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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 821 fasta sequence
[TCAATTAAAATCCACTGAAGTCTTTCCACCAAATGGAAACTGAATATGATTCTTCCGAAAGGTGGTAAGGATAATCTAGGTAGAAATGCGTTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA-TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACAACCTATGAGAAATTAACTATGTACAAAAATTGCTGGCGGAATGAAAAGTCGAAACCACTGAATAACA-AACTCACATGTACTACGAGGATATTGGAATAATGATGTGAAGAGATTATTTGA-TGCTGAAAATGAAAGGGAGAAAATAAACGATGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATTTGCATTCAGCGAAATTGC]
[-] EMBL CD149370 [TCAATTAAAATCCACTGAAGTCTTTCCACCAAATGGAAACTGAATATGATTCTTCCGAAAGGTGGTAAGGATAATCTAGGTAGAAATGCGTTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATG ]
[+] EMBL CD117177 [ TTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACA ]
[+] EMBL CD117196 [ TTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACA ]
[+] EMBL CD117178 [ TTGGAAATCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTGATTGGTATAGGTGAGTAGTCTTCTTCGTTCAGTAATTTTACCATTGCATGAATAATTGACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTCGATATACTCATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTCATACTCAATAGGTTCCGATAAAGTCAAGGTACCATTTTATACGTCACACTGTGGGTAAAATATGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACA ]
[+] EMBL CD112072 [ TGCCGAA TCCAGTGTATGCGTAACTACTGGATGCTTTGGTAATGTGAAGTCATTATTTGATGTGTAGAAATACGTTTACACAACCTATGAGAAATTAACTATGTACAAAAATTGCTGGCGGAATGAAAAGTCGAAACCACTGAATAACA AACTCACATGTACTACGAGGATATTGGAATAATGATGTGAAGAGATTATTTGA TGCTGAAAATGAAAGGGAGAAAATAAACGATGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGACAATGTGATATTAATTTGCATTCAGCGAAATTGC]
[+] EMBL CD112555 [ TGCCGAACTCCAGTGTATGC TTATTACTGGATGCTCTGGTAATGTGAAGTCATTATTTGATGTGTAGAATTACGTTTACACAACCTATGAGAGATTAATTATGTACAAAAATTGCTGGCGTAATGAAAAGTCGAGACTACTGAATACCATGACGCACATGTACTACGAGGATATTGGAATAATGATGTGAAGAGATTATTCGAGTGCTGGAAATGAACGGGAGAACATAAACGATGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTTATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATT ]
[+] EMBL CD112296 [ AAGAATCTGACTAGAATCTCATGTAACTTGCTATTTTCAATTTCAGAGAACGTCAAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGTTGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATTTGCATTCAGCGAA ]
consensusID : consensus_10134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 807 fasta sequence
[ACGTTAAGCACTATTTCGTGAATACCACTTTCCTTTCTGTACTTATGAATAAACTCTTTGTCTTCAATTTCTCTATTTCTCAACGGCATGGAAATGAAATTGTCACGATTGTGAGTTTACTCATAATATTTACAATGATACGAAAATATTTTGTTGAGTTGACACCTTCTTGTTAGTTCGTGGAGTGTGAAATAACTAGTTCATTCTGTTTACATACTAGGTGACACTCTACCGGAAATGTGTTCTGTGGATCAATTTGTTGTGTTTGTGATGTAGGTTCGTCCTGAAGACAGATGTCATTTGATGATGAGGAGAGACTGTGTCAAAATTTCTCTAGTTGAACGTTCAGAGTACTAGTAAACATTCGGAAAGATTTGAGAATGAATAACGTCGCTTTCCATGTATTGTGCTTCGGCGCCAACGAATTTCCGAAATTTTACACACGTGGTCACGATATTGTTTTCATTGTTTTGTAGTAAGCAAAAGCAAAATATAAAAAACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGTACCAAACCAGCTGTGATTGTCACGTCGAAGAATAAGAACTCAGCTAATAATATGACAGTATCTGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCAAATAATCTCTTCACATCATTATTCCAATATCCTCGTAGTACATCGCATTAACGAATGAAATGCTGAGATCGGATGAACACTGGAGTGTACAGTCTGAATGACTCTTAAC]
