cluster # 10131

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Schistosoma mansoni
cluster # 10131 cluster # 10131 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10131#0 length = 575 sequences # 1
consensus_10131#1 length = 490 sequences # 10

consensus_10131#2 length = 293 sequences # 1
consensus_10131#3 length = 284 sequences # 1

consensusID : consensus_10131#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATAAAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGTCCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATTTTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACTTCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATTTCGCAGACTATCAGAACACACTTAGAGTATTGCTTGCCTC]

[+] EMBL CD127633             [TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATAAAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGTCCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATTTTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACTTCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATTTCGCAGACTATCAGAACACACTTAGAGTATTGCTTGCCTC]




>consensus_10131#0
TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATA
AAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGT
CCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATT
TTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCC
CCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACT
TCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG
GGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTT
ATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTC
CAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATTTCGCA
GACTATCAGAACACACTTAGAGTATTGCTTGCCTC

consensusID : consensus_10131#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 490
fasta sequence

                              [ATAGTTGTTGTAGCGTTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT-CAAGATGTTGAGGGACAAC-GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT-TTATAG-GACTATCA-GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGTGGGCCTCGAGGTATTTATATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAAAGAATTGGCCTGCTGATACAATTAAGACA]

[+] EMBL CD125781             [ATAGTTGTTGTAGCGTTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC                                                                                                      ]
[+] EMBL CD128077             [                                     AGTTACCGCTATATCCCATCATTAATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTC                                                                                                                                               ]
[-] EMBL CD062796             [                                                                                                                                GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGTGGGC                                                                                   ]
[+] EMBL CD062734             [                                                                                                                                GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATAGACTGTTGCCACCGAATCCTCAAAATGCAAGATGCTGAGGGACAACTGAGTTATTTCAAACCTTTATCAACTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTCTTATAGCGACTATCATTAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTACGCTTAGCATGCTTGAATTTC                                                                                                      ]
[+] EMBL CD062783             [                                                                                                                                GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC                                                                                                      ]
[-] EMBL CD062822             [                                                                                                                                 TTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTC TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACAGACCTACTGTAGGCTTAGCATGC TGAATTTCGGTTTTGTnctnc                                                                                         ]
[-] EMBL CD062829             [                                                                                                                                 TTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCA GCTTGAATTTCGGTTTTGTnct                                                                                           ]
[-] EMBL CD062786             [                                                                                                                                 TTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATT                                                                                                                                          ]
[-] EMBL CD132047             [                                                                                                                                                                             GACTGTTGCCACCGAATCCTCAAAAT CAAGATGTTGAGGGACAAC GAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGG                                                                                                    ]
[+] EMBL CD179287             [                                                                                                                                                                                                                                                                                   AATGTCTCTCCAAGATCTTAACGAGAAGCTGTT TTATAG GACTATCA GAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGAAGGCCTCGAGGTATTTATATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAAAGAATTGGCCTGCTGATACAATTAAGACA]




>consensus_10131#1
ATAGTTGTTGTAGCGTTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATT
AATTCGAAATGCGCCCCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGAC
AAATAAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTT
GCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCA
GCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAA
GCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACC
TACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCCGTGGGCCTCGAGGTATTTA
TATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAAAGAATTGGCCTGCTGATAC
AATTAAGACA

consensusID : consensus_10131#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TACCCAATAAGAACGCCCACGGNACAAATAAGGGTTCCTTTTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC]

[+] EMBL CD062800             [TACCCAATAAGAACGCCCACGGNACAAATAAGGGTTCCTTTTATACTCTCCATGAGCGCCAACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGACAACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC]




>consensus_10131#2
TACCCAATAAGAACGCCCACGGNACAAATAAGGGTTCCTTTTATACTCTCCATGAGCGCC
AACTTCTGGGGATCCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTTGAGGGAC
AACGAGTTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAA
TGTCTCTCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGT
ATTGCTTGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC

consensusID : consensus_10131#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [CCATATTAATTCTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAGTTATTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCTTGCCTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC]

[+] EMBL CD062729             [CCATATTAATTCTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGGATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAGTTATTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCCAAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCTTGCCTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC]




