cluster # 10162

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Schistosoma mansoni
cluster # 10162 cluster # 10162 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10162#0 length = 839 sequences # 8

consensus_10162#1 length = 649 sequences # 6

consensusID : consensus_10162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 839
fasta sequence

                              [CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA-TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT-TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT]

[+] EMBL CD080612             [CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACANAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACTNNTG TTATTGAATGTATNTT                                                                                                                                                                                                      ]
[+] EMBL CD080588             [                        tAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACANAATCTTAATACAATGTTTCCATAGCTCTATTNTCACTTGGTTACT NTGTTTATTGAA                                                                                                                                                                                                              ]
[+] EMBL AI976151             [                                                                                                                                                                  TACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTNTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATAT                                                                                    ]
[+] EMBL BF936065             [                                                                                                                                                                  TACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTC                                                                                                                                                                             ]
[+] EMBL CD136594             [                                                                                                                                                                                                                                                     actcttGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTANATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGNGTTTCTTCATTCTTTACTTGACTTAATTCATCGNTCACGTATAACANAAT                                                                                                                                                                                                                                                                     ]
[-] EMBL AI764860             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCTTTGTGG TTTTCACTTTATAAACATATCGGTGCATTATTATTTGGGGGTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT]
[-] EMBL BF936185             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTCATCACCCGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTT     ]
[-] EMBL AI764861             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAATGTTTCCATAGCTCTATTTTCACNTGGGTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT]




>consensus_10162#0
CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTT
TAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCC
AAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTG
TCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAAC
TATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACT
ATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGC
ACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA
CAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATT
GTGCTTTGTGGTTTTTCATTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATT
CTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAG
CTCTATTTTCACTTGGTTACTTTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCT
TATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAG
TATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCA
ACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT

consensusID : consensus_10162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 649
fasta sequence

                              [GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTT-AAAGACCAACGCGCCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA]

[-] EMBL CD119178             [GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACC                                                                                                                                                                                                                                                   ]
[+] EMBL CD148098             [                    AAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD119242             [                                                                                      TACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACC                                                                                                                                                                                                                                                   ]
[+] EMBL CD197752             [                                                                                                                     TAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGCTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAGCAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATG                                                                                                                                ]
[+] EMBL CD112624             [                                                                                                                                                                                                         TGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTT AAAGACCAACGCGCCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA]
[-] EMBL CD112756             [                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGTCACGTACGTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAAGACCAACGCACCCAATAGTTTTGTCGAA                                         ]




>consensus_10162#1
GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATAT
TCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAA
ATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAAC
TGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATT
CGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAAC
CTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGAC
GCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATG
TCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATC
GTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTT
TACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCGCCCAATAGTT
TTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10162#0      ------------------------------------------------------------
consensus_10162#1      GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATAT 60
                                                                                   

consensus_10162#0      ------------------------------------------------------------
consensus_10162#1      TCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAA 120
                                                                                   

consensus_10162#0      ------------------------------------------------------------
consensus_10162#1      ATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAAC 180
                                                                                   

consensus_10162#0      ---------------------------------------------CCGAGGCCAAAATTC 15
consensus_10162#1      TGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATT 240
                                                                     * * *  **   * 

consensus_10162#0      GGCACGAGGCAGATTTTG-------TCTTTTCAACGACGGACAGGATCCCTTTAA-CAAC 67
consensus_10162#1      CGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAAC 300
                        * * ** *  * * **         ** * *  **  * * **      * *** ****

consensus_10162#0      CTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAA 127
consensus_10162#1      CTCGCGCTTCG--TTGATA--GTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAA 356
                       ***    * **  * * **  *** ***********************************

consensus_10162#0      AGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCT 187
consensus_10162#1      AGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCT 416
                       ************************************************************

consensus_10162#0      GATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCA 247
consensus_10162#1      GATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCA 476
                       ***************** ******************************************

consensus_10162#0      CATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGAC 307
consensus_10162#1      CATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGAC 536
                       ************************************************************

consensus_10162#0      CCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAAT 367
consensus_10162#1      CCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCGCCCAAT 596
                       ***************************************************** ******

consensus_10162#0      AGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATT 427
consensus_10162#1      AGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA------- 649
                       *****************************************************       

consensus_10162#0      ATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTT 487
consensus_10162#1      ------------------------------------------------------------
                                                                                   

consensus_10162#0      GTGGTTTTTCATTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACT 547
consensus_10162#1      ------------------------------------------------------------
                                                                                   

consensus_10162#0      TGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATT 607
consensus_10162#1      ------------------------------------------------------------
                                                                                   

consensus_10162#0      TTCACTTGGTTACTTTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCA 667
consensus_10162#1      ------------------------------------------------------------
                                                                                   

consensus_10162#0      TTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTT 727
consensus_10162#1      ------------------------------------------------------------
                                                                                   

consensus_10162#0      ATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAG 787
consensus_10162#1      ------------------------------------------------------------
                                                                                   

consensus_10162#0      TGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT 839
consensus_10162#1      ----------------------------------------------------