[+] EMBL CD153849 [ACGTTAAGCACTATTTCGTGAATACCACTTTCCTTTCTGTACTTATGAATAAACTCTTTGTCTTCAATTTCTCTATTTCTCAACGGCATGGAAATGAAATTGTCACGATTGTGAGTTTACTCATAATATTTACAATGATACGAAAATATTTTGTTGAGTTGACACCTTCTTGTTAGTTCGTGGAGTGTGAAATAACTAGTTCATTCTGTTTACATACTAGGTGACACTCTACCGGAAATGTGTTCTGTGGATCAATTTGTTGTGTTTGTGATGTAGGTTCGTCCTGAAGACAGATGTCATTTGATGATGAGGAGAGACTGTGTCAAAATTTCTCTAGTTGAACGTTCAGAGTACTAGTAAACATTCGGAAAGATTTGAGAATGAATAACGTCGCTTTCCATGTATTGTGCTTCGGCGCCAACGAATTTCCGAAATTTTACACACGTGGTCACGATATTGTTTTCATTGTTTTGTAGTAAGCAAAAGCAAAATATAAAAAACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGTACCAAACCAGCTGT ]
[+] EMBL CD158422 [ TATAAAAAACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGTACAAAACCAGCTGTGATTGTCACGTCGAAGAATAAGAACTCAGCTAATAATATGACAGTATCTGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATC ]
[-] EMBL CD163468 [ gattcgaTATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAACATCAAATAATCTCTTCACATCATTATTCCAATATCCTCGTAGTACATCGCATTAACGAATGAAATGCTGAGATCGGATGAACACTGGAGTGTACAGTCTGAATGACTCTTAAC]
consensusID : consensus_10134#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 273 fasta sequence
[ATAACATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCTCTGAGAAAATTGCAGTCGATTCATTATCCGAAGTAC]
[+] EMBL CD118942 [ TAACATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAA ]
[+] EMBL CD163346 [agAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCTCTGAGAAAATTGCAGTCGATTCATTATCCGAAGTAC]
[-] EMBL CD124580 [ ATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGATAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCGAAGTTCCGCGTCAGGCCACTGAGAAAATTGCAGTCGATTCAATATCCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10134#1 ACGTTAAGCACTATTTCGTGAATACCACTTTCCTTTCTGTACTTATGAATAAACTCTTTG 60
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 --------------------TCAATTAAAATCCACTGAAGTCTTTCCACCAAA---TGGA 37
consensus_10134#1 TCTTCAATTTCTCTATTTCTCAACGGCATGGAAATGAAATTGTCACGATTGTGAGTTTAC 120
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 AACTGAATATGATTCTTCCGAAAGGTGGTAAGGATAATCTAGGTAGAAATGCGTTGGAAA 97
consensus_10134#1 TCATAATATTTACAATGATACGAAAATATTTTGTTGAGTTGACACCTTCTTGTTAGTTCG 180
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 TCTACGGGTGTAAACTGAGAGTAGTTTTTGTTAGCACAATTTTAGATTGTAATCTGAGTG 157
consensus_10134#1 TGGAGTGTGAAATAACTAGTTCATTCTGTTTACATACTAGGTGACACTCTACCGGAAATG 240
