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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 796 fasta sequence
[TGGATATGGCCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAAAAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT-AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA]
[+] EMBL CD078654 [TGGATATGGCCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAAAAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCANACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTC ]
[+] EMBL AI976041 [ CCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAAAAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGCTCACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATT ]
[+] EMBL CD195643 [ ATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTTTAAGCTCAGTGGATCAACCTTTAAAGATCGCGGGAGATGTCCATGCTGATCGTGATTATTTATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACGACCCGCCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGNGATATGGATCATGGA ]
[+] EMBL CD121945 [ CCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAATTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTTACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACA ]
[-] EMBL CD122030 [ ATGGATCATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGTTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTACAAACCCAACGAAAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA]
[-] EMBL CD121822 [ CATGGATTCGCTGGGGTTATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAGAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA]
[-] EMBL CD121871 [ GTTATTCTGATAAAAGAAAGCTGTTAATGCTAAGTTGCCTAGTGTTTNTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATACAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATACAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA]
[-] EMBL CD122042 [ TATTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGTTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA]
[-] EMBL CD122029 [ TTCTGAT AAAGAAAGCTGGTAATGCTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTTCTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAACGAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAACTTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTATGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAACAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTCGGCGTTTAGTTCAAGA]
consensusID : consensus_10127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[CACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCAACGTTGGACCCAATTAGATCACATCGCTATCAGCCACCGATGGGAGGGGCTCGATAGAAGACTGTCGCTCATTCCAGCATCTGCAGTTATGCTGTCTTCTCTCAAGGAAGGAAGGGGTTAGAAAAGGTCAACCCTAAAAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAATTCCAAATATCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCACAACTAATCCTTCTCATGTCCC]
[+] EMBL CD164550 [CACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCAACGTTGGACCCAATTAGATCACATCGCTATCAGCCACCGATGGGAGGGGCTCGATAGAAGACTGTCGCTCATTCCAGCATCTGCAGTTATGCTGTCTTCTCTCAAGGAAGGAAGGGGTTAGAAAAGGTCAACCCTAAAAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAATTCCAAATAT ]
[+] EMBL CD149766 [ AAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAA TCCAAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCACAACTAATCCTTCTCATGTCCC]
consensusID : consensus_10127#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence
[CACCACTTGAGGTTGTAAAATCATATGACAGTTCGCCATACATGTAGTTTACAACGTGGTTTCAGGAGACCGGGAGTAACGTTCCGCGTACTCGGATTGTTTGCATTAGCGGTGCGGTGATTAAAGAACGTGAGAAGGGTTAGTCGTGAAGATAAGAGAGTTATTAGATGGAGGAAGGATTTGAATGTGACCAACTTGGTCTCGTATGTTGTTACGGG]
[+] EMBL CD192429 [CACCACTTGAGGTTGTAAAATCATATGACAGTTCGCCATACATGTAGTTTACAACGTGGTTTCAGGAGACCGGGAGTAACGTTCCGCGTACTCGGATTGTTTGCATTAGCGGTGCGGTGATTAAAGAACGTGAGAAGGGTTAGTCGTGAAGATAAGAGAGTTATTAGATGGAGGAAGGATTTGAATGTGACCAACTTGGTCTCGTATGTTGTTACGGG]
consensusID : consensus_10127#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence
[GAAGTGATATTAGCCCTCATACCCGTAACAGCACACGAGACCATGTTGGTCACTTTCAAATCCTTCCTACTCCTAATAACTGTCTTATCTCCACGACTAACCCTTCCCACGTCCTTTTATCACCCCGCACCGCTA]
[+] EMBL CD157569 [GAAGTGATATTAGCCCTCATACCCGTAACAGCACACGAGACCATGTTGGTCACTTTCAAATCCTTCCTACTCCTAATAACTGTCTTATCTCCACGACTAACCCTTCCCACGTCCTTTTATCACCCCGCACCGCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10127#1 ----CACATTCAAATCCTTCCTACACCTAATAACTCTCTTATCTCCAACGTTGGACCCAA 56
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 TGGATATGGCCAATCCTCTTACTTCTGTCATGGATTTGATGCGACGTCTACCGCCTCAAA 60
consensus_10127#1 TTAGATCACATCGCTATCAGCCACCGATGGGAGGGGCTCGATAGAAGACTGTCGCTCATT 116
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 AAATCAATCATACTTTGGTGGATGTAATCTCGCTTAAACCAGAACACTGTGAAGATATTT 120
consensus_10127#1 CCAGCATCTGCAGTTATGCTGTCTTCTCTCAAGGAAGGAAGGGGTTAGAAAAGGTCAACC 176
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 TAAGCTCAGTGGATCAACCTTTAAAGATCGCGAGAGATGTCCATGCTGATCGTGATTATT 180
consensus_10127#1 CTAAAAGCGTCACACCTTACCTCACGGATTTCCGTCTCTTCCGGTAAGGCCCTTTAAAGA 236
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 TATTATGCGATTATAACAGAGATGGTGATTCTTATCGATCACCTTGGTCAAATACCTACG 240
consensus_10127#1 ACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAG 296
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 ACCCACCACTAGAAGATGGAGCTATGCCAAGTGAAAGTCTTCGTAAACGAGAAATAGAAA 300
consensus_10127#1 TTGTCCCTCGGGCTCCGCGGTCACGCTCTCAGGTCGTTAAGACCAATATTAATTCCAAAT 356
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 --------------CACCACTTGAGGTTGTAAAATCATATGACAGTTCGCCATACATGTA 46
consensus_10127#0 TTAATACAGCTTTTGATCAATACAGAGAAATGTATTATGAGGGAGGGATATCTTCAGTTT 360
consensus_10127#1 ATCTTCTCAGG-TCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTG-ATA 414
consensus_10127#3 --------------------------------------------------GAAGTG-ATA 9
consensus_10127#2 GTTTACAACGT-GGTTTCAGGAGACCGGGAGTAACGTTCCGCGTACTCGGATTGTTTGCA 105
consensus_10127#0 ACCTATGGGATATGGATCATGGATTCGCTGGGGTTATTCTGATAAAGAAAGCTGGTAATG 420
*
consensus_10127#1 TCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACAT---TCAAATCCTTC 471
consensus_10127#3 TTAGCCCTCATACCCGTAACAGCACACGAGACCATGTTGGTCACTT---TCAAATCCTTC 66
consensus_10127#2 TTAGCGGT-GCGGTGATTAAAGAACGTGAGAA-GGGTTAGTCGTGAAGATAAGAGAGTTA 163
consensus_10127#0 CTAAGTTGGCTAGTGGTTGTTGGGATTCAATACATGTTATTGATGTTGTTGAAAGGCCTT 480
* * * *** * * * * *
consensus_10127#1 CTACACCTAATAACTCTCTTATCTCCACAACTAATCCT-TCTCATGTCCC---------- 520
consensus_10127#3 CTACTCCTAATAACTGTCTTATCTCCACGACTAACCCT-TCCCACGTCCTTTTATCACCC 125
consensus_10127#2 TTAGATGGAGGAAGGATTTGAAT---GTGACCAACTTGGTCTCGTATGTTGTTACGGG-- 218
consensus_10127#0 CTGCTAAAATATCCTTATATAAGCTTACAAGTACAGTTATGCTATGGCTTCAAACCCAAC 540
* * * * * *
consensus_10127#1 ------------------------------------------------------------
consensus_10127#3 CGCACCGCTA-------------------------------------------------- 135
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 GAGAATCTGCAGGTTATTTCAATCTTGGTGGTAGTCTTTCAAGATTCAGTGAGCGTGAAC 600
consensus_10127#1 ------------------------------------------------------------
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 TTCCTTTGGGAGACTCAGGTGTTCCAATAACTACTTCACATATTGTTAATATTGGCCGTA 660
consensus_10127#1 ------------------------------------------------------------
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 TGGTAGAAGATGTTGAAAACTCAATCCGCTCAACGCTCAATGAAGTATATTTCGGTACAA 720
consensus_10127#1 ------------------------------------------------------------
consensus_10127#3 ------------------------------------------------------------
consensus_10127#2 ------------------------------------------------------------
consensus_10127#0 CAAAAAATATTGTTGATTCATTACGTTCTATCGTACCTGCCTCAGAAGAGGAAAAACGTC 780
consensus_10127#1 ----------------
consensus_10127#3 ----------------
consensus_10127#2 ----------------
consensus_10127#0 GGCGTTTAGTTCAAGA 796
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||