cluster # 10140

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Schistosoma mansoni
cluster # 10140 cluster # 10140 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10140#0 length = 928 sequences # 11

consensus_10140#1 length = 368 sequences # 1
consensus_10140#2 length = 259 sequences # 1

consensusID : consensus_10140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 928
fasta sequence

                              [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCCTTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTCTGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATACACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCTCCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCTTGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTTAATTTGCTTATCGAGGCCAACCTCGTGC]

[-] EMBL CD185195             [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAA TTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD074287             [                                                                 tgCACCATAATATTACCAGAAAGGCCAGTAAAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTTTTCAACAGGTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGCAAGTATATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCCTTCAATTTCTGATGATAAGTTCAA                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD074467             [                                                                  tgACCATAATATTACCAGAAAGGCCAGTAAAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGGTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGCAAGTAGATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGGCACTTCGAAACACCATC                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD137453             [                                                                  tactgATAATAGTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTAGCCAAGTCATCTTCCGTAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD130629             [                                                                                                                                                                                                                               GACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD184351             [                                                                                                                                                                                                                                                       GTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTCTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD184354             [                                                                                                                                                                                                                                                       GTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTCTTTACAATAGTTCCAGGAGCC TTTTTTCTGAATCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD185225             [                                                                                                                                                                                                                                                        TATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAACAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD185341             [                                                                                                                                                                                                                                                        TATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD185234             [                                                                                                                                                                                                                                                        cATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD080371             [                                                                                                                                                                                                                                                                                                                                                                                                                                 AGATGTCGGTGGTTCACCGAAAAACGTAGCGGTGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGTCAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTATATTGGCTTATTTATTCCTTCAATTTTTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTCTGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATACACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCTCCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCTTGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTTAATTTGCTTATCGAGGCCAACCTCGTGC]




>consensus_10140#0
CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC
GGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAA
GTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAA
TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC
TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC
CAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT
AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA
TGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGT
CACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTT
TATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCC
TTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTC
TGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATA
CACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCT
CCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCT
TGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTT
AATTTGCTTATCGAGGCCAACCTCGTGC

consensusID : consensus_10140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG]

[-] EMBL CD131429             [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG]




>consensus_10140#1
CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC
GGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAAT
TAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTT
TGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTT
AGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTAC
AATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGT
AGATGTCG

consensusID : consensus_10140#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATTACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATTACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC]

[+] EMBL AI394989             [TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATTACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATTACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC]




>consensus_10140#2
TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATT
ACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATT
ACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCT
CGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTT
TATGACAATAATGGTTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10140#0      CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC 60
consensus_10140#1      CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC 60
consensus_10140#2      --------TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAG 52
                                ***** * *   *  *  * *  ** *  *   * **   *   **     

consensus_10140#0      GGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAA 120
consensus_10140#1      GGTGGTTCACC------------GAAAAAC------------------GTAGCGGCGAAC 90
consensus_10140#2      TACAAATTACAGGTAATAACACTAAAAGTTGAT---------------TTAACAGCTCAA 97
                             * **              ***                      ** *     * 

consensus_10140#0      GTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAA 180
consensus_10140#1      TTTCGCTTTA---------TCCATGGGAGAT------------------CTGTCAATTAA 123
consensus_10140#2      TCACACGAGA---------TCTATAAGTTAT---------TACGAGATCTTGTCAATTAA 139
                                *            *      **                   **********

consensus_10140#0      TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC 240
consensus_10140#1      TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC 183
consensus_10140#2      GTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGC 199
                        ******* ***     *************************** **** ***** ****

consensus_10140#0      TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC 300
consensus_10140#1      TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC 243
consensus_10140#2      TTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC 259
                       ******************* *************** ****************** *****

consensus_10140#0      CAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT 360
consensus_10140#1      CAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT 303
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA 420
consensus_10140#1      AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA 363
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      TGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGT 480
consensus_10140#1      TGTCG------------------------------------------------------- 368
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      CACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTT 540
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      TATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCC 600
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      TTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTC 660
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      TGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATA 720
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      CACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCT 780
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      CCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCT 840
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      TGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTT 900
consensus_10140#1      ------------------------------------------------------------
consensus_10140#2      ------------------------------------------------------------
                                                                                   

consensus_10140#0      AATTTGCTTATCGAGGCCAACCTCGTGC 928
consensus_10140#1      ----------------------------
consensus_10140#2      ----------------------------