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTAATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATAATATATAGGAATCACTCAGAAGAAAATTTACAAAATCTAAAAAACATGTTTCGTACGACCAACTGGGAATTATTTACAGATGACTCAATAGAAAACACAACGAATGTTATCACCTCTTATCTTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGATCGACTTACATCTCCACAACTAAAACGACTACGGAGGGTAAAAGAAAGGATGTACAA-GGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGATCAAATAAACCAAGAGATTAGACGTCTCAACTATGTGTTCACTCAAAAACTTCTATCTTGCAGAAGCTCTCCAAGTATGTGAAAACTCTTTAAAGAAATTACAGGGGACAAGCAGAATAGAAGCGATAACCAGCTAAATGTTTGTGACTTAAATAAGTCCTTTATTCGTCAGTCATCTGACATCATGCTCCCTATATCCAAGGGTTTGAAGAATAATTGTGTCCCCAGTTTCACTGAAAATGATGT] [+] EMBL CD159995 [GGGCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTAATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATAATATATAGGAATCACTCAGAAGAAAATTTACAAAATCTAAAAAACATGTTTCGTACGACCAACTGGGAATTATTTACAGATGACTCAATAGAAAACACAACGAATGTTATCACCTCTTATCTTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGATCGACTTACATCTCCACAACTAAAACGACTACGGAGGGTAAAAGAAAGGATGTACAA GGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGATCAAATAAACCAAGAGATTAGACGTCTCAACTATGTGTTCACTCAAAAACTTCTATCTTGCAGAAGCTCTC ] [+] EMBL CD113201 [ AAGGATGTACAAGGGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGACCAAATAAACCAAGAGATTAGACGTCTCAACTCTGTGTTTACTCAAAAACTCCTATCTTGTAAAAGCTCTCCAAGTATGTGAAAACTCTTTAAAGAAATTACAGGGGACAAGCAGAATAGAAGCGATAACCAGCTAAATGTTTGTGACTTAAATAAGTCCTTTATTCGTCAGTCATCTGACATCATGCTCCCTATATCCAAGGGTTTGAAGAATAATTGTGTCCCCAGTTTCACTGAAAATGATGT] consensusID : consensus_10124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [ATTTTAGCTTTAGGAAAATCGGTAACTCTCAGTCTGAATTGTGTTGAAACTATGTATTATTGACTGAAGTCTTAAAAGCACNAAAATTGTGTTGTTTAAGACATAATTAGTTGTTTACTGGGAGATGTTCAACACTTTACTACTGAAGTTCGTAAGTTAAATGGTCAAATAAACCAAGAGATTAGACGTCTCAACTCTGTGTTTACTCAAAAACTCCTATCTTGTAAAAGCTCTCCAAGTATGTGGAAACTCTTTAAAGAAATTACAGGGAACAGGAAGACTAGAAGCGATAACCAGCCAAATGTTTGTGACTTAAATAAGTCCTTTATACGTCAGTCATCTGACATAATGCTCCCTATACCAAGAGTCTGAAGAATAATTGAGTTTCCAGTTTCACTGAAAATGATGTCGGAAAATGCCCTCCAGTCTCCTTGATTTCATCCCCAATGTTTAGGACCCTAAATGGTATCCCCAAACCTTCCTTTTTAATAAAATGGCCTGATGTTCTATGTTATCCATTAACGAATATCTTTAACAGATCTTTCTCAACTAATGTCTTCCCG] [-] EMBL CD135769 [ATTTTAGCTTTAGGAAAATCGGTAACTCTCAGTCTGAATTGTGTTGAAACTATGTATTATTGACTGAAGTCTTAAAAGCACNAAAATTGTGTTGTTTAAGACATAATTAGTTGTTTACTGGGAGATGTTCAACACTTTACTACTGAAGTTCGTAAGTTAAATGGTCAAATAAACCAAGAGATTAGACGTCTCAACTCTGTGTTTACTCAAAAACTCCTATCTTGTAAAAGCTCTCCAAGTATGTGGAAACTCTTTAAAGAAATTACAGGGAACAGGAAGACTAGAAGCGATAACCAGCCAAATGTTTGTGACTTAAATAAGTCCTTTATACGTCAGTCATCTGACATAATGCTCCCTATACCAAGAGTCTGAAGAATAATTGAGTTTCCAGTTTCACTGAAAATGATGTCGGAAAATGCCCTCCAGTCTCCTTGATTTCATCCCCAATGTTTAGGACCCTAAATGGTATCCCCAAACCTTCCTTTTTAATAAAATGGCCTGATGTTCTATGTTATCCATTAACGAATATCTTTAACAGATCTTTCTCAACTAATGTCTTCCCG] consensusID : consensus_10124#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 531 fasta sequence [ATCTTGTGCGTACTTAGTTGGGGGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCACTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCTATGAGCATCAGGAGAGATTATGTGTTTTTTTAGATGACCTGGACATTGTTAGAAGTAATGTAAATATAAATTTTGTATTGGGTGAGCAGTCGAGATCTACATTATTANGCTGGCTACTGTAGGTGG] [+] EMBL CD155930 [ATCTTGTGCGTACTTAGTTGGGAGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCGCTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCCTATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGGTGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCT ] [-] EMBL CD156332 [ TCTTGTGCGTACTTAGTTGGGGGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCGCTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCACCCGCACTGTGTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCCTATTTATATCTACAAGCGAGATGCAAGGTAGTGACGGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCTA ] [+] EMBL CD159228 [ AGTTGGGGGATAAGGTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCATTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAGCCGCACTGTCTAAATACCGCTCACAACGTGTGATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGAC ] [+] EMBL CD121093 [ GTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCATTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAGCCGCACTGTCTAAATACCGCTCACAACGTGTGATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGAC ] [+] EMBL CD121722 [ GTATATGTTTGGGTGAGTAGTCGAGATCTACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCATTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAGCCGCACTGTCTAAATACCGCTCGCAACGTGTGATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGAC ] [+] EMBL CD194797 [ GGCTTATGTGCACTCTGTTGGCCACTACACAGGATGACCGATTGTGGATTTACTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAATGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCTTATTGATATCTACAAGCGAGATGC ] [-] EMBL CD156321 [ gCTACACAGGATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCCTATTTATATCTACAAGCGAGATGCAAGGTAGTGACGGGTCATGCCCAAGTACATGGTGCATGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGTGCTA ] [+] EMBL CD195037 [ GGGTCAACCGCACTGTCTAAATACCGCTCACAACGTGTGATGTGTGGGCTGTCAAATGATGTCAGGGTAGGCGGTAGGTGATTACTCTTATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCGTGTCCAAGTACATGGTGCACGTCTAGTGTAGCTGTAGGAAGATCAGAGTATGATGCAGACTGATCAGTGTGTTTAGAAAGCTTCGCATTATTCGCGTGAGTTGTGGATTTAGATCTTTTGCACGTGCTATGAGCATCAGGAGAGATTATGTGTTTTTTTAGATGACCTGGACATTGTTAGAAGTAATGTAAATATAAATTTTGTATTGGGTGAGCAGTCGAGATCTACATTATTANGCTGGCTACTGTAGGTGG] consensusID : consensus_10124#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 346 fasta sequence [ACGGCTCACGGAACTTTGTATTTTTATATTATATTTTGTACAGTTGTTAGTGGAATTCATCAATGGGAATGAATTTCGTTTAATAGATGTTTCATTTTTTGGACTTGAATGATTATTATTTGATAACTTGGATGAACAATTAGTTTCATTGCAACTATGTGGTAAATGAGATTCACATGCTAGAAAACACCACTGATGTGATCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGAACTGAAAATGTTTAGTGTAGTGAAAAGTGTTAATTACATCTTCTC] [+] EMBL CD167215 [ACGGCTCACGGAACTTTGTATTTTTATATTATATTTTGTACAGTTGTTAGTGGAATTCATCAATGGGAATGAATTTCGTTTAATAGATGTTTCATTTTTTGGACTTGAATGATTATTATTTGATAACTTGGATGAACAATTAGTTTCATTGCAACTATGTGGTAAATGAGATTCACATGCTAGAAAACACCACTGATGTGATCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGAACTGAAAATGTTTAGTGTAGTGAAAAGTGTTAATTACATCTTCTC] [-] EMBL CD167391 [ atTTATATTTTGTACAGTTGTTAGTGGAATTCAACAATGGGAATGAATTTCGTTTAATAGATGTTTCATTTTTTGGACTTGAATGATTATTATTTGATAACTTGGATGAACAATTAGTTTCATTGCAACTATGTGGTAAATGAGATTCACATGCTAGAAAACACCACTGATGTGATCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCCTACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGAACTGAAAATGTTTAGTGTAGTGAAAAGTGTTAATTACATCTTCc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10124#0 GGGCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTCACA 60 consensus_10124#1 ------------------------------------------------------------ consensus_10124#3 ------------------------------------------------------------ consensus_10124#2 ------------------------------------------------------------ consensus_10124#0 ACGTGTAATGTGTGGGCTGTCAAATGATGTCGGGGTAGGCGGTAGGTGATTACTCTTATT 120 consensus_10124#1 ------------------------------------------------------------ consensus_10124#3 ------------------------------------------------------------ consensus_10124#2 --ATCTTGTGCGTACTTAGTTGGGGGATAA-GGTATATGTTTGGGTGAGTAGTCGAGATC 57 consensus_10124#0 TATAATATATAGGAATCACTCAGAAGAAAATTTACAAAATCTAAAAAACATGTTTCGTAC 180 consensus_10124#1 ------------------------------------------------------------ consensus_10124#3 ------------------------------------------------------------ consensus_10124#2 TACATTATTAGGCTGGCTACTGTAGGTGGGCTTATGTGCACTCTGTTGGCCACTACACAG 117 consensus_10124#0 GACCAACTGGGAATTATTTACAGATGACTCAATAGAAAACACAACGAATGTTATCACCTC 240 consensus_10124#1 -------------------------------ATTTTAG-CTTTAGGAAAATCGGTAACTC 28 consensus_10124#3 -----------------------------------ACGGCTCACGGAACTTTGT--ATTT 23 consensus_10124#2 GATGACCGATTGTGGATTTATTGTGTGTATGGGGTCAACCGCACTGTCTAAATACCGCTC 177 * * * consensus_10124#0 TTATCTTAAATTCTGTT--TTGATATTTGCTGTCCT-ACCGAAACCTTCTTTTTAAGTTT 297 consensus_10124#1 TCAGTCTGAATT--GTG--TTGAAACTA--TGTATT-ATTGA---------CTGAAGTCT 72 consensus_10124#3 TTATATTATATTTTGTA--CAGTTGTTAGTGGAATTCATCAATGGGAATGAATTTCGTTT 81 consensus_10124#2 ACAACGTGTGATGAGTGGGCTGTCAAATGATGTCTGGCTAGGCGGTATGTGATTACTCTT 237 * * * ** * * * * consensus_10124#0 TGATCGACTTACATCTCCACAACTAA--AACGACTACGGAGGGTAAAAGAAAGGATGTAC 355 consensus_10124#1 TAAAAGCACNAAAATTGTGTTGTTTA--AGACATAATTAGTTGTTTACTGGGAGATGTTC 130 consensus_10124#3 