These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 839 fasta sequence [CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA-TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT-TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT] [+] EMBL CD080612 [CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACANAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACTNNTG TTATTGAATGTATNTT ] [+] EMBL CD080588 [ tAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACANAATCTTAATACAATGTTTCCATAGCTCTATTNTCACTTGGTTACT NTGTTTATTGAA ] [+] EMBL AI976151 [ TACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTNTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATAT ] [+] EMBL BF936065 [ TACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTC ] [+] EMBL CD136594 [ actcttGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTANATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGNGTTTCTTCATTCTTTACTTGACTTAATTCATCGNTCACGTATAACANAAT ] [-] EMBL AI764860 [ TGCTTTGTGG TTTTCACTTTATAAACATATCGGTGCATTATTATTTGGGGGTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT] [-] EMBL BF936185 [ TTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTCATCACCCGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTT ] [-] EMBL AI764861 [ CAATGTTTCCATAGCTCTATTTTCACNTGGGTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT] consensusID : consensus_10162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 649 fasta sequence [GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTT-AAAGACCAACGCGCCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA] [-] EMBL CD119178 [GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACC ] [+] EMBL CD148098 [ AAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGAC ] [-] EMBL CD119242 [ TACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACC ] [+] EMBL CD197752 [ TAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGCTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAGCAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATG ] [+] EMBL CD112624 [ TGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTT AAAGACCAACGCGCCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA] [-] EMBL CD112756 [ ATGTCACGTACGTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAAGACCAACGCACCCAATAGTTTTGTCGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10162#0 ------------------------------------------------------------ consensus_10162#1 GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATAT 60 consensus_10162#0 ------------------------------------------------------------ consensus_10162#1 TCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAA 120 consensus_10162#0 ------------------------------------------------------------ consensus_10162#1 ATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAAC 180 consensus_10162#0 ---------------------------------------------CCGAGGCCAAAATTC 15 consensus_10162#1 TGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATT 240 * * * ** * consensus_10162#0 GGCACGAGGCAGATTTTG-------TCTTTTCAACGACGGACAGGATCCCTTTAA-CAAC 67 consensus_10162#1 CGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAAC 300 * * ** * * * ** ** * * ** * * ** * *** **** consensus_10162#0 CTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAA 127 consensus_10162#1 CTCGCGCTTCG--TTGATA--GTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAA 356 *** * ** * * ** *** *********************************** consensus_10162#0 AGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCT 187 consensus_10162#1 AGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCT 416 ************************************************************ consensus_10162#0 GATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCA 247 consensus_10162#1 GATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCA 476 ***************** ****************************************** consensus_10162#0 CATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGAC 307 consensus_10162#1 CATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGAC 536 ************************************************************ consensus_10162#0 CCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAAT 367 consensus_10162#1 CCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCGCCCAAT 596 ***************************************************** ****** consensus_10162#0 AGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATT 427 consensus_10162#1 AGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA------- 649 ***************************************************** consensus_10162#0 ATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTT 487 consensus_10162#1 ------------------------------------------------------------ consensus_10162#0 GTGGTTTTTCATTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACT 547 consensus_10162#1 ------------------------------------------------------------ consensus_10162#0 TGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATT 607 consensus_10162#1 ------------------------------------------------------------ consensus_10162#0 TTCACTTGGTTACTTTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCA 667 consensus_10162#1 ------------------------------------------------------------ consensus_10162#0 TTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTT 727 consensus_10162#1 ------------------------------------------------------------ consensus_10162#0 ATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAG 787 consensus_10162#1 ------------------------------------------------------------ consensus_10162#0 TGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT 839 consensus_10162#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||