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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10125#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1295 fasta sequence
[GAGCCTTATTCGGCACCAGTGTACACGCTACATGTTTTCGGGGCGGGTTCTGGGCGCTTTTATGTTTAGTGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCTTCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGA-CGTTGAAAA-CAAACTCAAG--AGTTACTAACCA--TCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGATAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC-GAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA-TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCTGGACCATCACCAAGCACTTCAACGCAACCATCACTGCCTGTAGATCGAAAACCTCGTGTTTAACATGTTTTTAGTTTCTTCAATTGATACTGTTAAAGGCTTGACACAAATATGGTTTGGTATAACACTATTTTTATTTCGATAAGTTTACTTA-GCC-ATCCAAACTTGATGTACACTG-AAGTCTTGTTTTACTTACTAATGTG-AAATTATTGACTTTTCTTGTTTATATATATAGTTT]
[+] EMBL CD081503 [GAGCCTTATTCGGCACCAGTGTACACGCTACATGTTTTCGGGGCGGGTTCTGGGCGCTTTTATGTTTAGTGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCTTCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGA CGTTGAAAA CAAACTCAAG AGTTACTAACCA TCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGATAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC GACAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTTAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGCTTATTG ]
[+] EMBL CD061090 [ CGCTACATGTTTTCGGGGCGGGTTTTGGGCGCTTTTATGTTTAGCGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCTTCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGA CGTTGAAAA CAAACTCAAG AGTTACTAACCA CCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTT ]
[+] EMBL CD082027 [ cGAGACCGTTGAAAACCAAACTCAAGAAAGTTACTAACCANNTCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGATGTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCACTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGATAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC GAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCANATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAA ]
[+] EMBL CD190280 [ gTCCTGCGCAGCTCTTGAGTATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATACAGAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAGACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTATCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCT ]
[-] EMBL CD069314 [ ATTGACTTTCATCTTCATCACGCTCAAGAACCTATACTGTTCATAATAC GAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTACTTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCAT ]
[+] EMBL CD122851 [ ATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACCTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTC ]
[-] EMBL CD122769 [ TCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAACCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCGAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCA ]
[+] EMBL CD170706 [ TTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCT ]
[+] EMBL CD170691 [ TTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATNAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGNCTACATTAACCGGTGTTTCTGTTGTCCCT ]
[-] EMBL CD075327 [ TAAAGAACCAGATCAAACTTATGCANAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCTGGACCATCACCAAGCACTTCAACGCAACCATCACTGCCTGTAGATCGAAAACCTCGTGTTTAACATGTTTTTAGTTTCTTCAATTGATACTGTTAAAGGCTTGACACAAATATGGTTTGGTATAACACTATTTTTATTTCGATAAGTTTACTTA GCC ATCCAAACTTGATGTACACTG AAGTCTTGTTTTACTTACTAATGTG AAATTATTGACTTTTCTTGTTTATATATATAGTTT]
[+] EMBL CD084894 [ GAAAGAGATTTATATAAAAGTGCAAATTTA TTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCCCGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGCGACAGTTACTTCTGCAGTTAACGCAAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGCATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTACAAGGCTGCCTACATTACCCGGTGTT ]
[+] EMBL SM869 [ TTCGATAAGTTTACTTAGGCCAATCCAAACTTGATGTACACTGNAAGTCTTGTTTTACTTACTAATGTGAAAATTATTGACTTTTCTTGTTT ]
consensusID : consensus_10125#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[CGGTCCGAGGGAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCANNATCTCAATCTACCTCANATACNTGAAGAGANT]
[+] EMBL CD077738 [CGGTCCGAGGGAAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAACGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGCAATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTCAGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGATCAAACTTATGCANNATCTCAATCTACCTCANATACNTGAAGAGANT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10125#0 GAGCCTTATTCGGCACCAGTGTACACGCTACATGTTTTCGGGGCGGGTTCTGGGCGCTTT 60
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 TATGTTTAGTGTTGGGTTTTTGTGTGGATATTATTTTCATATTCTTCATCTAAAGTACCT 120
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 TCGTAAAAAGCAAAACTTCTTCCAGAACCGTCTCAGAGACGTTGAAAACAAACTCAAGAG 180
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 TTACTAACCATCTAGCCTTACAACAACCTTAAGAAGGTCGACTGTTACTCGTCTGCTGAT 240
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 GTCCTCTCAAGTTAAAGAAGATTTATATGGTGTATCATGGTCTAATCCAGCATGGAGTCA 300
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 CTTCCTTTGCTCGGCAAACGTTCTCGACTATTTCTGCGACCTTTCCAATCCTTTTTATGA 360
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 TAGGCAGTGCAATAATGAGGTTATTCGAATGCAAAGACTCCATCCTGAGCAGCTCTTGTG 420
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 TATGACAGGTATTGAGTTTTATCTTCATCACGCTCAAGAACCTATACTGTTCATAATACG 480
consensus_10125#1 ----------------------------------------------CGGTCCGAGG---G 11
* ** * *
consensus_10125#0 AAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAA 540
consensus_10125#1 AAAGCAGCAACGTTTATCTCCCACTCAAGTCACTCCATTGGCTTATTACTATGTGATTAA 71
************************************************************
consensus_10125#0 CGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGC 600
consensus_10125#1 CGGGACAGTACTTCAAGCGCCAGATCTTTCTACTCTACTGAACTCTCGTTTATTGACAGC 131
************************************************************
consensus_10125#0 AATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTC 660
consensus_10125#1 AATTGTAGGGTTGAAGAAAGTAATCCAGACATTAGGTCCTTGTGCTCGATATCATCCTTC 191
************************************************************
consensus_10125#0 AGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGA 720
consensus_10125#1 AGACGGTTCCTATTCATGGGATGACCCTAATGTTTTGCTTGGATATAATAAAGAACCAGA 251
************************************************************
consensus_10125#0 TCAAACTTATGCAAAATCTCAATCTACCTCAAATACTGAAAGAGATTTATATAAAAGTGC 780
consensus_10125#1 TCAAACTTATGCANNATCTCAATCTACCTCANATACNTGAAGAGANT------------- 298
************* **************** **** ****** *
consensus_10125#0 AAATTTATTTCAAGTTCAAAGAACAGATACCCTACTTGCTGACTGGATGAATCGCTTTCC 840
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 CGTCCCATCAGCAAGTTTTATTCAAAATCTGGCCAACTCAGGACAAACGTCATCTGTAGC 900
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 GACAGTTACTTCTGCAGTTAACGCGAGTGGAGTCGTTTCTCTTACATCAGCTCAAACCGC 960
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 ATCTTCTATAAAGGAAGAAAACCTTCAGATCAACTGCAATTCTCCAGCTAAATTACCTAC 1020
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 AAGGCTGCCTACATTACCCGGTGTTTCTGTTGTCCCTGGACCATCACCAAGCACTTCAAC 1080
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 GCAACCATCACTGCCTGTAGATCGAAAACCTCGTGTTTAACATGTTTTTAGTTTCTTCAA 1140
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 TTGATACTGTTAAAGGCTTGACACAAATATGGTTTGGTATAACACTATTTTTATTTCGAT 1200
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 AAGTTTACTTAGCCATCCAAACTTGATGTACACTGAAGTCTTGTTTTACTTACTAATGTG 1260
consensus_10125#1 ------------------------------------------------------------
consensus_10125#0 AAATTATTGACTTTTCTTGTTTATATATATAGTTT 1295
consensus_10125#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||