These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1045 fasta sequence [CTATGTGACTCATCTAAGGCTCTCGATGTGATTTTTATAGTTCGCACTAAGGTTTGTTCATTGTACGTCATTTGATCCCTGTCATGGTTTTTTTATGGGTTTTATATGTTTGATGAGTTTGCCCACATTTTCTTTTGTTCTCTGTTCCGCTTTTCGTGGTGAAAGGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGTACTTCAATTACAATGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGAATGGATATGTTCAGAAAAATCTGGCTTTCATTAGTAATTTCAAAGAGCAAAACCCCTACAAAACAGAGGAGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTTAAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA-GAAA-CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT-AAAAAAGAAAACATTCACAATCTGGCGATGATGATAACGATGGACGAGCTGTACAGGGTCGTGGTGAATTTAATTTCACTTCAAGTTCTATGACATATCATCACACAAATGATGAACGAAGTCGTCGTAAACAATATCATGAA] [+] EMBL CD155259 [CTATGTGACTCATCTAAGGCTCTCGATGTGATTTTTATAGTTCGCACTAAGGTTTGTTCATTGTACGTCATTTGATCCCTGTCATGGTTTTTTTATGGGTTTTATATGTTTGATGAGTTTGCCCACATTTTCTTTTGTTCTCTGTTCCGCTTTTCGTGGTGAAAGGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGTACTTCAATTACAATGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGAATGGATATGTTCAGAAAAATCTGGCTTTCATTAGTAATTTCAAAGAGCAAAACCCCTACAAAACAGAGGAGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGTAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGA ] [+] EMBL CD153057 [ AGAGCAAAACCCCTACAAAACAGAGGAGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTTAAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACATAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACANAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCANAGATAACAA ] [-] EMBL CD155996 [ AGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTTAAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAAACGGGGAACAATTTCAGGAT ] [+] EMBL CD088108 [ AAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGG AAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGAAGATGAAGTCA ] [+] EMBL CD060906 [ TCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT AAAAAAGAAAACATTCACAATCTGGCGATGATGATAACGATGGACGAGCTGTA ] [-] EMBL CD060939 [ CCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT AAAAAAGAAAACATTCAC ATCTGGCGATGATGATAACGAT GACGAGCTGT ] [-] EMBL CD060935 [ CCCNATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT AAAAAAGAAAACATTCACAATCTGGCGATGAT TAACGATGGACGA CTGTACAGGGTCG ] [+] EMBL CD133847 [ GAGCCATTCGAAATCTCTCAGTCTGAGCACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATCTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTTAAAAAAAGAAAACATTCACAATCTGGTGATGATGATAACGATGG CG GTAGTA ATGGTGTTGGTGAATTTAATTTCACTTCAAGTTCTATGACATATCATCACACAAATGATGAACGAAGTCGTCGTAAACAATATCATGAA] [+] EMBL CD150187 [ GAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGAAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA CAAA CGAAGCGT ] [+] EMBL CD061821 [ TTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCAGGAAAGCGAAGCGTCTAGTCGAGGCACGAAAGGAGATGACAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTTAAAAAAAGAAAACATTCACAATCTG ] consensusID : consensus_10151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TTGAACACGGGCAAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATCTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCNGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCAGAAACGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAGCTATTTACAAATGTGAAACAGTCATTTCAATATTGGGATTTAAGTTTCGCGCTTCAGTACACGAAGAAACAACCAGACGACAGTTAGTTATACTTACTTGATATCTTATCATTTTGGAATCACATTGAAGTCAGTGTCACTAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACAT] [-] EMBL AI014225 [TTGAACACGGGCAAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATCTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCNGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCAGAAACGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAGCTATTTACAAATGTGAAACAGTCATTTCAATATTGGGATTTAAGTTTCGCGCTTCAGTACACGAAGAAACAACCAGACGACAGTTAGTTATACTTACTTGATATCTTATCATTTTGGAATCACATTGAAGTCAGTGTCACTAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACAT] consensusID : consensus_10151#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [GTCACTGAGTTATGACTTTGGGTCCAATTAATTTAAGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGAACTTAAATTACACTGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGACTGGATATGTTCAAAAAAATCTGCCTATCATTATTAATACCAAACATCACAACCCCTACAAAACAGGGGAGGACTTAAATACAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAACAAATACTAGAGCATGACCGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAAC] [+] EMBL CD162312 [GTCACTGAGTTATGACTTTGGGTCCAATTAATTTAAGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGAACTTAAATTACACTGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGACTGGATATGTTCAAAAAAATCTGCCTATCATTATTAATACCAAACATCACAACCCCTACAAAACAGGGGAGGACTTAAATACAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAACAAATACTAGAGCATGACCGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAAC] consensusID : consensus_10151#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [ATATCAAGTAAGTATAACTAACTGTCGTCTGGTTGTTTCTTCGTGTACTGAAGCGCGAAACTTAAATCCCAATATTGAAATGACTGTTTCACATTTGTAAATAGCCTAGAACATAATCGTGGTTTAAAAGTTAATAACGGGACTACTGAGTAAGTGATGTACAAGAGAACATTAATTTCACTTGGAATTCTCACTTATTTGTTA] [+] EMBL CD139585 [ATATCAAGTAAGTATAACTAACTGTCGTCTGGTTGTTTCTTCGTGTACTGAAGCGCGAAACTTAAATCCCAATATTGAAATGACTGTTTCACATTTGTAAATAGCCTAGAACATAATCGTGGTTTAAAAGTTAATAACGGGACTACTGAGTAAGTGATGTACAAGAGAACATTAATTTCACTTGGAATTCTCACTTATTTGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10151#0 CTATGTGACTCATCTAAGGCTCTCGATGTGATTTTTATAGTTCGCACTAAGGTTTGTTCA 60 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 TTGTACGTCATTTGATCCCTGTCATGGTTTTTTTATGGGTTTTATATGTTTGATGAGTTT 120 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 --------------------TTGAACACGGGCAAAATTGCTACCGAAAGGGACCCATGAA 40 consensus_10151#3 --------------------------------ATATCAAGTAAGTATAACTAACTGTCGT 28 consensus_10151#0 GCCCACATTTTCTTTTGTTCTCTGTTCCGCTTTTCGTGGTGAAAGGTGGGACTACCA-CC 179 consensus_10151#2 ---GTCACTGAGTTATGACTTTGGGTCCAATTAATTT------AAGTGGGACTACCA-CC 50 consensus_10151#1 AATGCCGCTGTAA-ATATCCTTAAAAACACAATCTTT-----AAAGAGGCACTGGGAATC 94 consensus_10151#3 CTGGTTGTTTCTTCGTGTACTGAAGCGCGAAACTT-----------AAATCCCAATATTG 77 * * * * * * consensus_10151#0 GTAAAACTGAACTTCCCTTA-GTTCCCTTTAACACAACGTACTTCAATTACAATGTATAA 238 consensus_10151#2 GTAAAACTGAACTTCCCTTA-GTTCCCTTTAACACAACGAACTTAAATTACACTGTATAA 109 consensus_10151#1 GGGGAACAATTTCNGGATGG-AAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGA 153 consensus_10151#3 AAATGACTGTTTCACATTTGTAAATAGCCTAGAACA---TAATCGTGGTTTAAAAGTTAA 134 ** * ** * * * * consensus_10151#0 TGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGAATGGATAT-GTTCAGAAAAATC 297 consensus_10151#2 TGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGACTGGATAT-GTTCAAAAAAATC 168 consensus_10151#1 CGC-AGAAACGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAGCT-ATTTACAAATGTG 211 consensus_10151#3 TA--ACGGGACTACTGAGTAAGTGATGTACAAGAGAACATTAATTTCACTTGGAATTCTC 192 * * * ** * * * * * * ** * consensus_10151#0 TGGCTTTCATTAGTAATTTCAAAGAGCAAAACCC---CTACAAAACAGAGGAGGACTTAA 354 consensus_10151#2 TGCCTATCATTATTAATACCAAACATCACAACCC---CTACAAAACAGGGGAGGACTTAA 225 consensus_10151#1 AAACAGTCATT-TCAATATTGGGATTTAAGTTTCGCGCTTCAGTACACGAAGAAACAACC 270 consensus_10151#3 ACTTATTTGTTA------------------------------------------------ 204 * ** consensus_10151#0 AGAGAGCAGAT-GCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGG 413 consensus_10151#2 ATACAGCAGAT-GCTCTGCTGTTTAAGGAACCAAATAAACAAATACTAGAGCATGACCGG 284 consensus_10151#1 AGACGACAGTTAGTTATACTTACTTGATATCTTATCATTTTGGAATCACATTGAAGTCAG 330 consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 AAACGAAAAATCGAAGTGAAATGTTTTGA-AATGGAACAGGAAATGGAGGAACAAGGTTA 472 consensus_10151#2 AAACGAAAAATCGAAGTGAAATGTTTTGA-AATGGAACAGGAAATGGAGGAAC------- 336 consensus_10151#1 TGTCACTAAC----ATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGT 386 consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 CACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTT 532 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 CATTCCAAAGATAACAACTTGAAACAACAACAT--------------------------- 419 consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 AAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGA 592 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 ACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAA 652 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 CACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGA 712 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 GTTGGCTGTTCAGCGGAAAAAAGATGACGCAGAAACGAAGCGTCTAGTCGAGGCACAAAA 772 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 GGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCA 832 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 TTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAA 892 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 GAAATCAGTTAAAAAAGAAAACATTCACAATCTGGCGATGATGATAACGATGGACGAGCT 952 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 GTACAGGGTCGTGGTGAATTTAATTTCACTTCAAGTTCTATGACATATCATCACACAAAT 1012 consensus_10151#2 ------------------------------------------------------------ consensus_10151#1 ------------------------------------------------------------ consensus_10151#3 ------------------------------------------------------------ consensus_10151#0 GATGAACGAAGTCGTCGTAAACAATATCATGAA 1045 consensus_10151#2 --------------------------------- consensus_10151#1 --------------------------------- consensus_10151#3 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||