|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1473 fasta sequence
[GTCTGACTGGGATTTCGGTAAGTTATTGACTTGTTGACGTGTTGAATGATGTTGAGGTTCATAAGTCTCACGAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCTACTACGACTTCTTTCACGGTGAGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATNAATGATGACGTTGTGTTGATTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGGGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACGCGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGTATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCGACAACTGTCCCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCG--TTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT-TCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTAAAGGTAAATTAGCAACAGCCTCAGACAGACTATACACATGTAAACGCACGGTTTGACCACCCACTCTCG]
[-] EMBL CD145137 [GTCTGACTGGGATTTCGGTAAGTTATTGACTTGTTGACGTGTTGAATGATGTTGAGGTTCATAAGTCTCACGAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCCACTACGACTTCTTTCACGGTGAGGTCCATGATG ]
[+] EMBL CD197277 [ GAAAACGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCTACTACGACTTCTTTCACGGTGAGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATNAATGATGACGTTGTGTTGATTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCG ]
[+] EMBL CD197334 [ GAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTCACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACGTTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATATCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCGATATGTTGATGTTCGTCGAGATTCGTATCCTTCCGAGCTACTACGACTTCTTTCACGGTGAGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATAAATGATGACGTTGTGTTGATTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGT ]
[+] EMBL CD154188 [ GACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGAGGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGGGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACGCGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGTATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCGACAACTGTCCCCGCANATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGNTTCACCCTTCGAGTGNNTTCG NTNTTTTCACATGNTCGCGC ]
[+] EMBL CD153207 [ ACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGGGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACGCGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGTATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCGACAACTGTCCCCGCANATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTNTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTCTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGC ]
[+] EMBL CD130002 [ ATATCGCTTGGACTTTGAAGGCGAACTGACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACCGCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGGCGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATGG ]
[+] EMBL CD062924 [ AACTGTCCCCGCTAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCG TTT ]
[-] EMBL CD062857 [ ACTGTCCCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACATTTACCTCAGAGTTCGCTTCATCGTGTTTGATACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCG TTTT ]
[-] EMBL CD153038 [ TGTCNCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGACA TTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTNTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT TCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTAAAG ]
[+] EMBL CD113654 [ AACGATGAGCCATCCCATCCACCATTGACATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACATATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT TCGACTGACCAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAGGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTAAAGGTAAATTAGCAACAGCCTCAGACAGACTATACACATGTAAACGCACGGTTTGAC ]
[-] EMBL CD139362 [ CGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGATAACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATGCCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAAGTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTAT TCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCCTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCC ]
[-] EMBL CD121482 [ TTGATCTGCACTATGTCGACTGACTAACATCCGAAGACAGCTTAGGACTGATTATGACTGAGGATTTGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGG ]
[+] EMBL CD138305 [ AAGACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCAGAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGGACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTTTACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCATTTTAGCTTTATTTGGTATTCTTANAGGTAAATTAGCAACAGCCTCAGACAGACTATACACATNNGTACGCACGGTTGAAACACCCACTCTCG]
consensusID : consensus_10168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 96 fasta sequence
[TCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTANATGCATGGATGGCGATCTACTGTTTTGCTCAACTTGGNGATAAATGATGACG]
[+] EMBL CD157593 [TCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTANATGCATGGATGGCGATCTACTGTTTTGCTCAACTTGGNGATAAATGATGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10168#0 GTCTGACTGGGATTTCGGTAAGTTATTGACTTGTTGACGTGTTGAATGATGTTGAGGTTC 60
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ATAAGTCTCACGAAAATGTTTTGAGATTCTAGGAGATGGTGATAAAGACTCGATATTTTC 120
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ACGTCGATGAATTCCACTTCCGTGTCTTTTTGTGCTATTAGAATCACGTATGTGACGACG 180
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 TTCATAATTTTTCGAATAACTAATCTCATGTAAATCAGGATTGTCATCCGGATTATGATA 240
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 TCTAGGTTTTGTCTTAGCGAGATAAGTCTTTGAGTGAATATGCTGTTTATCACTTGTGCG 300
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ATATGTTGATGTTCGTCGAGATTCGTATCTTTCCGAGCTACTACGACTTCTTTCACGGTG 360
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 AGGTCCATGATGTCTTGAGTGAGACCTATGACTTGGGGATNAATGATGACGTTGTGTTGA 420
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 TTGACGATACCCGTAACTTAAAGTAGCCGAATTATATCGCTTTGACTTTGAAGGTGAACT 480
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 GACAGATGATTGCGTTCTTTTTAATGAATTATACTTTTCTTCAGGATTAGTTCCGTGACC 540
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 GCTATCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTAAATGCATGGATGG 600
consensus_10168#1 ----TCTGTGGCCCGTGTAGGAAGATCAGGTTTGTGATCATGACGTANATGCATGGATGG 56
******************************************* ************
consensus_10168#0 CGATCTACTGTTTTGCTCATACCTCTGCCTATGTAACTTATCATGAAAACGTGGGTCATG 660
consensus_10168#1 CGATCTACTGTTTTGCTCAACTTGGNG-----ATAAATGATGACG--------------- 96
******************* * *** * ** * *
consensus_10168#0 GGCACGGTGCATTTCATGTTTTCCGGAGCGTATCGGGGATTGACTACAAGAAGATGAACG 720
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 CGAAATATGTGAAGAACATCTAGAAGCGGATGACGGTGTCCCTGGAACGGGTTCATAAGT 780
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ATAGGGACGTGGAATAACTTCAAAGCTTTGTTCTTTGACTGAAGTTGGAGCATCTTGGCG 840
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ACAACTGTCCCCGCAAATGACAGACTTGGTAGAACGATGAGCCATCCCATCCACCATTGA 900
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 CATTTTTGACGAACCATGAGGTTTGTCGCGATGCTTGTGTTTACGGACAGATTCTTTGAT 960
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 AACTGATTGATCAACGTTTACCTCAGAGTTCGCTTCATCGTGTTTGCTACGCTTTTCATG 1020
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 CCTTGTTTCACCCTTCGAGTGTTTTCGTTTTTTTCACATGTTCGCGCTTGCTTTTGTCAA 1080
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 GTATAATTTCTTTTTCAAACCCTTCTTTATCTGCACTATTCGACTGACTAACATCCGAAG 1140
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ACAGCTTAGGACTGATTATGACTGAGGATTCGTTTCTATTCTTTGCATGTTTTGTTTTCA 1200
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 GAGGTTTCTCTTTACTATTTGAGTGAGTAGTTTGAGAACTTTTTTTTGAATGGTGTTTGG 1260
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 ACTTTTTCGTTACTTCCTTAAGTGAACTACAATCGACATATGACTCAGCACCCGCTGGTT 1320
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 TACAAGTCCCTCGTATGGGTGTTTGGTCTTCTGGACAGATAAGCTCCGCTTGTCGGGGCA 1380
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 TTTTAGCTTTATTTGGTATTCTTAAAGGTAAATTAGCAACAGCCTCAGACAGACTATACA 1440
consensus_10168#1 ------------------------------------------------------------
consensus_10168#0 CATGTAAACGCACGGTTTGACCACCCACTCTCG 1473
consensus_10168#1 ---------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||