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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 839 fasta sequence
[CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA-TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT-TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT]
[+] EMBL CD080612 [CCGAGGCCAAAATTCGGCACGAGGCAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACANAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACTNNTG TTATTGAATGTATNTT ]
[+] EMBL CD080588 [ tAGATTTTGTCTTTTCAACGACGGACAGGATCCCTTTAACAACCTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACANAATCTTAATACAATGTTTCCATAGCTCTATTNTCACTTGGTTACT NTGTTTATTGAA ]
[+] EMBL AI976151 [ TACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTNTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATAT ]
[+] EMBL BF936065 [ TACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTC ]
[+] EMBL CD136594 [ actcttGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATTATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTANATTATTGTGCTTTGTGGTTTTTCA TTTATAAACTTATCGGTGCATTATTATTTGNGTTTCTTCATTCTTTACTTGACTTAATTCATCGNTCACGTATAACANAAT ]
[-] EMBL AI764860 [ TGCTTTGTGG TTTTCACTTTATAAACATATCGGTGCATTATTATTTGGGGGTCTTCATTCTTTACTTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT]
[-] EMBL BF936185 [ TTGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATTTTCACTTGGTTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTCATCACCCGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTT ]
[-] EMBL AI764861 [ CAATGTTTCCATAGCTCTATTTTCACNTGGGTACT TTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCATTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTTATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAGTGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT]
consensusID : consensus_10162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 649 fasta sequence
[GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTT-AAAGACCAACGCGCCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA]
[-] EMBL CD119178 [GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACC ]
[+] EMBL CD148098 [ AAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATATTCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGAC ]
[-] EMBL CD119242 [ TACAAAAAGCACATAGAGCCATTACATTGTGTAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACC ]
[+] EMBL CD197752 [ TAAATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAACTGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGCTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAGCAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATG ]
[+] EMBL CD112624 [ TGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATTCGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAACCTCGCGCTTCGTTGATAGTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAAAGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCTGATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTT AAAGACCAACGCGCCCAATAGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA]
[-] EMBL CD112756 [ ATGTCACGTACGTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCACATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGACCCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAAGACCAACGCACCCAATAGTTTTGTCGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10162#0 ------------------------------------------------------------
consensus_10162#1 GGTTTGTTTGCCAGGCCCGAAAGAAAGAACCAGATGTTGTATTACTTGGTGACTCCATAT 60
consensus_10162#0 ------------------------------------------------------------
consensus_10162#1 TCGTTTACATGCAGTTTACACAGACGTACAAAAAGCACATAGAGCCATTACATTGTGTAA 120
consensus_10162#0 ------------------------------------------------------------
consensus_10162#1 ATTTTAGTATTAGTAATGATCAGACACAAAATGTGTTGTGGAGAATCGAAAATGGAGAAC 180
consensus_10162#0 ---------------------------------------------CCGAGGCCAAAATTC 15
consensus_10162#1 TGGACGGCTTTTCGCCTAAGGTGGTCGTAATCATGATTGGTAGTCACAACGTTAACGATT 240
* * * ** *
consensus_10162#0 GGCACGAGGCAGATTTTG-------TCTTTTCAACGACGGACAGGATCCCTTTAA-CAAC 67
consensus_10162#1 CGGAAGAAGAGGTTGTTAAAGGGATCCTGTCCGTCGTTGAAAAGACAAAATCTAAGCAAC 300
* * ** * * * ** ** * * ** * * ** * *** ****
consensus_10162#0 CTCTTCTTCCGAATCGTTAACGTTGTGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAA 127
consensus_10162#1 CTCGCGCTTCG--TTGATA--GTTATGGGTCTTTTACCGTGTGGTCGAACTCCAAACAAA 356
*** * ** * * ** *** ***********************************
consensus_10162#0 AGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCT 187
consensus_10162#1 AGACGCACGAAGCATGAACAGATTAATAAACTACTTACAGAAGCCTTCACCTGTCGACCT 416
************************************************************
consensus_10162#0 GATGTCACGTACTTGAACCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCA 247
consensus_10162#1 GATGTCACGTACTTGAATCCTGACTGGGATAATTTTATCCAACAAGATGGAACTATTTCA 476
***************** ******************************************
consensus_10162#0 CATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGAC 307
consensus_10162#1 CATCGTGATATGTTCGACTACATGCATCCTACCGAAAATGGTTATGAAAAACTATGTGAC 536
************************************************************
consensus_10162#0 CCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCACCCAAT 367
consensus_10162#1 CCTTTACTAGAAGAACTGCAAAATTCTCTGCACACATTCTTAAAGACCAACGCGCCCAAT 596
***************************************************** ******
consensus_10162#0 AGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTACAATATT 427
consensus_10162#1 AGTTTTGTCGAAGATTCATAATTTCCAGGTTTCAGACATTTTGGTATTCTGTA------- 649
*****************************************************
consensus_10162#0 ATTCCTATTTCCGAGTCAATTCTTTGTCTATTTAATTTTGGATTTAAATTATTGTGCTTT 487
consensus_10162#1 ------------------------------------------------------------
consensus_10162#0 GTGGTTTTTCATTTATAAACTTATCGGTGCATTATTATTTGGGTTTCTTCATTCTTTACT 547
consensus_10162#1 ------------------------------------------------------------
consensus_10162#0 TGACTTAATTCATCGTTCACGTATAACAAAATCTTAATACAATGTTTCCATAGCTCTATT 607
consensus_10162#1 ------------------------------------------------------------
consensus_10162#0 TTCACTTGGTTACTTTGTTTATTGAATGTATTTTGTTATCTTTACGACTACCTTATGTCA 667
consensus_10162#1 ------------------------------------------------------------
consensus_10162#0 TTTGATTCTCCTTGCCACTTGCTGTGGGCTTTATCCAACTTATCAATGACTAGTATATTT 727
consensus_10162#1 ------------------------------------------------------------
consensus_10162#0 ATTACGTATTTCAGACATGCTTTCATATACTTCAGTTGTATCCTTATGGATCAACTCCAG 787
consensus_10162#1 ------------------------------------------------------------
consensus_10162#0 TGATCAATTGTTTGGTGGAAATTATAGCTAATACAGAATAAACTGTTTGGTT 839
consensus_10162#1 ----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||