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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1754 fasta sequence
[ACTACTAGTAGTAGTATTAGTAGTACTGTTTAAATGATTGGCATGATTCATACAACTTACTTCTGATTTTGTCACTGTTATAGTCTTACATAATAAAGTTGATGGTATTGAAGCTGATGGTAAACAATCTAAATCAACAATATCAGGTAATGTTTTTTGAGTAGGCGTATCAATTTTTTGAATAATTACCATTGATTCCGATGATAAATTATAATTGGAATTGATACATTGTTGTGAAATAACATAATGTTTATTAGGGGGTACAGGTGTAGTAAGCGGACTATCAGTTGTAGCAGTGATGATAGGTTTATCAAGATTAGTAATTGAATTTGTTGTGAAGTGATTGACAAGATTTTCATATACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAAAATAGTCATGTCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCTTTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTGATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTG-AATATCAATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATG-TTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTCCAAGGCAAAGATTC]
[+] EMBL CD062016 [ACTACTAGTAGTAGTATTAGTAGTACTGTTTAAATGATTGGCATGATTCATACAACTTACTTCTGATTTTGTCACTGTTATAGTCTTACATAATAAAGTTGATGGTATTGAAGCTGATGGTAAACAATCTAAATCAACAATATCAGGTAATGTTTTTTGAGTAGGCGTATCAATTTTTTGAATAATTACCATTGATTCCGATGATAAATTATAATTGGAATTGATACATTGTTGTGAAATAACATAATGTTTATTAGGGGGTACAGGTGTAGTAAGCGGACTATCAGTTGTAGCAGTGATGATAGGTTTATCAAGATTAGTAATTGAATTTGTTGTGAAGTGATTGACAAGATTTTCATATACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAAAATAGTCATGTCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAA ]
[-] EMBL CD096385 [ CTATCAGTTGTAGCAGTGATGATAGGTTTATCAAGATTAGTAATTGAATTTGTCGTGAAGTGATTGACAAGATTTTCATATACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAGAATAGTCATGTCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTGGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCTTTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAG ]
[-] EMBL CD159551 [ TAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATCTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTGAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTGATGTGATGATCTGGGATAATG ]
[+] EMBL CD066864 [ TCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTGATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAA ]
[+] EMBL CD066928 [ TCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAG ]
[-] EMBL CD149503 [ GACTTGGTTGATGTGATGATCTGGGATAAAGAATTAGTTGGG ATTAGAGGGGGGAATAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTG AATATCAATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATT ]
[+] EMBL CD095877 [ TGGTTGATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGATCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTG AATATCAATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATGTTTTTTTTAATCTTTG ]
[+] EMBL CD166093 [ AACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCANATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTGAAATATC ATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAAT ]
[-] EMBL CD152327 [ AACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATGTTTTTTTTAATCTTTGTAGAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGAT ]
[-] EMBL AI976213 [ ATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATAACAATTCGATCTCATGCGGCGATTTGATAACCTTTCCAGATCAGAATTGCTAAGGAATTCATTTGCACGAGGATG TTTTTATAATCTTTGTAAAGCATGCTCCACGGTAACTCTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTAGATTTTTTTACGTCCCATTTCCAAGGCAAAGATTC]
[-] EMBL CD066933 [ GTTCTCGTNTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCCCGATGATG TTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTCCAA ]
[-] EMBL CD066858 [ GGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATG TTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTCCAA ]
consensusID : consensus_10150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[TTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACANCAG]
[+] EMBL CD116201 [TTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACANCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10150#0 ACTACTAGTAGTAGTATTAGTAGTACTGTTTAAATGATTGGCATGATTCATACAACTTAC 60
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 TTCTGATTTTGTCACTGTTATAGTCTTACATAATAAAGTTGATGGTATTGAAGCTGATGG 120
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 TAAACAATCTAAATCAACAATATCAGGTAATGTTTTTTGAGTAGGCGTATCAATTTTTTG 180
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 AATAATTACCATTGATTCCGATGATAAATTATAATTGGAATTGATACATTGTTGTGAAAT 240
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 AACATAATGTTTATTAGGGGGTACAGGTGTAGTAAGCGGACTATCAGTTGTAGCAGTGAT 300
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 GATAGGTTTATCAAGATTAGTAATTGAATTTGTTGTGAAGTGATTGACAAGATTTTCATA 360
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 TACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAAAATAGTCATG 420
consensus_10150#1 -----------------TTTTGATACTAAAATATTATTTACGTGA-TCAGGAGGATGG-- 40
* ** * * ** ** *** *** * *
consensus_10150#0 TCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCAT 480
consensus_10150#1 ----CTAGTTGATTTTGGTAAATTAGTAAAT-----------ATTGCGTTCAGGTTCCAT 85
** ** * * *** **** * * * * *************
consensus_10150#0 ATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATAC 540
consensus_10150#1 ATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATAC 145
************************************************************
consensus_10150#0 AACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGG 600
consensus_10150#1 AACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGG 205
************************************************************
consensus_10150#0 TGTTAATAATGTACACTGCTTTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGT 660
consensus_10150#1 TGTTAATAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGT 265
******************* ****************************************
consensus_10150#0 ATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGT 720
consensus_10150#1 ATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGT 325
************************************************************
consensus_10150#0 ATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTG 780
consensus_10150#1 ATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTG 385
************************************************************
consensus_10150#0 ATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATT 840
consensus_10150#1 ATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATT 445
************************************************************
consensus_10150#0 ATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGA 900
consensus_10150#1 ATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAG 505
****************************************************** **
consensus_10150#0 GTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTG 960
consensus_10150#1 GTT-------CCATATTCACTGAGGA--GGTTAGATTTGTATTCAATACAT-TTTGATTA 555
*** * ** * ** * ** ** * * * *** *** **
consensus_10150#0 ATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGC 1020
consensus_10150#1 GAATGATTATTGGATACANCAG-------------------------------------- 577
**** ** * * *
consensus_10150#0 TGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGA 1080
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 GTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATG 1140
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 AGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTC 1200
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 AACGACAAATCTCACATTTGATTGAATATCAATTTGATCAAATTTCTGTTTATCATCGTC 1260
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 AGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAAT 1320
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 GGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACC 1380
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 ATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGA 1440
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 TCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCT 1500
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 AAGGAATTCATTTGCACGATGATGTTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAAC 1560
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 ACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTC 1620
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 ACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGT 1680
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 GACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTC 1740
consensus_10150#1 ------------------------------------------------------------
consensus_10150#0 CAAGGCAAAGATTC 1754
consensus_10150#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||