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 ATTGGTAT-AGGTGAGTAGTCTTCTTCGTTCAGTAATT--TTACCATTGCATGAATAATT 214
consensus_10134#1 TGTTCTGTGGATCAATTTGTTGTGTTTGTGATGTAGGTTCGTCCTGAAGACAGATGTCAT 300
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 GACATAATATCTATGTTCGTTATCGCAATAGAACATGACTTGCCTTGACTC-GATATACT 273
consensus_10134#1 TTGATGATGAGGAGAGACTGTGTCAAAATTTCTCTAGTTGAACGTTCAGAGTACTAGTAA 360
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 CATGAAAGTTCTATAATCTGAAATTATCTGATTGACATCATTACATCGTATCAACAATTC 333
consensus_10134#1 ACATTCGGAAAGATTTGAGAATGAATAACGTCGCTTTCCATGTATTGTGCTTCGGCGCCA 420
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 ATACTCAATAGGTTCCGATAAAGT-CAAGGTACCATTTTATACGTCACACTGTGGG--TA 390
consensus_10134#1 ACGAATTTCCGAAATTTTACACACGTGGTCACGATATTGTTTTCATTGTTTTGTAGTAAG 480
consensus_10134#2 --------------------------------------------ATAACATTGCAGTCGA 16
consensus_10134#0 AAATATGCCGAATCCAGTGTATGCGTAACTACTGGAT-GCTTTGGTAATGT-GAAGTCAT 448
* * * ***
consensus_10134#1 CAAAAGCAAAATATAAAA-AACAAGTGGGGAAAGTGAACAATGAACGACCAACAATCCGT 539
consensus_10134#2 TT----CAATATCCGAAGTACCGCGTCAGGCCACTGAGAAAATTGCAGTCGAT--TCAAT 70
consensus_10134#0 TATTTGATGTGTAGAAATACGTTTACACAACCTATGAGAAATTAACTATGTACA-AAAAT 507
* ** *** ** * * *
consensus_10134#1 ACCAAACCAGCTGTGATTGTCACGTCGAAGAATAAGAACTCAGCTAATAATATGACAGTA 599
consensus_10134#2 ATCCGAAGTACCGCG----TCAGGCCACTGAG-AAAATTGCAGTCGATT------CAATA 119
consensus_10134#0 TGCTGGCGGAATGAAAAGTCGAAACCACTGAATAACAAACTCACATGTACTACGAGGATA 567
* * * * ** ** * * **
consensus_10134#1 TCTGAAGTACCGCGTCAGGCCACT-------GAGAAAATTGCAGTCGATTCAATATCCGA 652
consensus_10134#2 TCCGAAGTACCGCGTCAGGCCACT-------GAGAAAATTGCAGTCGATTCAATATCCGA 172
consensus_10134#0 TTGGAATAATGATGTGAAGAGATTATTTGATGCTGAAAATGAAAGGGAGAAAATAAACGA 627
* *** * ** * * * * * *** ** * ** **** ***
consensus_10134#1 AGTACCGCGTCAGGCCA-----CTGAGAAAATTGCAGTCGATTCAATATCAAATAATCTC 707
consensus_10134#2 AGTACCGCGTCAGGCCA-----CTGAGAAAATTGCAGTCGATTCAATATCCGAAGTAC-- 225
consensus_10134#0 TGTAAAGAATCTGACTAGAATCTCATGTAAATTGCTATT--TTCAATTTCAGAGAACGTC 685
*** * ** * * * * ******* * ****** ** *
consensus_10134#1 ---TTCAC-ATCATTATTCCAATATCCTCGTAGTACATCGCATTAA--CGAATGAAATGC 761
consensus_10134#2 -----CGC-GTCAGGCCTCTGAGAAAATTGCAGTCGATT-CATTAT--C---CGAAGTAC 273
consensus_10134#0 AAATTTACTATTTTTGTTTTATGGAGAGGAAAACAATTTGAATTAAGCCATTCTGATTGT 745
* * * * * **** * * *
consensus_10134#1 TGAGATCGGATGAACACTGGAGTGTACAGTCTGAATGACTCTTAAC-------------- 807
consensus_10134#2 ------------------------------------------------------------
consensus_10134#0 TGAAGTAAAAGTAATTGAAGATGACGATGTTCAGAAGACTGAAAATGTGATATTAATTTG 805
consensus_10134#1 ----------------
consensus_10134#2 ----------------
consensus_10134#0 CATTCAGCGAAATTGC 821
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||