AATAGATGTTTCATTTTTTGGACTTG--AATGATTATTATTTGATAACTT--GGATGAAC 137 consensus_10124#2 ATTTATATCTACAAGCGAGATGCAAGGTAGTGACAGGTCATGCCCAAGTACATGGTGCAT 297 * * * * * ** consensus_10124#0 AAGGAGAAAAACACTATTGAAGTTCGTAAGTTAAATGATCAAATAAACCAAGAGATT-AG 414 consensus_10124#1 AAC----ACTTTACTACTGAAGTTCGTAAGTTAAATGGTCAAATAAACCAAGAGATT-AG 185 consensus_10124#3 AAT-----TAGTTTCATTGCAACT-ATGTGGTAAATG-------AGATTCACATGCT-AG 183 consensus_10124#2 GTCTAGTGTAGCTGTAGGAAGATC--AGAGTATGATG--CAGACTGATCAGTGTGTTTAG 353 * * *** * * ** consensus_10124#0 ACGTCTCAAC-T-ATGTGT-TCACTCAAAAACTTCTATCTTGCAGAAGC-TCTCCAAGTA 470 consensus_10124#1 ACGTCTCAAC-T-CTGTGT-TTACTCAAAAACTCCTATCTTGTAAAAGC-TCTCCAAGTA 241 consensus_10124#3 AAAACACCAC-TGATGTGA-TCACTTGTTATCCTAAATTCTGTTTTGATATTTGCTGTCC 241 consensus_10124#2 AAAGCTTCACATTATTCGCGTGAGTGGTGGATTTAGACCTTTTGCACGT-GCTATGAGCA 412 * * ** * * * * * * * * * consensus_10124#0 TGTGAAAACTCTTTAAAGAAATTACAGGGGACAAGCAGAATAGAAGCGATAACCAGCTAA 530 consensus_10124#1 TGTGGAAACTCTTTAAAGAAATTACAGGGAACAGGAAGACTAGAAGCGATAACCAGCCAA 301 consensus_10124#3 TACCGAAACCTTCTTTTTAAGTTTTGGTCGACTTACATCTTCACAACTAAAACGACTTGA 301 consensus_10124#2 TCAGGAGAGATTATGT-GTTTTTTTAGATGACCTGGACATTGTTAGAAGTAATG---TAA 468 * * * * * ** * ** * * * ** * consensus_10124#0 ATGTTTGTGACTTAAATAAGTCCTTTATTCGTCAGTCATCTGACATCATGCTCCCTATAT 590 consensus_10124#1 ATGTTTGTGACTTAAATAAGTCCTTTATACGTCAGTCATCTGACATAATGCTCCCTATA- 360 consensus_10124#3 ACTGAAAATGTTTAGTGTAGTGAA--AAGTGTTAATTACATCTTCTC------------- 346 consensus_10124#2 ATATAAAT--TTTGTATTGGGTGAGCAGTCGAGATCTACAT--TATTANGCTGGCTACTG 524 * ** * * * * * * * consensus_10124#0 CCAAGGGTTTGAAGAATAATTGTGTCCCCAGTTTCACTGAAAATGATGT----------- 639 consensus_10124#1 CCAAGAGTCTGAAGAATAATTGAGTTTCCAGTTTCACTGAAAATGATGTCGGAAAATGCC 420 consensus_10124#3 ------------------------------------------------------------ consensus_10124#2 TAGGTGG----------------------------------------------------- 531 consensus_10124#0 ------------------------------------------------------------ consensus_10124#1 CTCCAGTCTCCTTGATTTCATCCCCAATGTTTAGGACCCTAAATGGTATCCCCAAACCTT 480 consensus_10124#3 ------------------------------------------------------------ consensus_10124#2 ------------------------------------------------------------ consensus_10124#0 ------------------------------------------------------------ consensus_10124#1 CCTTTTTAATAAAATGGCCTGATGTTCTATGTTATCCATTAACGAATATCTTTAACAGAT 540 consensus_10124#3 ------------------------------------------------------------ consensus_10124#2 ------------------------------------------------------------ consensus_10124#0 ----------------------- consensus_10124#1 CTTTCTCAACTAATGTCTTCCCG 563 consensus_10124#3 ----------------------- consensus_10124#2 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||