>consensus_10131#3
CCATATTAATTCTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTGGGG
ATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAGTTA
TTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTCTCC
AAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCTTGC
CTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10131#1      ------------------------------------------------------------
consensus_10131#2      ------------------------------------------------------------
consensus_10131#3      ------------------------------------------------------------
consensus_10131#0      TAGGTTGTGTGATCAATAATAACTGAGAACAATTGTTCTCCTTTCCAGCACATTTTAATA 60
                                                                                   

consensus_10131#1      ------------------------------------------------------------
consensus_10131#2      ------------------------------------------------------------
consensus_10131#3      ------------------------------------------------------------
consensus_10131#0      AAAAATCACAAGCTTGTGATGACAACTTGTTAAAAATACAAATCACTCCTTCACTGATGT 120
                                                                                   

consensus_10131#1      ---------------------------------------------ATAGTTGTTGTAGCG 15
consensus_10131#2      ------------------------------------------------------------
consensus_10131#3      ------------------------------------------------------------
consensus_10131#0      CCTACTTCTAAGTTTTGAGTTATTATGTGTTTCAGGAAATTTGAAGTTATCTTTGCCATT 180
                                                                                   

consensus_10131#1      TTGAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCC 75
consensus_10131#2      ------------------------------------------------------------
consensus_10131#3      ------------------------------------------------------------
consensus_10131#0      TTCAGGAAATTTTCTGGATATGAGTTACCGCTATATCCCATCATTAATTCGAAATGCGCC 240
                                                                                   

consensus_10131#1      CCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGG------- 128
consensus_10131#2      --------------------TACCCAATAAGAACGCCCACGGNACAAATAAGG------- 33
consensus_10131#3      -------------------------------CCATATTAATTCTCTCCTCAGG------- 22
consensus_10131#0      CCGCTTAAAAACCCGAGGGATTGAAATTTTGCGCGACCCACGGACAAATAAGGTTAGACT 300
                                                                   *   * ***       

consensus_10131#1      -------------------------GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG 163
consensus_10131#2      -------------------------GTTCCTTTTATACTCTCCATGAGCGCCAACTTCTG 68
consensus_10131#3      -------------------------GTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG 57
consensus_10131#0      TCACCATATTAATTTTCTCCTCAGGGTTCCTCGTATACTCTCCATGAGCGCCAACTTCTG 360
                                                ******  ***************************

consensus_10131#1      GGGAT-CCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTT-GAGGGACAACGAG 221
consensus_10131#2      GGGAT-CCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTT-GAGGGACAACGAG 126
consensus_10131#3      GGGATATCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGATAGAGGGACAACGAG 117
consensus_10131#0      GGGAT-CCATGGACTGTTGCCACCGAATCCTCAAAATCAAGATGTT-GAGGGACAACGAG 418
                       *****  ************************************* * *************

consensus_10131#1      TTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 281
consensus_10131#2      TTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 186
consensus_10131#3      TTATTTCAAACCTTTATCAGCCTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 177
consensus_10131#0      TTATTTCAAACCTTTATCAGCTTGATGATAATCTTAGCCGTTACATGATGTTAATGTCTC 478
                       ********************* **************************************

consensus_10131#1      TCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCT 341
consensus_10131#2      TCCAAGATCTTAACGAAAAGCTGTTTTATAGGACTATCAGAACACACTTAGAGTATTGCT 246
consensus_10131#3      TCCAAAATCTTAACGAAAAGCTGTTTTATAGGACTATCACAACACACTTAGAGTCTTGCT 237
consensus_10131#0      TCCAAGATCTTAACGAAAAGCTGTTTTATAGGGTAATAGTAATCTAATAAGATTATT--T 536
                       ***** **************************   **   **   * * *** * **  *

consensus_10131#1      TGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTCGGTTTTGTCTTCC 401
consensus_10131#2      TGCCTCTTATTTACACACCTACTGTAGGCTTAGCATGCTTGAATTTC------------- 293
consensus_10131#3      TGCCTCTTATTTACACACCTACTGTAAGCTTAACATGCTTGAATTTC------------- 284
consensus_10131#0      CGCAGACTATCAGAACAC--ACTTAGAGTATTGCTTGCCTC------------------- 575
                        **    ***    ****  ***    *  *  * *** *                    

consensus_10131#1      GTGGGCCTCGAGGTATTTATATTACAATTCAGGATAAAGGGCATATTTTTACTTTACTAA 461
consensus_10131#2      ------------------------------------------------------------
consensus_10131#3      ------------------------------------------------------------
consensus_10131#0      ------------------------------------------------------------
                                                                                   

consensus_10131#1      AGAATTGGCCTGCTGATACAATTAAGACA 490
consensus_10131#2      -----------------------------
consensus_10131#3      -----------------------------
consensus_10131#0      -----------------------------