These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 553 fasta sequence [AGTGGAGGGTATTCGTCTTATACGCTACAAGAGCGGGCTCTGTTTGCAAGGTTTCCTGTACGAAAATGGTCACTTTTTAGCTATGAAAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTCCGAGCCCACCACCTACTCCTGTAACGCTTAGTGCTGTTGTGGAAGCCCCAACAAATCCTGTTTCTGAGTCTCGACAGCTTGACTCTATTCCTAACCTTCCAGCCGTACTTCGCAATCGTTTTAGACGACGTCGCAATGCTATTTGTGAC] [+] EMBL CD183239 [AGTGGAGGGTATTCGTCTTATACGCTACAAGAGCGGGCTCTGTTTGCAAGGTTTCCTGTACGAAAATGGTCACTTTTTAGCTATGAAAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTCCGAGCCCACCACCTACTCCTGTAACGCTTAGTGCTGTTGTGGAAGCCCCAACAAATCCTGTTTCTGAGTCTCGACAGCTTGACTCTATTCCTAACCTTCCAGCCGTACTTCGCAATCGTTTTAGACGACGTCGCAATGCTATTTGTGAC] [-] EMBL CD201785 [ TCGTCTTATACGCTACAAGGGCGGGCTCTGTTTGCAAGGTTTCCTGTACGAAAATGGTCACTTTTTAGCTATGANAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACATACTTCCCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCTGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTCCGAGCCCACCACCTACTCCTGTAACGCTTAGTGCTGTTGTGGAAGCCCCAACAAATCCTGTTTCTGAGTCTCGACAGCTTGACCCTATTCCTAACCTTCCAGCCGTACTTCGCAATCGTTTTAGACGACGACGCAATGCTATTTGTG ] [+] EMBL BG930772 [ gTCTGTTTGCAAGGTTTCCTGTACGAAAGTGGTCACTTTTTAGCTATGAAAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACACACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAG ] [+] EMBL CD200778 [ TTTG AAGGTTTCCTGTACGAAAATGGACACTTTTTACCTATGAAAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAAAAATACGGACCAGGTACTTGCCGAGTAAAACACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAAC ] [-] EMBL CD178779 [ CAAGGTTTCCTGTACGAAAATGGTCACTTTTTAGCTATGAAAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTCCGAGCCCACCACCTACTCCTGTAACGCTTAGTGCTGTTGTGGAAGCCCCAACAAATCCTGTTTCTGAGTCTCGACAGCTTGACTC ] [+] EMBL CD200575 [ CAAGGTTTCCTGTACGAAAATGGTCACTTTTTAGCTATGAAAGTTACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACCGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGCTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAAC ] [-] EMBL CD122255 [ TACCTACAATAATGCATCTAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAACCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTCCGAGCCCACCACCTACTCCTGTAACGCTTAGTGCTGTTGTGGAAGCCCCAACAAATCCTGTTTTTGAGTCTCGACAGCTTGACTC ] [-] EMBL CD178506 [ TAGAGATACAAACGTTTTAACACGCACTAACAAGAAATACGGACCAAGTACTTGCCGAGTAAGACACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTCCGAGCCCACCACCTACTCCTGTAACGCTTAGTGCTGTTGTGGAAGCCCCAACAAATCCTGTTTCTGAGTCTCGACAGCTTGACTC ] [-] EMBL CD159133 [ CACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGTCTCCTGGTCCACCAACGT ] [-] EMBL CD121001 [ CACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCT AAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGT ] [-] EMBL CD120978 [ CACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTAT ] [-] EMBL CD120937 [ CACAGACGGCGTAACTGGAGCTCACATACTTCTCGTTTGTCACCATGTATTGAGGAATCATCTAAAGTTGATTGTATGGCAACCAGTTCGCTCAATGGTTCTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTAT ] [-] EMBL CD136206 [ CTCCTGAACGCTTATCATCGAATCCCCCTTCACTAGAAAGCAGTAGCTCGTGCAGTTTAGCCTCTTGTTATGGGGTATCAGCACCGTTTATCCACCCTTCCATGCCTCCTGGTCCACCAACGTCACCTGTTC ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||